GBrowse Details

Vigan.11G238200.01

Basic Information:
Name: Vigan.11G238200.01
Multiple alignment
Variant Information
Position: Chr11:36252719..36256065 (+ strand)
Length: 3347
Functional Information:
Description: Similar to Uncharacterized protein. [I1M2R5, Glycine max]
GO: Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: membrane (GO:0016020)
InterPro: t-SNARE (IPR010989)
SNARE-complex protein Syntaxin-18 N-terminal (IPR019529)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.67,8.02,5.26,5.01,9.10,5.58,7.20,6.02
Arabidopsis thaliana homolog: AT1G51740.1
Automatic updates:
Name: NM_001252973 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max syntaxin-81-like (LOC100801587), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:36252719..36253012 (+ strand)
Length: 294
Type: five_prime_UTR
Position: Chr11:36253013..36253090 (+ strand)
Length: 78
Type: CDS
Position: Chr11:36253269..36253352 (+ strand)
Length: 84
Type: CDS
Position: Chr11:36253472..36253576 (+ strand)
Length: 105
Type: CDS
Position: Chr11:36254277..36254420 (+ strand)
Length: 144
Type: CDS
Position: Chr11:36254602..36254844 (+ strand)
Length: 243
Type: CDS
Position: Chr11:36254957..36255088 (+ strand)
Length: 132
Type: CDS
Position: Chr11:36255649..36255792 (+ strand)
Length: 144
Type: CDS
Position: Chr11:36255793..36256065 (+ strand)
Length: 273
Type: three_prime_UTR

>Vigan.11G238200.01 class=Sequence position=Chr11:36252719..36256065 (+ strand)
AAACGAATCG TTTAGATCTC ATAACAGCGT CGTCTTCGTC TTCGTCTTCT TTTCTTCTTC TTCTTCCTCC CTTTGTTTAG
GTTTCGCAGA GCTTCCTTCA GCGTCCTTCT CCGACCCATT TACCTGTATT TCACTCTTTC AACCACAACT ACACCATACA
ATCCTTCCAA TTTTGAAATT GGAACTCGTT GAATCGTATT GTATCGTATC GTATCCTATC ATCATATCGC GTCGCACGAT
ATCTCGGTTC CTTTGCTTCT TTCTGAATTC CCATTGATCG ATCGCAATTG AGAGATGGTA AAAGCGAGGG ACAGAACCGA
GGATTTCAAA GATACCGTGC GCCGCACCGC TCACTCTTTG GGCTACGACG AGGTTCGCCA TTTAGAATTT TGCGATCTTC
ATTATTCAAA TCGTTAGTTT TTCTAGTGTG CGAAAATGCC ACATTTGGGT TTGGCTAAAT AGGGTTTATG AACACTTGTT
GATTCTAGTT GGTTATTGGT TTGAGCATTG AATGGTTTCT AATCTCACCG TGATGGAATT CGTTTGGCAG GCTAAAGTAG
