GBrowse Details

Vigan.11G222200.01

Basic Information:
Name: Vigan.11G222200.01
Multiple alignment
Variant Information
Position: Chr11:34833246..34837946 (- strand)
Length: 4701
Functional Information:
Description: Similar to Uncharacterized protein. [C6TKV3, Glycine max]
GO: Biological Process: UMP biosynthetic process (GO:0006222)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: dihydroorotate dehydrogenase activity (GO:0004152)
Molecular Function: dihydroorotate oxidase activity (GO:0004158)
InterPro: Dihydroorotate dehydrogenase domain (IPR005720)
Dihydroorotate dehydrogenase, class 1/ 2 (IPR012135)
Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:75.89,40.93,65.78,50.34,63.49,49.22,35.16,28.00
Arabidopsis thaliana homolog: AT3G17810.1
Automatic updates:
Name: NM_001252829 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAD-dependent dihydropyrimidine dehydrogenase subunit PreA-like (LOC100804632), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:34833246..34833572 (- strand)
Length: 327
Type: three_prime_UTR
Position: Chr11:34833573..34833729 (- strand)
Length: 157
Type: CDS
Position: Chr11:34833848..34833957 (- strand)
Length: 110
Type: CDS
Position: Chr11:34834372..34834558 (- strand)
Length: 187
Type: CDS
Position: Chr11:34834648..34834760 (- strand)
Length: 113
Type: CDS
Position: Chr11:34835261..34835431 (- strand)
Length: 171
Type: CDS
Position: Chr11:34835524..34835787 (- strand)
Length: 264
Type: CDS
Position: Chr11:34837275..34837550 (- strand)
Length: 276
Type: CDS
Position: Chr11:34837551..34837946 (- strand)
Length: 396
Type: five_prime_UTR

>Vigan.11G222200.01 class=Sequence position=Chr11:34833246..34837946 (- strand)
GTAACTTTTT CCCATGCAGA AAGAATATCC ATCCATGTTC CTTCCCCACA AAATCAATGA ATCCAAACTA CAGTGTTATT
AGTTTTATGC AATATATAAT ATTTTGCTAA CAAAATTTTC CCCCAAAATC CTTATAATAT TCTTTCACAG TCATTCTCAC
ATGTTAGTCC AATTCTATGA AGGAATTGAA TATGGTTTCT CCCAAACTTA TCCGATACAA TAAACCAAAT GCTAGAAACG
AAACAAGAGA TTCATAATTG CACGTTCTCT TTTGTTGTCT CCAGCTCATA GAATATCATA TCAGATTCAG AATTTCAGAT
TCTCCCTTTA TTCTTCCTAT TCATCACCTT CTCCTTCCCC GAGCTGCTGT AGAAAGTTGT GATTTTTACT TTACAGATGG
CATCTTTGAG CATGACCCAG ATCAGAGCTG GGAATTGGGC ATCTGGGTTT GGCTTGAATC GGGCTGGGAA GGTTCAGGTT
