GBrowse Details

Vigan.11G199700.01

Basic Information:
Name: Vigan.11G199700.01
Multiple alignment
Variant Information
Position: Chr11:32510708..32515644 (+ strand)
Length: 4937
Functional Information:
Description: Similar to uncharacterized protein. [D7L8U4, Arabidopsis lyrata subsp. lyrata]
InterPro: Domain of unknown function DUF89 (IPR002791)
Uncharacterised conserved protein UCP030210 (IPR016949)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.10,19.91,28.26,28.96,14.73,11.72,14.50,26.32
Arabidopsis thaliana homolog: AT2G17320.1, AT2G17340.1, AT4G35360.1
Automatic updates:
Name: NM_001255359 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100804454 (LOC100804454), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:32510708..32510919 (+ strand)
Length: 212
Type: five_prime_UTR
Position: Chr11:32510920..32511089 (+ strand)
Length: 170
Type: CDS
Position: Chr11:32512214..32512279 (+ strand)
Length: 66
Type: CDS
Position: Chr11:32512364..32512430 (+ strand)
Length: 67
Type: CDS
Position: Chr11:32512565..32512633 (+ strand)
Length: 69
Type: CDS
Position: Chr11:32512959..32513099 (+ strand)
Length: 141
Type: CDS
Position: Chr11:32513679..32513807 (+ strand)
Length: 129
Type: CDS
Position: Chr11:32513924..32514010 (+ strand)
Length: 87
Type: CDS
Position: Chr11:32514551..32514625 (+ strand)
Length: 75
Type: CDS
Position: Chr11:32514709..32514786 (+ strand)
Length: 78
Type: CDS
Position: Chr11:32514903..32514980 (+ strand)
Length: 78
Type: CDS
Position: Chr11:32515089..32515151 (+ strand)
Length: 63
Type: CDS
Position: Chr11:32515242..32515322 (+ strand)
Length: 81
Type: CDS
Position: Chr11:32515323..32515644 (+ strand)
Length: 322
Type: three_prime_UTR

>Vigan.11G199700.01 class=Sequence position=Chr11:32510708..32515644 (+ strand)
CAGAAAAGGA AAAGAAGTTG AGAGTTTCAA CTCGTGTTGT GGGAAGTGAA AGTGAGGAGA GAAGCGCCAC TCCGTCACGC
TTTCTCTCTC ATCTCTCTCT CTCTGTCTCT CTCACTGCAA TTCCTGTTGC CGAATTGAAC TCACAACGCA ACTCGGATCT
TATCACTATT TATTGATTTT GCAATCACAT TCATTCCTTC TTGCTGTGAA AAATGGAAAG CGCGTCAGAG CTTGTGGAAT
TTCCATTGTT GTTGACACCA ATCGATTCCC ACTACAGAGC ATGCACCATT CCCTACAGAT TCCCCTCCGA TAACCCCCGC
AAGCCCACTC CCACCGAAAT CTCTTGGATT GATCTCTTCC TCAACTCCAT CCCCTCTTTC AAGTGCGTTC TCCTCTCCTC
TTCTTTTCAC TAAAAAAGAT TTTTTTTTCT TACCCGATTC GTAGTTTTTC ATCGCTTTCA CCATACCCTT TTGCTCGTTC
