GBrowse Details

Vigan.11G245300.01

Basic Information:
Name: Vigan.11G245300.01
Multiple alignment
Variant Information
Position: Chr11:36877773..36881945 (- strand)
Length: 4173
Functional Information:
Description: Similar to Os08g0387500 protein. [Q0J5Y7, Oryza sativa subsp. japonica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.83,4.05,5.58,34.43,3.92,7.70,6.05,6.22
Arabidopsis thaliana homolog: AT5G19540.1
Automatic updates:
Name: NM_001255151 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100795956 (LOC100795956), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:36877773..36877944 (- strand)
Length: 172
Type: three_prime_UTR
Position: Chr11:36877945..36878386 (- strand)
Length: 442
Type: CDS
Position: Chr11:36878811..36879097 (- strand)
Length: 287
Type: CDS
Position: Chr11:36879548..36879818 (- strand)
Length: 271
Type: CDS
Position: Chr11:36881311..36881348 (- strand)
Length: 38
Type: CDS
Position: Chr11:36881442..36881804 (- strand)
Length: 363
Type: CDS
Position: Chr11:36881805..36881945 (- strand)
Length: 141
Type: five_prime_UTR

>Vigan.11G245300.01 class=Sequence position=Chr11:36877773..36881945 (- strand)
CTAGCGGTGA GTGTAAGTGG TAACTGCAAT AACTGAACAG CACGGTGGGT TTTTCGGTGA CTGAAAAACC AAATCCTATA
TTTCTCTGGT TATCCAAACA CTTCTCTATG TGGTTGTGTT GCAGAGCATA GAAGAAGAAA AATGGTGTTA GCTTCAATTT
CAATTGTATC TTCTTCATCT TCATTCCTCT CTGATTCTCC TTCCACTTCC GCTTCCACCA AAACCAGACC TTTCCTCTTC
CCTTCCTCAA ACCGAACCTC TCTTTTCGGC TTCCCCAGAG CACCCCTTCC CAATGCTACC ATCAGAGCCT CATCACCCTC
TTCTTCTTCC GCTTTCACAC CGCAGGAAAA TGGGACGCCG GAGCAGTTCC TCGAGAACAA TTCCATCGCC GATTTCATGC
GGTTCAAAAG CGGCGTCGAA GGTGGTGGCA GTTCCGAGTT GCAGACGGCT CTTGTCAGCT ACAGGAAGAG GTTTCCTTGG
TCCCTTTTGA GCCCTTTTCT TCAGGTCACT CTCAAGTTTA TTTTTTTCTC AATTGGGTCT CTTGGTTTTG GTATTTCTTT
GTTTCCTGAT GTTGTGTTGT TTTTGGTGTT GTTGTAGGTT GACTTGGTTT CGACAATTCA CATCGCCGAT GAAGAGTATG
CGTTTGTCTT TCTGAACATC TCACTCTAGT CATGTTTTGA TTGTGGTAGT TGTTAGAAGT TAATTAATTG TGGTAGTAAG