GGTCCCAGCA GCAGAGTTGG ATTTAAGGTG TTTGCTTCAG AGACTCAGGC TACAGAGCCT GATCTTAGCG TCACTGTCAA
TGGGTTGCAC ATGCCCAACC CCTTTGTTAT TGGGTCAGGT CCTCCAGGAA CCAATTACAC TGTCATGAAG AGGGCCTTTG
ATGAAGGTTG GGGTGCTGTG ATTGCCAAAA CTGTAAGCCT TTTTTACTTA CGGCCTCCTT TTCTGCATTA GATTAGTTTG
TGTGTTTAAA GTGTTGTTTG GTTTCTTGGT TTGTAAATTG TAATTTTTGA ATTAAGGCTT GAAATCGGAG AGTTTGTGTT
TTGCTGTCTG AAAGACCAAT CTTTTGATCT TATGTTCTGC AAAAATTGGA TTATGCCATC ACGTTTAGTT ATTAGTTATT
AGCTTCCGTT GGTTGTCCTG TTATCAAGTT ATTATAATCT TCATGATTTG TTATAGGTGA AACTTGTTGA TGTTCCTGGT
AGATCATCGA TTTTTCTCTT GAATCTTCAA TTGTTGTTGA TTCTGTATTT AGGTGTATTT TATAGTTATG CTTTTGGTTT
CTTTCTTTCT CAAGGGTGTA GTGTAGCTGT AGATAACATA ATTTTAGTGA CTATAGTGAT AGAGATGCTA GCGTGGGAAG
TGCGTATGGT GCTAAAATAA ACTTTTATTT GTTTGGCATA TTGTATGGAA GGAATATTGA CAAGTACCGC ACAATCCGTC
TTCATAGCTT ACTATTTTGG CTGTTGAAAG TATGAACATT TTGTACTTCA AGACTGTCTA CAGGTGAGTT GCTGTATGAA
CAACTCATTA ATAGGCTTTC AAAACATCAG AAGTATTAAA CTTCAAAATG TTTTCTTTTT GGTTAATCCT TTGGCTTCCA
TTGGATAGAA TTGATCTAAT CATAAAGCAG TCAAGTTTCT ACTTTCTCGA TTTTTTTACA TTTCTTTTAG ATCTGTTTTA
ATTGTTTTAT GGGAAAGTAA ACTTTAATAA TCTGTAAAAT ATAATGAATT AATGCAATGA GTTTATCATC ATAACTCACA
ATGTGAATAC ATTCCATGAT ACAACATTTT GTTTTTGATA GCTTTCTAAT TTGTTGCCAT AGAGTGTAAG TTTCCTGTGA
AATTGCTTTC TGTCTATCAA ATTTAACCAA TTCCTCTTGA AGTGTTCCTT TTCCGTTGAA CCATAAAATT TATCTAAAAG
AATTAGGAAA TTGAATTCAT GACCAACAGA ATTACCATTA TCAGATGATT GTAAATTGAT GGTGATTTAC TGTCATGAAT
TGATAAAGCT CCTGTGGTAC TGTATTTCAC AGAATCAGAA AGGATCATCA GCCATATCTG GACATGGCAT GCTTACATAT
TACTTTTTGA GATGTGCTTG ATGCCAAATA TTTTAATGCT ATATTTTCTT ACGTGATTGT TAGAATCAAC AGATATGCAG
AAGGTAGAAC TGCCCTTTCT GTAAAAAATG TGAAGTGGCT GGTTCTTACT TTCTCAATGA ATCCAATGAC TTGTTTTTAT
GTTTATTTTC TTTTTTGTGT GTTAAATTTT GCATATACAT TTTCTTTATA AGCCCACTCT GTAACAAAAC TCCGTACCTC
TGTCAAATAT GAACACAATT ATGTAATGTT CCCTTTCTAC ACTATTTTGA AAGATTTGAT ATTCTTTTCT TCTTGCTAGG
TCTCACTTGA TGCAGCAAAA GTTATAAATG TAACTCCTAG ATATGCCCGT TTACGGGCAG GTGCAAATGG CTCTGCAAAA
GGAGAAATTA TTGGGTGGGA GAACATAGAA CTTATCAGTG ATAGGCCACT TGAAACCATG TTGAAAGAAT TCAAGCAATT
GAAAGAAGAG TATCCAGACA GAATTCTGAT TGCTTCAATC ATGGAGGAGT ACAATAAGGC TGCTTGGGAG GAGCTTATCG
ATCGAGTCGA GCAAACTGGA GTTGTAAGAT GTGTTTCATG ACTGAGTTTG TGACACTTGA TGTTTTTCCA ACTTGAAATG