TGCCCGACGA TGCCTTGTTT TTGTTAAAAA TTACTTTTTT TTATCTCTCT TACAAATCGA TAACAAATAT GGGTCGTTTT
TATATTTTTT GCTTTTCTTT ACACCACTAT GATGTTTGAT TGTGTGATTT TAAAGGCAAT CAGGATTGTT TATACCGCTC
TCATAGTTAC TACTTCTATT TTTATGCTAA CTTATTTTAT TCGTTTTTTT ATGCTTTCTA AAGTGTGTCG ACCTTTTTGT
TCTTGTAGTT GGATTTGATT TTTATTTTTA TTTTTAACTA TTTTAACCAT TATACGTGTT TGTTTGTAAT GGTGGTTGGT
ATGTATGCTG GTGAAAGGTG AACAACATAT TCAGGTGGTG TCACCATTAT CATTTGTTTG TTGCTTATTG TTCAAAATAG
CAGTTAGAAC TTGTTTGTAA ATTTTTATAT ATGTGGAAGT TACTGCCAAA GTAGTTGGTA CAATTGGGAG GTCAACTATG
CTGATTATGC TTTGATACTT CTCATGGCAT TTTTTTAACT TCTTCCCATT TCCTTGGTAC TGGGTCAGGG TTAGTTTGTT
TTGGTTTCTT TAGGGACTTT AGAGGTTAGC CAAAAGTCCA AAACTTACAT CTAGAAGATG ATTTGAGTTG TCGCTAGGTA
AGTAATGGTG AAGCTTCTTT ATGAGTAGTT GAGTGTTTGG TAAACATTTT ATGTAAGCGT CATTAATTTT AACGAGAGAC
CAAAGTGTCA TGATCATAAT AAAGTCTCTA ATAAGTAATA ACAGTGGATG TTTAAGTTGT TTTAATAATA ATTTGTGAAT
TTGTTGACAA TTTTTTTATA TTTTGAATTA ACCCGAACAC ACCAAATGAC TAAGCAATTT GACTATCTCT CTTTGTCTAG
ATTTTAGGAG CCCATCTTTG TTCAATTTAC AAACTTGTCA TTGTTATTTT TTCCTAATCA GTGAGATATG TGATTTTATA
TAATTGCAAG GATTTCATTG TTTATTTGTT TCTTGTTTAC ATCATCATTT AGCTTTGGTT TGGCAGGAGG CGTGCAGAGA
GTGATGCTTC TGTTCCTGAC GCGGCTGCCA AAGCTGAAAA ATTTGCTCAA AGGTGATCTT TATATCTACT TTACATAATA
GCTTTAGGTA TAGGATTTAC TAATTTTTTA TTTTGTTTAT GCTTTCCCTG GAAAAGATAT GCTGACATAC TTGAAGATTT
GAAGAAAGAT CCTGAAAGTC ATGGTGGGCC TCCTGATTGC ATTGTATGTT CTATACTATA GCTAGAATTA TACCCTAAGC
CTCCCTCCCC CAGAAGAGGA ATTAGAAGAT AAAAGCAGCA GCTGGTGATG TTTCTAATTT CCTTCATTGT TTTTCTTTCT
GTTGGGTGAT TTTTCAGCTT CTTTGCCGAC TTCGTGAGCA AGTGCTCCGA GAATTAGGAT TCAGAGATAT ATTCAAAAAA
GTCAAGGTAA GTTTTACTGC TATTTGGGAT GCCATTAGTT TCTTCTATGC AGCTATGGAT AATAAAAGGT CGAATAAAAA
GTGTGTTCCT GTCTGATTGT TGTTGAAGAA ATTTAACATC TTGCTTGCCC TGTGGAGGAA AATTGAATGG ATTTGTTTTT
GGTTATAGTT GGTTGAAAAG CTCTATAGTT ATTAGTCGAA GTGGAGAAGA TTTAACCATA CATTATCAAT TTCAATAACG
AAGAGCTAGG GTGTTATTAT GACATTACTT ATGCACAATG TAGTTTCATT TCACCTAAGG TATGTTACTC CTTTCTGATT
GGCTGCAATA GGATGAAGAA AATGCAAAAG CCATCTCACT TTTTGAGAAT GTTGTTCAAC TTAATGATGC CATTGAAGAT
GAAGGCAAGC GACTTGAGAA TCTAGTCAGA GGAATTTTTG CTGGAAACAT ATTTGATCTT GGTTCTGCAC AGGTAGGATG
ATTTACTATG CATTCTTTGA TAACTTTGCA TAGCTAAATT TTGACTCTTC CTCAAACCAG ACTGCATCTT CCCAATTCTT
CAAATACCAA TTTTAAATCG TTAAGCTGCA ATCTCTATGG ATGTTCTTTT ATGTCCATGT TACAATACCA ACCTCTTTAC
TCATTATTCC TTCCAATTCC CTATTATTAG CTTTGGTTTA GTTTAGTTCA GTTCTTCTAT AAAGAGATAT GGTGTGGTTG