CGTCTATTAT GGCATCTTTC ATCATCCATA AACCGCCACA AAGGTCTCCG TTTTCCAAAG CCGCATTGAA GACGGTAAAC
TCGGCTTTCA AATTGTTCTT TTCCGTGAGC TATGATTAAT TTATTCGTGG TTGTAGTTAT GTGCTGTGCT AATTTTATGT
GATGTGACTT TTTTTCTTGG TCTTTGTTTT TAGCTGGAGA GTATTGGAGA GCTGGATCAG TTTTTGTTGA AGCATAGAAA
GGACTATACG GATCTGCATC GCACCACAGA AAAGGAAAGA GATAGCATCG AGCATGAAGT AAGCTTGGAT TCTGGTTTTA
AGAGTATTCT GGTGTCATGT TTGATGATTG GAAAATAGTA CTTATTGGCA ATAGTGTAGT GTTTCTCCTT AGGCTTGATT
TCATACTTGT TGGCTGGCAT TGATGATTTA GAGCTTTCTC ACCTCTGTGC TGTACATGAT AAGACATGAG TTAGTTTACT
TGGGCAGCCT TGCGATTTGG TCCGTGAAGT CTGTTCCTTT ATACATGTTG TCTAGGGGAA GAAACGGCCA ATAGAAAGAG
AAATTACCAA TAGGAAGAAA CTGATGAAGA AGCGAGTGAT AGAAGAGATT AGGATATATA TGTTTGGGAC TAACGTGTTA
TTTGTTTATG GTTCCCTCTT AGGCTGGTAT TAATTTTATT TTTCATTGCT AGCACTATCA TTATTTAATC ACATTGGTTC
TCATTTTTAT TTCCTTCCGA AGGGGTTCTC ACACATCAGT GCACAGTTGA ATTTTCAAAG GTTGTTTTTT TTTTTGTATT
TGTTGTTCAC ACCATTCTTT CAAAGTTCAC AGCTCACAAC AATATATAGA TAGAACTTAT TTTAAGCCTG CCAAGCAATT
TGGTCTTTAC CTGCGTATAT AATTTTTATT AGCCTTTTCT GTGTTTTTGA GTCAAAAAGA ATGATATCTC TTAATCGTAT
AGCATCAGTT TCTCTTAATT GTAATTAATT TGGTGCAGGT TAGTACTTTT ATTAAAACAT GCCAGGAACA AATTGATATT
CTTAAGAATA GTATAAATCA AGAAGAGGAA ACTTCCAAAG GTTGGCTTGG CATTGCGACT ACAAAATCTA ATGCCGACGT
GATTGCCCAC AAACATGGGG TGGTGAGGAC ATCTTGTGCT TGTTGATTTT TCAGTTATTA GTTACGTATG TGGGTTGAGC
AGTTGTATGA TCCCTTATGC CAGAATGTAT GCTTGATAAT GTTATCTGAA TACTAACAAG TTCATGAATT GAGATGGCTA
TTTACTTTTT TGTATGCTAA CGTTTACTTG GGGCCAATTT TAGGTTCTAA TTTTAAGTGA GAGACTCCAT ACAGTCACTG
CACAGTTTGA TCAGCTAAGA GCTGTACGCT TCCAGGATGC TATTAATAAA GCAATACCAC GGAGAAAACT TAACCGTGTA
ACCAGAAAAG ATTCTGCAGA AACCTCAAAA CCAGATGGCA TGGACCTCAG AGAACCTGAA GAGTTACGTG CTGAGCCTCT
ACGAGTTCAG CAACAACTCT TGGACGATGA AACACGTGCC CTGCAGGTGT AAAAATCAAA TTCTTTATGA ATTTCTGTAG
GTCTTATTCT GTCGTTTGTT TAATTGAAGA TTTTAGATTC TTGTGACTAA CCCTTTGCCA TTGTTTCTTT TCCTGTAGGT
GGAATTGACT AATCTTCTCG ATACAGTTCA AGAAACCGAA ACTAAGATGG TGGAAATGTC TGCACTAAAT CACCTCATGT
CTACTCATGT TTTGCAGCAA GCTCAGCAAA TTGAGCATCT TTATGAGCAG GTTAGATAAC ATATCATATT TTCCCCCCCT
