GBrowse Details

Vigan.11G225100.01

Basic Information:
Name: Vigan.11G225100.01
Multiple alignment
Variant Information
Position: Chr11:35156543..35159551 (+ strand)
Length: 3009
Functional Information:
Description: Similar to Aldose 1-epimerase. [V7C5Y1, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: hexose metabolic process (GO:0019318)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: isomerase activity (GO:0016853)
Molecular Function: carbohydrate binding (GO:0030246)
InterPro: Aldose 1-/Glucose-6-phosphate 1-epimerase (IPR008183)
Galactose mutarotase-like domain (IPR011013)
Glycoside hydrolase-type carbohydrate-binding, subgroup (IPR014718)
Aldose 1-epimerase (IPR015443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.92,10.83,30.21,20.59,5.71,86.42,28.68,29.74
Arabidopsis thaliana homolog: AT3G17940.1
Automatic updates:
Name: NM_001255125 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aldose 1-epimerase-like (LOC100776238), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:35156543..35156622 (+ strand)
Length: 80
Type: five_prime_UTR
Position: Chr11:35156623..35156833 (+ strand)
Length: 211
Type: CDS
Position: Chr11:35156931..35156980 (+ strand)
Length: 50
Type: CDS
Position: Chr11:35157826..35157952 (+ strand)
Length: 127
Type: CDS
Position: Chr11:35158383..35158487 (+ strand)
Length: 105
Type: CDS
Position: Chr11:35158580..35159202 (+ strand)
Length: 623
Type: CDS
Position: Chr11:35159203..35159551 (+ strand)
Length: 349
Type: three_prime_UTR

>Vigan.11G225100.01 class=Sequence position=Chr11:35156543..35159551 (+ strand)
AGAGAAACAG GAAAATGTAA CAGTAGAATT TTGTAACAGC TGGTGAAACA TTGTTTGTTA TTATTACCTC GTAGCAGTTA
ATGTTATGTT GGATCTGTTC TTATATACGA GTTGTGTTAT TCAATCTGAT CACTTCAGTC ACCTTCATAC TCTTTTCCTC
TCTCTCTTCA ATTCCAATGG CGGATCAGAG CCCCAAACCA GAGACCTTCG AGCTCAGCAA TGGCAGCATG AAGATTCTCC
TCACCAATCT CGGATGCACC ATCATCTCCT TATCTGTTCC CGGAAAAGAT GGTTTTTTTT TCCCGTTCCA ATTCCTCATT
TTCAGCTTTT CGTTACCTTC AATCATGTTT ACGTTTTACT GATTCGTGAC ATGCTCTCTG TTTTGAAGGG GTGTTATCCG
ACGTCGTTCT TGGCCTCGAC TCTGTTGAAT CCTATGAGGT CCCGTTTAAT TTTGCGATTT CTTTTATTGA AATTCTGGCG