AAAGCGTTGG GAATGTCAAT TTCAAATTTC CAAATATTAA TTCCAGTGAG TGAATTCGAG ATTTAATAAT TTATATGTGA
AAGGTTGTGA TTGTTGACGT ATGTGTATAA TCATTTCTAA TGGAGGTGAC TTCAGGATTG TAAGAAATAA CGAATAAATA
CTTATCAGTG AAGTGTTTAA AAGTCATTGT TCATCACCAC CACTATAGAT AGTTCTTAAG AAGAACAATC CCAACCAGAG
CACGGGCTTG TGTACTCAAG CAGAAGAGAT GTGAGTGAGT TATTACAATT CCTTTAACTT TTGAGAGCAA GACTCAAGTT
TGTTGGGGTA TACGCCATTC AGGGAGGGTT TTTCTCAAGT TTGTTTAAAG TTTGTAATCT TATTTCAAAT AGCGAGTATT
TGTTGAGAGA GAAATGCTAA CAACACACTC TTTTGAGTAC ACTCTAATAT CGTTTGAAAT TTATTGAAAA TAACAAAATT
TGTGTGGATC TATCTTTTAT TTAGTGAGTC TCACTCATGA TTTTGTAGTT TCAAAGAATT TTAACCAATT CTAAAGAATG
TGCTCAAAAG AGTGCTTTAG AAAGTGTGTT CTTGAAATGT TTATCTGGAT ATAGACAATC GGGATTGAAT CATGTTACAT
TTGTGTTTTT TTGCTGTTTT CATTTCTATA ATTGTTTGTG TTCTATCCTT TGATTTTATT GTGTGTGGAG TTTTTTTTTC
CCCACAAAAA GGAAGTGAAA AAATTCATGT GGTTCTGGTG GTGAGGATGT GTAGAGAAAT ATATTACGGT AGAGGGGGAT
GTTTGAGTTC TAAGATGAAC TAGAGTAATA TGCCAAAATC AAAGATGTTA AATTAAGAGG ATGATGAGGG TGGTTTTAGA
CATATATGTT CATGCAAGTC TAACAAACTA CTGATTTGTA GCCTTTCGTG GTTTTGGATT AGATTAATGA CATTGCATGT
TAATGATTAA ACTCAAGTTT TTCTTTTGGT ATTGTCAATG TGAACTTCTA TTGATAATAT TGGTGAGCAT AGGACAGGTA
TATGTAAATG GTTTGTTTTG TGATGTTGCT TTCTTGATAG TAGTCCCATT CTCCAAAATA TGTTGGTCCA TAATGACTTT
GATTAACAGG ATGATCATCG TGATATTCAA ATTCAATTGC AAGGGTGTGT TTTGCTAAAC TGCATGCCTG TCTAATTACA
ACCTGTTAGC TTTGTTTGTA GGTACAAACT TTCTAGTTTT TGTGCAATCT ATATGATCAC TTTTCAAGTT GGGGCACTAT
TTAAGATTTT CTTATGATAA GTTTGAGTGC TTTTTACTGA CTTAATGTGT TTATTTTGGT TTTATGTTTT GATTTCTAAG
TAATATTATA TTACTATTCA TGTGGATGAT CTATTTTATA TAAACAGGTA TTTTCTGGCC CTTCAGAAGG AACTTGAAAG
CTATGATTGT GTCCTTTTTG AAATGGTAGC GAGCAGAGAA AGTTTAGAGA GTAGAAGAAA CGCTACTGCT ACAAAAAGGT
TAAAAAGTTC ACGCTCAAAG GGTTTTAACA TTTTGGGATG CATCCAGAGA CAGATGGCTC AAATTCTTAC ACTTGATTTC
CAGTTAGATT GTCTCAACTA CCAGTCTTCA AATTGGTACC ATGCAGATCT TGATTACGAG ACCTTTAAAT TACTTCAGGT
TTTAACTGCT AATTTTTTTT GCTTAATTCA ACATGGTGCA CTGATTATGA ACACTATTCG AAATACAAAA ATTGAAGTGT