TCTGGTGGCT GACCTCTCTG ATATTGCTGC TATAGGATGC AATCGAAATA AATTTCTCAT GTCCTCACGG TATGCCAGAA
CGCAAAATGG GTGCTGCTGT TGGCCAAGAT TGTGCTCTTC TGGAAGAGGT TTGTGGATGG ATAAATGCTA AAGCCACAAT
TCCTGTTTGG GCTAAGATGA CTCCCAATAT AACTGATATT TCACAGGTTG GCTTTGGATC TTGTCCTTTT GTTATATGTA
TACTCTTAAC TATAATACTA TATTCTCATG TTTAAGTGAA AACCTGAATA CCTATCAAAT TTGTGAATTA CCATTGAAAT
TTTGTATTGT TTGTTTTTCT TGATGTTCTA ATACTTCATG ATACTTTACT GATACTTATC AATGAAGTAT CTCTAATCTA
TAGAGCAGTA ATACTTTATG ATGACGATAA TTTATAATTT TTTTTGTTAA CATTTATTAC ATTTCATTTT AGTTTGTATT
CCCAATAACA ATCATATATT TATAAGTTTT TAAGAATTTT GTATATTTTT CAATATGCAT ATATCATGTG TCGTATCTTA
TTATTTTCAC AATAAGTGTA TGGATGTATC GGATACTAGT CTTATCCGTG TATCATATTG GAATAATAGA TCCATTGCAC
CATGCACTAT GCACATTATA GCCATGACTA CCATGCTAAT AATTTTGGGG TTGATTTTTC TTATAGCCAG CAAGGGTTTC
TCTAAGTTCA GGATGTGAGG GAGTATCTGC CATAAATACA ATCATGAGTG TCATGGGAAT CAATCTCAAT ACATTACGTC
CAGAGCCTTG TGTTGAGGGG TTTGCAATCT CACTTACCAC AAATTCATAG TTTTGCCTTG GTTTTTCAAC CATCTCATGG
ACCTAATCTG TCTAAATTTC GCTGTTAGGT ACTCAACTCC TGGGGGGTAT TCTGCAAAGG CAGTCCATCC CATAGCACTT
GGGAAGGTGA TGACAATTGC AAAGATGATG AAGTCAGAGT TTGACAGTGA GAACTATTCA CTTTCTGCCA TTGGTGGTGT
TGAGACAGGC GGAGATGCAG CTGAATTTAT TCTTCTTGGG GCAAACACTG TTCAGGTACA ATCAACAAAC ACTGTTTTAG
GTCTAGTGGC AAACACTCAC AATAGGTTTC TCCTTGTTTA GTGGAAAACA CGAGTTCCAA ATAAGTTCAT GTTAAACATC
GTTGTCATTA CATTAAGATT TTATGAAAAA AAAAGGAAAA AATAACATGA GAGGACCACG CAAACACATG ATAAAATTAC
ATCGCACATG TAGGCAAAAA CAAATATCTA TCATGAAAAA AACCCATGAT TTCCTTCAGG AGAATCATTC CATACTTTGA
TCTCAATATA CCAGGAAAAA GACAAATCCA AGCACACTAT ATAGATGTTT TCTTTTATGT GGATTAATTT AAATACATTA
ACAATGTAAA AGTTGTTTAC ATTATCATCC AATTATAGAT TACCATGTAT TCTCTTCATT TAATTGTAGG TGTGCACTGG
GGTTATGATG CATGGCTATG GTCTTGTGAA GAAACTATGT CTTGAGCTTA AAGACTTCAT GAAAAAGCAC AATTTCACAA
CAATAGAAAA CTTCAGAGGG TACAGTTTTG ATCTGATATG GTTTCCCTCT TCCAATATCC TAAAAAACAG AAAAAAAAAT
GCATGTTTGA CTTTTTACCA TGAAAAATGC ATATTCTAAT TTTATTTAAA ATCACAGGGT TTCTCTTGAG TACTTTACTA
CTCACACTGA GTTGGTGAGA AGGCAGCAAG AAGCAATTCA GAAGAGGAAA GCCATAAAGA AAGGCTTGCA ATCTGACAAA
GACTGGACTG GAGATGGTTT TGTGAACGAA AGTGAAAGTA TGGTATCTAA CTGAAATCTT CAGCCAAATC AAGCATCATG
CAACCTTTCT TTTACAATTT TTCATTATCA TGCAAATGAG GAGGTGAAGC ACATTATCCT TTGTTATTAA TCATGGATAT