TCAATTGTAA TGGGTAGTTT TGCTTTGGCT TAGAAAGGCT TGTTTGGTTG ATGGGTATCA TGTGTCCTTT TCAAAATTCT
ACCTTTCTAG TTTAAACTAT AAAGTGATGG GTGCCGTGTG AGAATCCATG GAAGTTATCT TTTTGTGACT CCAATGTGCC
TATTGTCATT CTTATTTAGT CAAATTTTAT ACTATTTGTT TTTTTTTTAA GTTTTTAGTT TGCTTGGTTA AAAAAGAAGA
TTTTGCATAG AAGTTCTTAA AGAGGGACAA TGTACATTGC CAAACTCTAT GTACAAAAGA GTTTAGTTTA ATTTGAATGA
ACTTCCATGT TGAGTAATGA TATATAGCCA AAGTAACAGA TAAGTAGGGA ACAATCTCTG TCTCCTGAGC TTAATCAGCT
GATTTTAAGG ATTGAAATAG ATTTAAACTC AAATTCTACT ATGATATTAG AGTATCTGCT CACCAATTAT CGAGGTTATT
GGATCACCTG CAAATGTTTT CATCTTGTAA AATTCATGAT TGAAATGTTT CGTCCTTGAC ATGAGGAAGT GTTAGAGATT
CCTCATTGGT TAAATTTTGA GGTTGGTTTA GAGCTAAACT CAAATTCAAA TTTTAAGACA CCTCGTACGA TTGAAGTACA
ATTCTTGTAA AACCTAACAC TTTTACCACT TATGACAGTA TGTGATTGAT GACAATATTA AAAAACCTTT ACACATTTAG
TGTACTTTCA TCTAATTCAA GATAAGCTTT TCTAGCTTCG GGAATTTATG ATTGATTTAC TGAATTATGT TGCTTGCAAG
CAGAAAGGTC TTTCTCCATA TTTTGGCTGC ATTGTGGGTC GGGTTGCAAA CCGAATCAAG GATGGCAAAT TTACACTTGA
TGGAGTTCAG TACACTTTGC CTCTGAACAA ACCCCCAAAC AGTCTCCATG GTATCAATTC TGTGTTTTCA CACTCTTCAT
TTGTGAATTC TCCAATTGTG CATTGTGTAG TTAAACTAAT CCTTTCAGAT TTTTCTGTCC ATTTATTATG ATTCAAGTTA
AAAAAAAATA AAGCTTTTTG CCATCTGAAG TACTGGATCA TGGAATGTTT GTGTTGATCA CTATCTATTT CCTCAATTCC
ATTGAAAACT GGCTTTGAAA ATAAAGGTTT TGTCAAGCAA AAACATTACT TGTTATGACG GACTATATAA TGACGATGGA
TAAATTTTAT TTTGTGCTGT TTTCACTGAT AAGATGATTC TGCAGGACTT TTATTTTGAA ATAACACAAG TCTCAAGAGT
TTCCTAAATA AAGAAATTAA AAAAATGCAT AAATTTTGTT TGCTGTTTTC ATGACACCTT ATCCACTCTC CAAATTTCAG
GTGGAAATAT TGGGTTTGAT AAGAGGGTAT GGGAGGTAGT TGAACATAAA AAAGGAGAAA CTCCTTCAAT CACTTTCAAG
TATCACAGTC AGGATGGAGA AGAAGGTAGT GTCTGATCTC TCTTTCTTCC TCACTTTCAG ACATCATTAT GCTCTTCATC
TTTTCCTTCA TTCAGCTATT GTTTTCTGTT GTACAAGGTT ATCCTGGGGA TATCACTGTT ACAGCCACAT ACACCCTCAC
CTCAAACACA ACTCTGAGGC TTGACATGGA AGGAGTGCCA AAGGACAAAC CCACCATAGT TAACTTAGCT CAGCACACCT
ACTGGAACTT AGCTGGTCAC AACTCAGGGA ATGTACTTGA CCATTCAATT CAGATATGGG CTAATAATAT CACTCCTGTA
GATGAGAATA CTGTGCCAAC AGGTGAAATC ATGGCAGTGA AGGGTACCCC TTTTGATTTT ACATCTGAGA AAAGAATAGG