ATATCATTAA AATACAATAT TCCATAACTT TTGTTGAATT GTTGGCATTA CTAATGTCTA TCCTTATCCC ATTTTCTGAT
ATTATTTGAT TTTGTTCCTC AATGCCATGT GAAACATAAG GGCACATGAT TTGGTTAATT ATCCTAGTTA AAATACAATG
TTCCTTTATG TCTTCCCTTG GTTGCTGAAA TTTGGCATTG GTAACTAGAT ATAGTTAAAG CTTTACTCAT GTCTGAACTT
ATTTTTCTAT CACAATCATA AGCGGTAGTG TGTAGAATTA CATCTATTTG TACTTTATAT ATTAACTAAT TCTTTTCACA
ATTTCTTGAA GCTTGCAGAG GTTTTCTCTA AGGATGGAAT GTCCTTTTTG GCTAGTTGCC AAAATCTGGT TCCTCGACCA
TGGGTTATTG ATGATCTTGA CACGTTTAAA ATGAAATGGA GCAGGAAGCC ATGGAAGAAG GCAAGTTTCA TGTGTATAAA
TTCAAGAGAC ACAATTTTAT CATTAATTAT TGAAAAGTAT TTTTGTCTCC TGGCTGCCGT TGCTGAAGTT CTAATATTTG
CCCTTTATCA TGGCAGGTTG TCATATTTGT CGATAACTCT GGTGCAGATA TCATTTTAGG TATCATGCCA TTTGCAAGAG
AGCTACTTCG GCGTGGGAGT CAGGTTTGCT GACAAATTCA TTCATTCGTA GAAGAAAAAT TCACTAGGGA AATATTGTGT
AGAGATATAG GATAAGAAGC CCTTCTTAAG ATAAGAACGA AAGATAAAAA AAAACTGAAA AATGAGAAAA TCAATGGAGC
AAGAATGTCC AATCAATAAC AAGCTTACCT GATTTACAAG GCCATTTGCA CCACATAAAA CCCACATGCA TGGATTTTTT
TTTACCAGAT CATTTGTTAT GCCATTGAAA TTTCTTTAAA AAGATGAGTT ATTATCCAAC CAAATGAATT CTTACCAGAT
CATTTGTTAT CACATGGCCA CAGATATTTT GAATCTTTGC TTCTGCCAAT TTTTTCTGAT ATTTTACTTG AAAATCAATC
ATTTAAACTC TAATTTGTGG ATAAAATTTG TCAATGAATG TCTTGTTGTA GATGTTTATT GGTCCTATTC CATTTTAGTT
ATCTTTTTGA AATTGAAGCT GCTTTTCATA TGCTGTTGTT GCAGCCAGCA TAACGCATTT TACGTGATTC TCTTTGGATT
CAGGTTGTAT TGGCTGCTAA TGAGTTACCA TCTATCAATG ATGTCACTTG TTCTGAGCTA GTTGAAATTA TATCAAAGGT
AACGAAAATA AATATGCTTA AGTTTTTGAA ATGGCCATAT TCCTCACTAA CTCCTTTCAT TTTTGGTTTC CACTTATCCA
GTTGAAGGAT GAACAAGAAC AACTTGTGGG TGTCAGTACT TCAAATCTTT TAATTGCTAA CTCTGGCAAC GATTTACCTG
TAAGTAAATG AGCAATGATT TTTTCTATTT AGCAAAAGTT ATGGTATTTT AACTTACGAT CATTAATCCG ACGCGGTGAT
CAAATCTTTC TTGCTTTTGT TGAAATGGAT TACAGGTTAT TGATCTTACA AGAGTGTCAC AGGAGCTTGC TTACCTTGCC
AGTGATGCAG ATCTTGTCAT ATTAGAAGGG ATGGTAAGTT CTTCCTCTGA TATTGTTTGA AACTTGTACT TGGACTCTGC
CATTGCATCT GGTTTATCAA ATTCATATGT TAAACAAATG CTAATCTAGT TCTTTTGCCA GGGACGTGGA ATAGAAACAA
ATCTGTATGC TCAGTTCAAA TGTGATTCCC TGAAGATTGG AATGGTAATG CACCTTACCA TCATCTTTAC CTTCAATAAT
GAAAATTTGA GCTTCTAATG ATTCCTTATT TCTTTATTGG CATAATTTTC TTAGGTAAAA CATCCTGAGG TTGCACAATT
TCTTGGTGGA CGTTTATATG ACTGCGTGTT CAAATACAAT GAAGTTTCAT CTTAACAAGC CTTATTCTTT TCTCTACTAA
TGCTGCACAA CCTGCATATT TTCTACTGTT AATCCTTCAT CTTGGTGCAA CCATTGATAT GCCTTTAGTT TCGTACTTTT