TACTGTTCTT TCAAGACAAT TTATGATTCC ATACATTGCA TTCAGTGAAA TTCAGCTGTT CTCATCTAAT CACTGTCATA
TAAGAGCCAT CAAATAATAT GAAAGACTTG ATCTGAAATT GAGTCCAAAT TCTATGCTGG ATTTTTAGGT ACTGTCCTCT
GCTCAGCATT AAAATACCTT GATGTTGGTA CTTAAATTTT TTTTAATATA TTTTAAAAAC ATCAAAATTA GTGTCTATCA
ATGTATTTCA AAGATACAGA AGAGGAATAA CACAGGAAAA CCAGCAGAGA TCCAAATTCT CTGAAATTTG AGCTCTTGCA
CTTTATTAAT TTTCCTTGTC CAGGTCTAAT TTCATTCTGT AATTTCAGCT TGAAAAAGGT GAAAGCTTCT TCTCCTTTGC
AAAAGATATG ACTCTTAGGT CTACAAAGGC AGTATTACAG CCAGCTTCAA TTCCGGAAGA TCTTGACCCT TTGAGATCCA
AGCTATTATG GGCTTCACGT GTACTTCCTA TGCCACTTGT TGGCCTTCTT ATCATTGGAG GTGTTTGTAC AGATGTGGGA
AGTCAAGCAT CAGAATATCC CGAAATTGAG GCACTGTCAA GGCTTGATTT TGGTGCTGCA ATGAAGGTCT TCCTTGCAAA
GAGACTAACA TCTGAGTACG TTCCTGACAT TTATTTCTTT CAATCCAACG CTTTAATAGT CATTCTGAAC TGCATTTTTA
TTTGAAAGTA TAGTCTGTGT TGATTATCCC TTATTCTTCA CTAGTACTGT ATGTACATAT TAAGGTTAAA TATATTTTTC
GTCTCTAAAT TAAATATATA CATATTTTAT TTTATGAAAG TTAGGTCAAA CATCTTTCCT AGGAAAACTC TATTTGTTAC
ATGGTAAACT CTTCATGTAG TCTTTGCTGG GAATCATGTT TTACATAACT TTCATAAGCG AAAGGCCGAA GTAAGTATAT
ATTTAGTTTA GGTACAAAAC ACACTTTTTG AGAATAATTT AAAGATTAAA AACATATTTA ATCTTAATAT TGATTTTCTT
TTGGTTGGAC GCTAATAAAG ATGACATATT CTTGTAAAGG TTCACTCTGG TGACAGCAGA TGTAGAGGAG AAATCAGTTA
TAATTGGTGA GAGAAATAGA GTAGCAACAG AAGCCCTAAA AGCAGCAATA GACAAAGGAC ACAATAGAAT TGCAATACTT
TATGGGGGTG GCCACATGCC AGATCTTGGG AGGAGACTAA GAGAGGAGTT TGATTTAGTC CCATCTAATG TGAAGTGGAT
AACAGCTTGG TCCATAAGGA AAAGGGACCT AAATACTAAT TCATTTCCAT TTCTGAAGAA GATTGCTAAG GCCTCAGGCT
GGCCATTGAA CCGCTATCAG ACATTGGCAT TGCTCATCTT TTCATCAGTC TTGGCATTGG ATCTGTGGTT CTGGGAGCTA
TTCTTTGGCA CTGCAGTCAA TTGGGTCTCT GAACTTGGCT CAGAACTTGT TCAGTATGTT GGTAATTCAC CAATGATATG
ATCATTGGAC TCAGAAAATA CATACTAATT GCTAAATAGG ATGAAAAAAT TTGTATGTGC CACTGTAAAT ACGAAAAGCT
TTATTTTTAT TACAGATATT AAATTCTAGC TGTTCCCATT TCTCAAAGTG TTAAAATATA CAATTGTTTG CATTCAATAT
ACTTTAACAG GTA

>Vigan.11G245300.01
CTAGCGGTGA GTGTAAGTGG TAACTGCAAT AACTGAACAG CACGGTGGGT TTTTCGGTGA CTGAAAAACC AAATCCTATA