GAACGATATT AGTGAAGTTG GATTGGGATA TGACCACAAT TTTGTGCTGG ATTGTGGAGA AGAGAAAGAT GGTTTGAGGC
ATGTTGCCAG AGTGAGGGAT CCATCAAGTT CAAGAGTACT TAACTTGTGG ACAACTGCCC CTGGTGTGCA ATTTTACACT
GGAAACTATG TTAATGGTGT TAAAGGAAAA GGAGGTGCCA TATATGAAAA ACATGCAGGG TTATGTCTGG AGACACAAGG
ATTCCCTAAT GCTATAAACC AACCAAATTT TCCATCTGTT GTGGTTCGTC CGGGGGAGAA GTATAGACAC ACGATGTTGT
ATGAGTTTTC AATTGAGTGA TGTTGTATGA GTGGCATATC AATGAGGTAG ACATCTTGTA TTGCATATTA TGATTTAGAA
GCAACTTTGG CTTCTGAAAT TCCTAGTTGT TTGCATTCAA ATAATAATCA CTTGTCTCAA GTTTGAATTC TCCAATGTAA
ACTGTGCTGT TTTGCTCTCC TAAATATGGG TGAGACCGTA GACTTTTTTT TGGTAAGTAC AATGAGGTTG TTGTTTCATG
AATTGTTGTC GAAGTTGAGA AACAGTTTTC CTAATACCTA GAAACTTCAA CCTAGACTGC ATAACAACAC AATGTTCCTT
ATATATACAC ATAAGTGTGA GTACTTTCAA TGACAAGTCA AAATCTCAA

>Vigan.11G225100.01
AGAGAAACAG GAAAATGTAA CAGTAGAATT TTGTAACAGC TGGTGAAACA TTGTTTGTTA TTATTACCTC GTAGCAGTTA
ATGTTATGTT GGATCTGTTC TTATATACGA GTTGTGTTAT TCAATCTGAT CACTTCAGTC ACCTTCATAC TCTTTTCCTC
TCTCTCTTCA ATTCCAATGG CGGATCAGAG CCCCAAACCA GAGACCTTCG AGCTCAGCAA TGGCAGCATG AAGATTCTCC
TCACCAATCT CGGATGCACC ATCATCTCCT TATCTGTTCC CGGAAAAGAT GGGGTGTTAT CCGACGTCGT TCTTGGCCTC
GACTCTGTTG AATCCTATGA GAAAGGTCTT TCTCCATATT TTGGCTGCAT TGTGGGTCGG GTTGCAAACC GAATCAAGGA
TGGCAAATTT ACACTTGATG GAGTTCAGTA CACTTTGCCT CTGAACAAAC CCCCAAACAG TCTCCATGGT GGAAATATTG
GGTTTGATAA GAGGGTATGG GAGGTAGTTG AACATAAAAA AGGAGAAACT CCTTCAATCA CTTTCAAGTA TCACAGTCAG
GATGGAGAAG AAGGTTATCC TGGGGATATC ACTGTTACAG CCACATACAC CCTCACCTCA AACACAACTC TGAGGCTTGA
CATGGAAGGA GTGCCAAAGG ACAAACCCAC CATAGTTAAC TTAGCTCAGC ACACCTACTG GAACTTAGCT GGTCACAACT
CAGGGAATGT ACTTGACCAT TCAATTCAGA TATGGGCTAA TAATATCACT CCTGTAGATG AGAATACTGT GCCAACAGGT
GAAATCATGG CAGTGAAGGG TACCCCTTTT GATTTTACAT CTGAGAAAAG AATAGGGAAC GATATTAGTG AAGTTGGATT
GGGATATGAC CACAATTTTG TGCTGGATTG TGGAGAAGAG AAAGATGGTT TGAGGCATGT TGCCAGAGTG AGGGATCCAT
CAAGTTCAAG AGTACTTAAC TTGTGGACAA CTGCCCCTGG TGTGCAATTT TACACTGGAA ACTATGTTAA TGGTGTTAAA
GGAAAAGGAG GTGCCATATA TGAAAAACAT GCAGGGTTAT GTCTGGAGAC ACAAGGATTC CCTAATGCTA TAAACCAACC
AAATTTTCCA TCTGTTGTGG TTCGTCCGGG GGAGAAGTAT AGACACACGA TGTTGTATGA GTTTTCAATT GAGTGATGTT