GTTTTCTTGT TTTTTGGGAA CACATGAAGG CTGCCATCTA TCATGTCTAT ACTGCCCACC CCCCGTCATT AACCCACCTT
CCAAGTATAG CCAAGTAATG TGAAACTGGA ATTAGTGTAG CAGGAATGGA AATAGGTCAC GTATATAAAA ATAGGATTTG
GTATATTGAT TCATCTCAAA TTCAAGGCTA AATCTGCAAA TCTTAGTAAT CAGCTATCTT AATAGTATGC AAAACTTGTT
GTCCCTATAA TAATAAGTGA CTAAAATCTT GAAACAAATT TATCAAAAAT AACCCCCAAT AGGCAAGAAC TCCAAGAAAA
CTAAAATTTC CGTAATTACA ATGAATAGTC AATATTTTAT ACACCTAATA ATGCTGATAT CCACATTTTG TGTTTTAATT
AAAATCGTTA AGGTATAATA TTTTTCGCAG GTAGTGGACC ACAGTGCTTG TAATTTGTTT TATTCTGCTT AAAAATAGTT
GCATTTCCAA TTTCTAAGAA ATATAATCGG GCTTCTGCTG GCTTTTACAG GCTATTGAAG CCACTAAGAA TGTTGAGCTC
GGTAACAAAG AACTCTCACA AGCCATTCAG CGGAATAGCA GCAGCAGGAC ATTTCTTTTA CTGTTTCTAT TTGTGCTTAC
TTTTTCAATC CTCTTTCTTG ATTGGTATAG TTAAATGCAT TTTGTTTTCT GCTAGCACAG TGAATCTTCT TATAGAAACT
CTGCCCTCTC TCGCTTTTCC CTATTGCTGT CAATATCTGT TTTTACCCCA AGGAAGGCAT CTTTTTCTAG ATGCAATGTA
TTTGGTTATT GGAGAAATAA TTTTAGTGAT CAATTTATGA AGGGAATTAC AAAAGGAGAC CTCCCTACTG TTTTGTAGGA
AGAGAGAGAA TGATGAATAT TTTATTTGGT TTGTAAATTT GAAGAGATAA AAGGAAAGTG AGGGACA

>Vigan.11G238200.01
AAACGAATCG TTTAGATCTC ATAACAGCGT CGTCTTCGTC TTCGTCTTCT TTTCTTCTTC TTCTTCCTCC CTTTGTTTAG
GTTTCGCAGA GCTTCCTTCA GCGTCCTTCT CCGACCCATT TACCTGTATT TCACTCTTTC AACCACAACT ACACCATACA
ATCCTTCCAA TTTTGAAATT GGAACTCGTT GAATCGTATT GTATCGTATC GTATCCTATC ATCATATCGC GTCGCACGAT
ATCTCGGTTC CTTTGCTTCT TTCTGAATTC CCATTGATCG ATCGCAATTG AGAGATGGTA AAAGCGAGGG ACAGAACCGA
GGATTTCAAA GATACCGTGC GCCGCACCGC TCACTCTTTG GGCTACGACG AGGCTAAAGT AGCGTCTATT ATGGCATCTT
TCATCATCCA TAAACCGCCA CAAAGGTCTC CGTTTTCCAA AGCCGCATTG AAGACGCTGG AGAGTATTGG AGAGCTGGAT
CAGTTTTTGT TGAAGCATAG AAAGGACTAT ACGGATCTGC ATCGCACCAC AGAAAAGGAA AGAGATAGCA TCGAGCATGA
AGTTAGTACT TTTATTAAAA CATGCCAGGA ACAAATTGAT ATTCTTAAGA ATAGTATAAA TCAAGAAGAG GAAACTTCCA
AAGGTTGGCT TGGCATTGCG ACTACAAAAT CTAATGCCGA CGTGATTGCC CACAAACATG GGGTGGTTCT AATTTTAAGT
GAGAGACTCC ATACAGTCAC TGCACAGTTT GATCAGCTAA GAGCTGTACG CTTCCAGGAT GCTATTAATA AAGCAATACC
ACGGAGAAAA CTTAACCGTG TAACCAGAAA AGATTCTGCA GAAACCTCAA AACCAGATGG CATGGACCTC AGAGAACCTG
