GBrowse Details

Vigan.11G241200.01

Basic Information:
Name: Vigan.11G241200.01
Multiple alignment
Variant Information
Position: Chr11:36503195..36505854 (- strand)
Length: 2660
Functional Information:
Description: Similar to ATP-dependent Clp protease adapter protein ClpS-like. [XP_004157424.1, Cucumis sativus]
GO: Biological Process: protein catabolic process (GO:0030163)
InterPro: Adaptor protein ClpS, core (IPR003769)
Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (IPR014719)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.09,4.24,168.44,1.05,3.86,0.31,13.07
Arabidopsis thaliana homolog: AT1G68660.1
Automatic updates:
Name: NM_001250882 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative ATP-dependent Clp protease adapter protein CLPS1, chloroplastic (LOC100306117), mRNA; nuclear gene for chloroplast product.
PubMed ID: 23898032 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:36503195..36503850 (- strand)
Length: 656
Type: three_prime_UTR
Position: Chr11:36503851..36504115 (- strand)
Length: 265
Type: CDS
Position: Chr11:36505279..36505429 (- strand)
Length: 151
Type: CDS
Position: Chr11:36505565..36505631 (- strand)
Length: 67
Type: CDS
Position: Chr11:36505632..36505854 (- strand)
Length: 223
Type: five_prime_UTR