GTATGAGTGG CATATCAATG AGGTAGACAT CTTGTATTGC ATATTATGAT TTAGAAGCAA CTTTGGCTTC TGAAATTCCT
AGTTGTTTGC ATTCAAATAA TAATCACTTG TCTCAAGTTT GAATTCTCCA ATGTAAACTG TGCTGTTTTG CTCTCCTAAA
TATGGGTGAG ACCGTAGACT TTTTTTTGGT AAGTACAATG AGGTTGTTGT TTCATGAATT GTTGTCGAAG TTGAGAAACA
GTTTTCCTAA TACCTAGAAA CTTCAACCTA GACTGCATAA CAACACAATG TTCCTTATAT ATACACATAA GTGTGAGTAC
TTTCAATGAC AAGTCAAAAT CTCAA

>Vigan.11G225100.01
ATGTTATGTT GGATCTGTTC TTATATACGA GTTGTGTTAT TCAATCTGAT CACTTCAGTC ACCTTCATAC TCTTTTCCTC
TCTCTCTTCA ATTCCAATGG CGGATCAGAG CCCCAAACCA GAGACCTTCG AGCTCAGCAA TGGCAGCATG AAGATTCTCC
TCACCAATCT CGGATGCACC ATCATCTCCT TATCTGTTCC CGGAAAAGAT GGGGTGTTAT CCGACGTCGT TCTTGGCCTC
GACTCTGTTG AATCCTATGA GAAAGGTCTT TCTCCATATT TTGGCTGCAT TGTGGGTCGG GTTGCAAACC GAATCAAGGA
TGGCAAATTT ACACTTGATG GAGTTCAGTA CACTTTGCCT CTGAACAAAC CCCCAAACAG TCTCCATGGT GGAAATATTG
GGTTTGATAA GAGGGTATGG GAGGTAGTTG AACATAAAAA AGGAGAAACT CCTTCAATCA CTTTCAAGTA TCACAGTCAG
GATGGAGAAG AAGGTTATCC TGGGGATATC ACTGTTACAG CCACATACAC CCTCACCTCA AACACAACTC TGAGGCTTGA
CATGGAAGGA GTGCCAAAGG ACAAACCCAC CATAGTTAAC TTAGCTCAGC ACACCTACTG GAACTTAGCT GGTCACAACT
CAGGGAATGT ACTTGACCAT TCAATTCAGA TATGGGCTAA TAATATCACT CCTGTAGATG AGAATACTGT GCCAACAGGT
GAAATCATGG CAGTGAAGGG TACCCCTTTT GATTTTACAT CTGAGAAAAG AATAGGGAAC GATATTAGTG AAGTTGGATT
GGGATATGAC CACAATTTTG TGCTGGATTG TGGAGAAGAG AAAGATGGTT TGAGGCATGT TGCCAGAGTG AGGGATCCAT
CAAGTTCAAG AGTACTTAAC TTGTGGACAA CTGCCCCTGG TGTGCAATTT TACACTGGAA ACTATGTTAA TGGTGTTAAA
GGAAAAGGAG GTGCCATATA TGAAAAACAT GCAGGGTTAT GTCTGGAGAC ACAAGGATTC CCTAATGCTA TAAACCAACC
AAATTTTCCA TCTGTTGTGG TTCGTCCGGG GGAGAAGTAT AGACACACGA TGTTGTATGA GTTTTCAATT GAGTGA

>Vigan.11G225100.01
MLCWICSYIR VVLFNLITSV TFILFSSLSS IPMADQSPKP ETFELSNGSM KILLTNLGCT IISLSVPGKD GVLSDVVLGL
DSVESYEKGL SPYFGCIVGR VANRIKDGKF TLDGVQYTLP LNKPPNSLHG GNIGFDKRVW EVVEHKKGET PSITFKYHSQ
DGEEGYPGDI TVTATYTLTS NTTLRLDMEG VPKDKPTIVN LAQHTYWNLA GHNSGNVLDH SIQIWANNIT PVDENTVPTG
EIMAVKGTPF DFTSEKRIGN DISEVGLGYD HNFVLDCGEE KDGLRHVARV RDPSSSRVLN LWTTAPGVQF YTGNYVNGVK
GKGGAIYEKH AGLCLETQGF PNAINQPNFP SVVVRPGEKY RHTMLYEFSI E*