TTTCTCTGGT TATCCAAACA CTTCTCTATG TGGTTGTGTT GCAGAGCATA GAAGAAGAAA AATGGTGTTA GCTTCAATTT
CAATTGTATC TTCTTCATCT TCATTCCTCT CTGATTCTCC TTCCACTTCC GCTTCCACCA AAACCAGACC TTTCCTCTTC
CCTTCCTCAA ACCGAACCTC TCTTTTCGGC TTCCCCAGAG CACCCCTTCC CAATGCTACC ATCAGAGCCT CATCACCCTC
TTCTTCTTCC GCTTTCACAC CGCAGGAAAA TGGGACGCCG GAGCAGTTCC TCGAGAACAA TTCCATCGCC GATTTCATGC
GGTTCAAAAG CGGCGTCGAA GGTGGTGGCA GTTCCGAGTT GCAGACGGCT CTTGTCAGCT ACAGGAAGAG GTTTCCTTGG
TCCCTTTTGA GCCCTTTTCT TCAGGTTGAC TTGGTTTCGA CAATTCACAT CGCCGATGAA GAGTATTTTC TGGCCCTTCA
GAAGGAACTT GAAAGCTATG ATTGTGTCCT TTTTGAAATG GTAGCGAGCA GAGAAAGTTT AGAGAGTAGA AGAAACGCTA
CTGCTACAAA AAGGTTAAAA AGTTCACGCT CAAAGGGTTT TAACATTTTG GGATGCATCC AGAGACAGAT GGCTCAAATT
CTTACACTTG ATTTCCAGTT AGATTGTCTC AACTACCAGT CTTCAAATTG GTACCATGCA GATCTTGATT ACGAGACCTT
TAAATTACTT CAGCTTGAAA AAGGTGAAAG CTTCTTCTCC TTTGCAAAAG ATATGACTCT TAGGTCTACA AAGGCAGTAT
TACAGCCAGC TTCAATTCCG GAAGATCTTG ACCCTTTGAG ATCCAAGCTA TTATGGGCTT CACGTGTACT TCCTATGCCA
CTTGTTGGCC TTCTTATCAT TGGAGGTGTT TGTACAGATG TGGGAAGTCA AGCATCAGAA TATCCCGAAA TTGAGGCACT
GTCAAGGCTT GATTTTGGTG CTGCAATGAA GGTCTTCCTT GCAAAGAGAC TAACATCTGA GTTCACTCTG GTGACAGCAG
ATGTAGAGGA GAAATCAGTT ATAATTGGTG AGAGAAATAG AGTAGCAACA GAAGCCCTAA AAGCAGCAAT AGACAAAGGA
CACAATAGAA TTGCAATACT TTATGGGGGT GGCCACATGC CAGATCTTGG GAGGAGACTA AGAGAGGAGT TTGATTTAGT
CCCATCTAAT GTGAAGTGGA TAACAGCTTG GTCCATAAGG AAAAGGGACC TAAATACTAA TTCATTTCCA TTTCTGAAGA
AGATTGCTAA GGCCTCAGGC TGGCCATTGA ACCGCTATCA GACATTGGCA TTGCTCATCT TTTCATCAGT CTTGGCATTG
GATCTGTGGT TCTGGGAGCT ATTCTTTGGC ACTGCAGTCA ATTGGGTCTC TGAACTTGGC TCAGAACTTG TTCAGTATGT
TGGTAATTCA CCAATGATAT GATCATTGGA CTCAGAAAAT ACATACTAAT TGCTAAATAG GATGAAAAAA TTTGTATGTG
CCACTGTAAA TACGAAAAGC TTTATTTTTA TTACAGATAT TAAATTCTAG CTGTTCCCAT TTCTCAAAGT GTTAAAATAT
ACAATTGTTT GCATTCAATA TACTTTAACA GGTA

>Vigan.11G245300.01
ATGGTGTTAG CTTCAATTTC AATTGTATCT TCTTCATCTT CATTCCTCTC TGATTCTCCT TCCACTTCCG CTTCCACCAA