>Vigan.11G241200.01 class=Sequence position=Chr11:36503195..36505854 (- strand)
AATAACCTCA AAAAATTGGG ATCTACACGT GTCACCATAT TAACGTGTAA AACCCAATTC AGTTTGCACC TTACAAAATT
CTCTTGACCA ATTTTTATAC CCAAAAAAAT CAGTGAGCTA ACGACAAAGA CAACATTGGA TTACTTATCT CACATTATTG
CTACCCTCTT ATTGTTACAG GAGCTGTCTG CTAAGTGTCA ACAAAGAGAC TCAAAGAGCA GCAATGGAGG CTGCATTAAG
CACTGCACTT GCTCTTTCAC CTAACCAACT ATTCAATGCA GTAAATCCTG GTACTATACC ATCTCCTCTT TCTAATTATG
TTTCATCTTT TTTTCATTAC CATATTAGTA CTGTACTATA GTTGTTTGTT TTTCTGATGT ATTTTCCAAA ATAATATAAG
GGTTCATTAC TTTTTGTATT CGCAGGAGAT AAAAATTTTG CTTTGAAATA TTGCAAAGAT CGTAGTGTTG TAATGACAAT
GGCAGCCACT GGAATATTAG GAAAAGGTGG AGGGTTGATT GAGAGGCCAA CCATAGAGAC AACAACACCT GGAAGGGAAT
CCGAATTTGA CGTAAGGTAA TACCAATATC AGGAACAGTG AGCACAATTG AGAGGATTTT CTCACTGTAT GATTATGCAG
AAGAATTGAA GAAACGTCTT GAAAATTCAC GTGTATGTCT GGATAATTTT TCTTACAGGT TAAAATTAAT GTTACCAAAG
ATTTAGTTTT GGTTCTTAAA AACCAAAATG GTAAAACCTT TCGCTTAGCT TCTGAGACAA CAGATTAGGC CTTTACAGAA
GTTATATTGA ATTTTGAATC TAACTTAATT CTATAAAATT AATTTATAAA ATGAAATTTG TATTTATTTA TATATTATAA
ATTTGTCTTA TTTTTAATTG GGTGAGACTT TCAACATTTA AATATGTTAT AAGAATAGAA AGGGAATTTT GGTGTAGTGT
AATTAGGAAA CTGTAACTAT TAGTTCAAGG TCAGAAATTT CCATTTTCAA CACTCAGCAC ACATTATATT TTGGAATCAG
TCCATCTAGC TAGATGCCAC AGAGAAAATG TATCATTTCC TCTGTTTTGG GACCTTTTCT CATTTGTAGT CTATCTTCTT
GTTTGCATTT TATTTAACTT TTAATCTTAG GCCAAGAAGA AGCACCTACA GTGTTTTCAT TTGATTTTTG TTTTCTTTTT
TTTTTTTTAA TTTTCATTAC TTTCTAATAA TATCTAAACA ATTTGAAAAG CTATAATTGA TGCTTGTTAA GTACAAACTT
GGACCCTTAA TTTCCTACTG TTTAGCAGGA GTATGAACTA GTTTTTAAAT TCCATAAGTA TCTTTCAGTT GAACTAAACT
ACTACAGCAA GAACTGAAAA CCACTGATGA AATGAAAGCA ATACTACATA TCACATCAAT ACTAATGCTT GATTTCTGGA
ACTGATCTTG TTGAAAGATG AAATGCCAAA GCTGTGTCAA TAGCAAATGT CCAAATTATG TTGTTATGTG TATTGAAGGT
TTCATTACTC ATGTGCCATA CTAGTTATGG TATTTCAACT GATAACAATT CAACTTTCAA TTTCAATGGG TGGTTCAAAT
TAAACAGCAT GTTGTAACTA TGAAGCAGAC AAGTGATCAA TTTCAATTTC TCCTTGTGCT CACTCTTATC TTTGTTGTTT
GTTCTTGTCT CATTTCATCA AATGTTTGAT AAAATCTTTG ATCACATGTT TTGTATCAGG AAATCGCGGA AAACATCTCC
ACCATTCCGA GTTTTGCTGC ATAATGACAA CTTCAACAAG AGAGAATATG TTGTGCAAGT GCTGATGAAG GTGATACCTG
GAATGACAAT TGATAATGCA GTTAACATCA TGCAGGAAGC ACATCATAAT GGATTAGCAG TGGTGATCAC ATGTGCTCAA
GTGGATGCTG AAGACCACTG CATGCAGTTG AGAGGAAACG GCCTTTTAAG CTCAATTGAG CCAGCTGATG GTGGTGGTTG
CTGATAGAAA AACAGATCAT TTCCATAGCC TAGTACTTTC TTACAAATTA CTCAGTTCCA TAATGTTCTT CTTTCCAATT
CCAACCATTA AACATGTCTG TATAGAAAAA TAATGACTAG TGTCTTTATA TAAGCAATAG CCAGAACAGA ACATAAAATT
TGGATGAAGA TGGTTGGTTG AAAGTAAAAA TTGAAGCACC AATTGATTAC ATAGAATGCT GCATACCTAA AAGAATAAAT
ACTACAGAGA ATGAGCTTTA AATGGCAGTG TTTGTTAGTG TCTTCAAAAG CATTTTAACT ATTCTAGTTT GCAGCATTAA
AAACAAACAG ATATGACTGA TATGTTCATC AGCACAGCAT TGGTTGCTTC CCCAAAGTTT AAATGCAGGT TGGTTGCAAT
CTTTGTTCCA GTAAGCAATG AAACGTGAAA ATGTGATCAT AGCTAGGAAA AAGAAAGTCT AGGAAACAAG AATAGCAATG
ACACTGACAT GCTTTTATGA CCAATGCAAC AACCTCAACA ACCAAGACAC ATTTAAGGAA TACATAAATT TGATGTCTTT
GAGATAGTAC AGTGTCTCTT GGTGCTTTGA CATTACAGCT CTACTTACTG CTGAAAAACT TGGATTGGAA ATGTTGTATC
TATGCAGTTT GACTTTGATC 