TTATCTTTCC AAGAACATTA GAATGTATTA TGTCAGAAAA TAAAGGAAGT ATTTTTAACA AAATTCTGGG AAGATTATCA
TAAACCTTTA CTTGGGTCAG CATTCTCTTG CCAACATACA TTATCTTTAT GTTACTTTGG TATACTCTAA TAGAATGAAG
TGCTAAAAAA TAGCTGTCCA CTTTTAATAT TGACTGTGAC ATGAGAAAAT ATAATCTGGC T

>Vigan.11G222200.01
GTAACTTTTT CCCATGCAGA AAGAATATCC ATCCATGTTC CTTCCCCACA AAATCAATGA ATCCAAACTA CAGTGTTATT
AGTTTTATGC AATATATAAT ATTTTGCTAA CAAAATTTTC CCCCAAAATC CTTATAATAT TCTTTCACAG TCATTCTCAC
ATGTTAGTCC AATTCTATGA AGGAATTGAA TATGGTTTCT CCCAAACTTA TCCGATACAA TAAACCAAAT GCTAGAAACG
AAACAAGAGA TTCATAATTG CACGTTCTCT TTTGTTGTCT CCAGCTCATA GAATATCATA TCAGATTCAG AATTTCAGAT
TCTCCCTTTA TTCTTCCTAT TCATCACCTT CTCCTTCCCC GAGCTGCTGT AGAAAGTTGT GATTTTTACT TTACAGATGG
CATCTTTGAG CATGACCCAG ATCAGAGCTG GGAATTGGGC ATCTGGGTTT GGCTTGAATC GGGCTGGGAA GGTTCAGGTT
GGTCCCAGCA GCAGAGTTGG ATTTAAGGTG TTTGCTTCAG AGACTCAGGC TACAGAGCCT GATCTTAGCG TCACTGTCAA
TGGGTTGCAC ATGCCCAACC CCTTTGTTAT TGGGTCAGGT CCTCCAGGAA CCAATTACAC TGTCATGAAG AGGGCCTTTG
ATGAAGGTTG GGGTGCTGTG ATTGCCAAAA CTGTCTCACT TGATGCAGCA AAAGTTATAA ATGTAACTCC TAGATATGCC
CGTTTACGGG CAGGTGCAAA TGGCTCTGCA AAAGGAGAAA TTATTGGGTG GGAGAACATA GAACTTATCA GTGATAGGCC
ACTTGAAACC ATGTTGAAAG AATTCAAGCA ATTGAAAGAA GAGTATCCAG ACAGAATTCT GATTGCTTCA ATCATGGAGG
AGTACAATAA GGCTGCTTGG GAGGAGCTTA TCGATCGAGT CGAGCAAACT GGAGTTGATG CAATCGAAAT AAATTTCTCA
TGTCCTCACG GTATGCCAGA ACGCAAAATG GGTGCTGCTG TTGGCCAAGA TTGTGCTCTT CTGGAAGAGG TTTGTGGATG
GATAAATGCT AAAGCCACAA TTCCTGTTTG GGCTAAGATG ACTCCCAATA TAACTGATAT TTCACAGCCA GCAAGGGTTT
CTCTAAGTTC AGGATGTGAG GGAGTATCTG CCATAAATAC AATCATGAGT GTCATGGGAA TCAATCTCAA TACATTACGT
CCAGAGCCTT GTGTTGAGGG GTACTCAACT CCTGGGGGGT ATTCTGCAAA GGCAGTCCAT CCCATAGCAC TTGGGAAGGT
GATGACAATT GCAAAGATGA TGAAGTCAGA GTTTGACAGT GAGAACTATT CACTTTCTGC CATTGGTGGT GTTGAGACAG
GCGGAGATGC AGCTGAATTT ATTCTTCTTG GGGCAAACAC TGTTCAGGTG TGCACTGGGG TTATGATGCA TGGCTATGGT
CTTGTGAAGA AACTATGTCT TGAGCTTAAA GACTTCATGA AAAAGCACAA TTTCACAACA ATAGAAAACT TCAGAGGGGT
TTCTCTTGAG TACTTTACTA CTCACACTGA GTTGGTGAGA AGGCAGCAAG AAGCAATTCA GAAGAGGAAA GCCATAAAGA
AAGGCTTGCA ATCTGACAAA GACTGGACTG GAGATGGTTT TGTGAACGAA AGTGAAAGTA TGGTATCTAA CTGAAATCTT
CAGCCAAATC AAGCATCATG CAACCTTTCT TTTACAATTT TTCATTATCA TGCAAATGAG GAGGTGAAGC ACATTATCCT