AACCAGACCT TTCCTCTTCC CTTCCTCAAA CCGAACCTCT CTTTTCGGCT TCCCCAGAGC ACCCCTTCCC AATGCTACCA
TCAGAGCCTC ATCACCCTCT TCTTCTTCCG CTTTCACACC GCAGGAAAAT GGGACGCCGG AGCAGTTCCT CGAGAACAAT
TCCATCGCCG ATTTCATGCG GTTCAAAAGC GGCGTCGAAG GTGGTGGCAG TTCCGAGTTG CAGACGGCTC TTGTCAGCTA
CAGGAAGAGG TTTCCTTGGT CCCTTTTGAG CCCTTTTCTT CAGGTTGACT TGGTTTCGAC AATTCACATC GCCGATGAAG
AGTATTTTCT GGCCCTTCAG AAGGAACTTG AAAGCTATGA TTGTGTCCTT TTTGAAATGG TAGCGAGCAG AGAAAGTTTA
GAGAGTAGAA GAAACGCTAC TGCTACAAAA AGGTTAAAAA GTTCACGCTC AAAGGGTTTT AACATTTTGG GATGCATCCA
GAGACAGATG GCTCAAATTC TTACACTTGA TTTCCAGTTA GATTGTCTCA ACTACCAGTC TTCAAATTGG TACCATGCAG
ATCTTGATTA CGAGACCTTT AAATTACTTC AGCTTGAAAA AGGTGAAAGC TTCTTCTCCT TTGCAAAAGA TATGACTCTT
AGGTCTACAA AGGCAGTATT ACAGCCAGCT TCAATTCCGG AAGATCTTGA CCCTTTGAGA TCCAAGCTAT TATGGGCTTC
ACGTGTACTT CCTATGCCAC TTGTTGGCCT TCTTATCATT GGAGGTGTTT GTACAGATGT GGGAAGTCAA GCATCAGAAT
ATCCCGAAAT TGAGGCACTG TCAAGGCTTG ATTTTGGTGC TGCAATGAAG GTCTTCCTTG CAAAGAGACT AACATCTGAG
TTCACTCTGG TGACAGCAGA TGTAGAGGAG AAATCAGTTA TAATTGGTGA GAGAAATAGA GTAGCAACAG AAGCCCTAAA
AGCAGCAATA GACAAAGGAC ACAATAGAAT TGCAATACTT TATGGGGGTG GCCACATGCC AGATCTTGGG AGGAGACTAA
GAGAGGAGTT TGATTTAGTC CCATCTAATG TGAAGTGGAT AACAGCTTGG TCCATAAGGA AAAGGGACCT AAATACTAAT
TCATTTCCAT TTCTGAAGAA GATTGCTAAG GCCTCAGGCT GGCCATTGAA CCGCTATCAG ACATTGGCAT TGCTCATCTT
TTCATCAGTC TTGGCATTGG ATCTGTGGTT CTGGGAGCTA TTCTTTGGCA CTGCAGTCAA TTGGGTCTCT GAACTTGGCT
CAGAACTTGT TCAGTATGTT GGTAATTCAC CAATGATATG A

>Vigan.11G245300.01
MVLASISIVS SSSSFLSDSP STSASTKTRP FLFPSSNRTS LFGFPRAPLP NATIRASSPS SSSAFTPQEN GTPEQFLENN
SIADFMRFKS GVEGGGSSEL QTALVSYRKR FPWSLLSPFL QVDLVSTIHI ADEEYFLALQ KELESYDCVL FEMVASRESL
ESRRNATATK RLKSSRSKGF NILGCIQRQM AQILTLDFQL DCLNYQSSNW YHADLDYETF KLLQLEKGES FFSFAKDMTL
RSTKAVLQPA SIPEDLDPLR SKLLWASRVL PMPLVGLLII GGVCTDVGSQ ASEYPEIEAL SRLDFGAAMK VFLAKRLTSE
FTLVTADVEE KSVIIGERNR VATEALKAAI DKGHNRIAIL YGGGHMPDLG RRLREEFDLV PSNVKWITAW SIRKRDLNTN
SFPFLKKIAK ASGWPLNRYQ TLALLIFSSV LALDLWFWEL FFGTAVNWVS ELGSELVQYV GNSPMI*