>Vigan.11G241200.01
AATAACCTCA AAAAATTGGG ATCTACACGT GTCACCATAT TAACGTGTAA AACCCAATTC AGTTTGCACC TTACAAAATT
CTCTTGACCA ATTTTTATAC CCAAAAAAAT CAGTGAGCTA ACGACAAAGA CAACATTGGA TTACTTATCT CACATTATTG
CTACCCTCTT ATTGTTACAG GAGCTGTCTG CTAAGTGTCA ACAAAGAGAC TCAAAGAGCA GCAATGGAGG CTGCATTAAG
CACTGCACTT GCTCTTTCAC CTAACCAACT ATTCAATGCA GTAAATCCTG GAGATAAAAA TTTTGCTTTG AAATATTGCA
AAGATCGTAG TGTTGTAATG ACAATGGCAG CCACTGGAAT ATTAGGAAAA GGTGGAGGGT TGATTGAGAG GCCAACCATA
GAGACAACAA CACCTGGAAG GGAATCCGAA TTTGACGTAA GGAAATCGCG GAAAACATCT CCACCATTCC GAGTTTTGCT
GCATAATGAC AACTTCAACA AGAGAGAATA TGTTGTGCAA GTGCTGATGA AGGTGATACC TGGAATGACA ATTGATAATG
CAGTTAACAT CATGCAGGAA GCACATCATA ATGGATTAGC AGTGGTGATC ACATGTGCTC AAGTGGATGC TGAAGACCAC
TGCATGCAGT TGAGAGGAAA CGGCCTTTTA AGCTCAATTG AGCCAGCTGA TGGTGGTGGT TGCTGATAGA AAAACAGATC
ATTTCCATAG CCTAGTACTT TCTTACAAAT TACTCAGTTC CATAATGTTC TTCTTTCCAA TTCCAACCAT TAAACATGTC
TGTATAGAAA AATAATGACT AGTGTCTTTA TATAAGCAAT AGCCAGAACA GAACATAAAA TTTGGATGAA GATGGTTGGT
TGAAAGTAAA AATTGAAGCA CCAATTGATT ACATAGAATG CTGCATACCT AAAAGAATAA ATACTACAGA GAATGAGCTT
TAAATGGCAG TGTTTGTTAG TGTCTTCAAA AGCATTTTAA CTATTCTAGT TTGCAGCATT AAAAACAAAC AGATATGACT
GATATGTTCA TCAGCACAGC ATTGGTTGCT TCCCCAAAGT TTAAATGCAG GTTGGTTGCA ATCTTTGTTC CAGTAAGCAA
TGAAACGTGA AAATGTGATC ATAGCTAGGA AAAAGAAAGT CTAGGAAACA AGAATAGCAA TGACACTGAC ATGCTTTTAT
GACCAATGCA ACAACCTCAA CAACCAAGAC ACATTTAAGG AATACATAAA TTTGATGTCT TTGAGATAGT ACAGTGTCTC
TTGGTGCTTT GACATTACAG CTCTACTTAC TGCTGAAAAA CTTGGATTGG AAATGTTGTA TCTATGCAGT TTGACTTTGA
TC

>Vigan.11G241200.01
ATGGAGGCTG CATTAAGCAC TGCACTTGCT CTTTCACCTA ACCAACTATT CAATGCAGTA AATCCTGGAG ATAAAAATTT
TGCTTTGAAA TATTGCAAAG ATCGTAGTGT TGTAATGACA ATGGCAGCCA CTGGAATATT AGGAAAAGGT GGAGGGTTGA
TTGAGAGGCC AACCATAGAG ACAACAACAC CTGGAAGGGA ATCCGAATTT GACGTAAGGA AATCGCGGAA AACATCTCCA
CCATTCCGAG TTTTGCTGCA TAATGACAAC TTCAACAAGA GAGAATATGT TGTGCAAGTG CTGATGAAGG TGATACCTGG
AATGACAATT GATAATGCAG TTAACATCAT GCAGGAAGCA CATCATAATG GATTAGCAGT GGTGATCACA TGTGCTCAAG
TGGATGCTGA AGACCACTGC ATGCAGTTGA GAGGAAACGG CCTTTTAAGC TCAATTGAGC CAGCTGATGG TGGTGGTTGC
TGA

>Vigan.11G241200.01
MEAALSTALA LSPNQLFNAV NPGDKNFALK YCKDRSVVMT MAATGILGKG GGLIERPTIE TTTPGRESEF DVRKSRKTSP
PFRVLLHNDN FNKREYVVQV LMKVIPGMTI DNAVNIMQEA HHNGLAVVIT CAQVDAEDHC MQLRGNGLLS SIEPADGGGC
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