AAGAGTTACG TGCTGAGCCT CTACGAGTTC AGCAACAACT CTTGGACGAT GAAACACGTG CCCTGCAGGT GGAATTGACT
AATCTTCTCG ATACAGTTCA AGAAACCGAA ACTAAGATGG TGGAAATGTC TGCACTAAAT CACCTCATGT CTACTCATGT
TTTGCAGCAA GCTCAGCAAA TTGAGCATCT TTATGAGCAG GCTATTGAAG CCACTAAGAA TGTTGAGCTC GGTAACAAAG
AACTCTCACA AGCCATTCAG CGGAATAGCA GCAGCAGGAC ATTTCTTTTA CTGTTTCTAT TTGTGCTTAC TTTTTCAATC
CTCTTTCTTG ATTGGTATAG TTAAATGCAT TTTGTTTTCT GCTAGCACAG TGAATCTTCT TATAGAAACT CTGCCCTCTC
TCGCTTTTCC CTATTGCTGT CAATATCTGT TTTTACCCCA AGGAAGGCAT CTTTTTCTAG ATGCAATGTA TTTGGTTATT
GGAGAAATAA TTTTAGTGAT CAATTTATGA AGGGAATTAC AAAAGGAGAC CTCCCTACTG TTTTGTAGGA AGAGAGAGAA
TGATGAATAT TTTATTTGGT TTGTAAATTT GAAGAGATAA AAGGAAAGTG AGGGACA

>Vigan.11G238200.01
ATGGTAAAAG CGAGGGACAG AACCGAGGAT TTCAAAGATA CCGTGCGCCG CACCGCTCAC TCTTTGGGCT ACGACGAGGC
TAAAGTAGCG TCTATTATGG CATCTTTCAT CATCCATAAA CCGCCACAAA GGTCTCCGTT TTCCAAAGCC GCATTGAAGA
CGCTGGAGAG TATTGGAGAG CTGGATCAGT TTTTGTTGAA GCATAGAAAG GACTATACGG ATCTGCATCG CACCACAGAA
AAGGAAAGAG ATAGCATCGA GCATGAAGTT AGTACTTTTA TTAAAACATG CCAGGAACAA ATTGATATTC TTAAGAATAG
TATAAATCAA GAAGAGGAAA CTTCCAAAGG TTGGCTTGGC ATTGCGACTA CAAAATCTAA TGCCGACGTG ATTGCCCACA
AACATGGGGT GGTTCTAATT TTAAGTGAGA GACTCCATAC AGTCACTGCA CAGTTTGATC AGCTAAGAGC TGTACGCTTC
CAGGATGCTA TTAATAAAGC AATACCACGG AGAAAACTTA ACCGTGTAAC CAGAAAAGAT TCTGCAGAAA CCTCAAAACC
AGATGGCATG GACCTCAGAG AACCTGAAGA GTTACGTGCT GAGCCTCTAC GAGTTCAGCA ACAACTCTTG GACGATGAAA
CACGTGCCCT GCAGGTGGAA TTGACTAATC TTCTCGATAC AGTTCAAGAA ACCGAAACTA AGATGGTGGA AATGTCTGCA
CTAAATCACC TCATGTCTAC TCATGTTTTG CAGCAAGCTC AGCAAATTGA GCATCTTTAT GAGCAGGCTA TTGAAGCCAC
TAAGAATGTT GAGCTCGGTA ACAAAGAACT CTCACAAGCC ATTCAGCGGA ATAGCAGCAG CAGGACATTT CTTTTACTGT
TTCTATTTGT GCTTACTTTT TCAATCCTCT TTCTTGATTG GTATAGTTAA 

>Vigan.11G238200.01
MVKARDRTED FKDTVRRTAH SLGYDEAKVA SIMASFIIHK PPQRSPFSKA ALKTLESIGE LDQFLLKHRK DYTDLHRTTE
KERDSIEHEV STFIKTCQEQ IDILKNSINQ EEETSKGWLG IATTKSNADV IAHKHGVVLI LSERLHTVTA QFDQLRAVRF
QDAINKAIPR RKLNRVTRKD SAETSKPDGM DLREPEELRA EPLRVQQQLL DDETRALQVE LTNLLDTVQE TETKMVEMSA
LNHLMSTHVL QQAQQIEHLY EQAIEATKNV ELGNKELSQA IQRNSSSRTF LLLFLFVLTF SILFLDWYS*