TTGTTATTAA TCATGGATAT TTATCTTTCC AAGAACATTA GAATGTATTA TGTCAGAAAA TAAAGGAAGT ATTTTTAACA
AAATTCTGGG AAGATTATCA TAAACCTTTA CTTGGGTCAG CATTCTCTTG CCAACATACA TTATCTTTAT GTTACTTTGG
TATACTCTAA TAGAATGAAG TGCTAAAAAA TAGCTGTCCA CTTTTAATAT TGACTGTGAC ATGAGAAAAT ATAATCTGGC
T

>Vigan.11G222200.01
ATGGCATCTT TGAGCATGAC CCAGATCAGA GCTGGGAATT GGGCATCTGG GTTTGGCTTG AATCGGGCTG GGAAGGTTCA
GGTTGGTCCC AGCAGCAGAG TTGGATTTAA GGTGTTTGCT TCAGAGACTC AGGCTACAGA GCCTGATCTT AGCGTCACTG
TCAATGGGTT GCACATGCCC AACCCCTTTG TTATTGGGTC AGGTCCTCCA GGAACCAATT ACACTGTCAT GAAGAGGGCC
TTTGATGAAG GTTGGGGTGC TGTGATTGCC AAAACTGTCT CACTTGATGC AGCAAAAGTT ATAAATGTAA CTCCTAGATA
TGCCCGTTTA CGGGCAGGTG CAAATGGCTC TGCAAAAGGA GAAATTATTG GGTGGGAGAA CATAGAACTT ATCAGTGATA
GGCCACTTGA AACCATGTTG AAAGAATTCA AGCAATTGAA AGAAGAGTAT CCAGACAGAA TTCTGATTGC TTCAATCATG
GAGGAGTACA ATAAGGCTGC TTGGGAGGAG CTTATCGATC GAGTCGAGCA AACTGGAGTT GATGCAATCG AAATAAATTT
CTCATGTCCT CACGGTATGC CAGAACGCAA AATGGGTGCT GCTGTTGGCC AAGATTGTGC TCTTCTGGAA GAGGTTTGTG
GATGGATAAA TGCTAAAGCC ACAATTCCTG TTTGGGCTAA GATGACTCCC AATATAACTG ATATTTCACA GCCAGCAAGG
GTTTCTCTAA GTTCAGGATG TGAGGGAGTA TCTGCCATAA ATACAATCAT GAGTGTCATG GGAATCAATC TCAATACATT
ACGTCCAGAG CCTTGTGTTG AGGGGTACTC AACTCCTGGG GGGTATTCTG CAAAGGCAGT CCATCCCATA GCACTTGGGA
AGGTGATGAC AATTGCAAAG ATGATGAAGT CAGAGTTTGA CAGTGAGAAC TATTCACTTT CTGCCATTGG TGGTGTTGAG
ACAGGCGGAG ATGCAGCTGA ATTTATTCTT CTTGGGGCAA ACACTGTTCA GGTGTGCACT GGGGTTATGA TGCATGGCTA
TGGTCTTGTG AAGAAACTAT GTCTTGAGCT TAAAGACTTC ATGAAAAAGC ACAATTTCAC AACAATAGAA AACTTCAGAG
GGGTTTCTCT TGAGTACTTT ACTACTCACA CTGAGTTGGT GAGAAGGCAG CAAGAAGCAA TTCAGAAGAG GAAAGCCATA
AAGAAAGGCT TGCAATCTGA CAAAGACTGG ACTGGAGATG GTTTTGTGAA CGAAAGTGAA AGTATGGTAT CTAACTGA

>Vigan.11G222200.01
MASLSMTQIR AGNWASGFGL NRAGKVQVGP SSRVGFKVFA SETQATEPDL SVTVNGLHMP NPFVIGSGPP GTNYTVMKRA
FDEGWGAVIA KTVSLDAAKV INVTPRYARL RAGANGSAKG EIIGWENIEL ISDRPLETML KEFKQLKEEY PDRILIASIM
EEYNKAAWEE LIDRVEQTGV DAIEINFSCP HGMPERKMGA AVGQDCALLE EVCGWINAKA TIPVWAKMTP NITDISQPAR
VSLSSGCEGV SAINTIMSVM GINLNTLRPE PCVEGYSTPG GYSAKAVHPI ALGKVMTIAK MMKSEFDSEN YSLSAIGGVE
TGGDAAEFIL LGANTVQVCT GVMMHGYGLV KKLCLELKDF MKKHNFTTIE NFRGVSLEYF TTHTELVRRQ QEAIQKRKAI
KKGLQSDKDW TGDGFVNESE SMVSN*