CAGAACGTCA ATTCAGTGTT ATAAAGGTGA TATGACCGAA CCATTTTACT TGTAATAAAA AACGATTCTA CATACATGCA
GTTAGAAAAA TGTTAACAGC ATACTATTTC TTATCAGTTG AAATTCTTGT TTAAGTAACA AAGTCAGATT TGTTTCTTGT
AACCAAGATC CTGAATTTTA ACTACAGCAC AAGTGTATCA TTTCTTTCTA AGGAAAA

>Vigan.11G199700.01
CAGAAAAGGA AAAGAAGTTG AGAGTTTCAA CTCGTGTTGT GGGAAGTGAA AGTGAGGAGA GAAGCGCCAC TCCGTCACGC
TTTCTCTCTC ATCTCTCTCT CTCTGTCTCT CTCACTGCAA TTCCTGTTGC CGAATTGAAC TCACAACGCA ACTCGGATCT
TATCACTATT TATTGATTTT GCAATCACAT TCATTCCTTC TTGCTGTGAA AAATGGAAAG CGCGTCAGAG CTTGTGGAAT
TTCCATTGTT GTTGACACCA ATCGATTCCC ACTACAGAGC ATGCACCATT CCCTACAGAT TCCCCTCCGA TAACCCCCGC
AAGCCCACTC CCACCGAAAT CTCTTGGATT GATCTCTTCC TCAACTCCAT CCCCTCTTTC AAGAGGCGTG CAGAGAGTGA
TGCTTCTGTT CCTGACGCGG CTGCCAAAGC TGAAAAATTT GCTCAAAGAT ATGCTGACAT ACTTGAAGAT TTGAAGAAAG
ATCCTGAAAG TCATGGTGGG CCTCCTGATT GCATTCTTCT TTGCCGACTT CGTGAGCAAG TGCTCCGAGA ATTAGGATTC
AGAGATATAT TCAAAAAAGT CAAGGATGAA GAAAATGCAA AAGCCATCTC ACTTTTTGAG AATGTTGTTC AACTTAATGA
TGCCATTGAA GATGAAGGCA AGCGACTTGA GAATCTAGTC AGAGGAATTT TTGCTGGAAA CATATTTGAT CTTGGTTCTG
CACAGCTTGC AGAGGTTTTC TCTAAGGATG GAATGTCCTT TTTGGCTAGT TGCCAAAATC TGGTTCCTCG ACCATGGGTT
ATTGATGATC TTGACACGTT TAAAATGAAA TGGAGCAGGA AGCCATGGAA GAAGGTTGTC ATATTTGTCG ATAACTCTGG
TGCAGATATC ATTTTAGGTA TCATGCCATT TGCAAGAGAG CTACTTCGGC GTGGGAGTCA GGTTGTATTG GCTGCTAATG
AGTTACCATC TATCAATGAT GTCACTTGTT CTGAGCTAGT TGAAATTATA TCAAAGTTGA AGGATGAACA AGAACAACTT
GTGGGTGTCA GTACTTCAAA TCTTTTAATT GCTAACTCTG GCAACGATTT ACCTGTTATT GATCTTACAA GAGTGTCACA
GGAGCTTGCT TACCTTGCCA GTGATGCAGA TCTTGTCATA TTAGAAGGGA TGGGACGTGG AATAGAAACA AATCTGTATG
CTCAGTTCAA ATGTGATTCC CTGAAGATTG GAATGGTAAA ACATCCTGAG GTTGCACAAT TTCTTGGTGG ACGTTTATAT
GACTGCGTGT TCAAATACAA TGAAGTTTCA TCTTAACAAG CCTTATTCTT TTCTCTACTA ATGCTGCACA ACCTGCATAT
TTTCTACTGT TAATCCTTCA TCTTGGTGCA ACCATTGATA TGCCTTTAGT TTCGTACTTT TCAGAACGTC AATTCAGTGT
TATAAAGGTG ATATGACCGA ACCATTTTAC TTGTAATAAA AAACGATTCT ACATACATGC AGTTAGAAAA ATGTTAACAG
CATACTATTT CTTATCAGTT GAAATTCTTG TTTAAGTAAC AAAGTCAGAT TTGTTTCTTG TAACCAAGAT CCTGAATTTT
AACTACAGCA CAAGTGTATC ATTTCTTTCT AAGGAAAA

>Vigan.11G199700.01
ATGGAAAGCG CGTCAGAGCT TGTGGAATTT CCATTGTTGT TGACACCAAT CGATTCCCAC TACAGAGCAT GCACCATTCC
CTACAGATTC CCCTCCGATA ACCCCCGCAA GCCCACTCCC ACCGAAATCT CTTGGATTGA TCTCTTCCTC AACTCCATCC
CCTCTTTCAA GAGGCGTGCA GAGAGTGATG CTTCTGTTCC TGACGCGGCT GCCAAAGCTG AAAAATTTGC TCAAAGATAT
GCTGACATAC TTGAAGATTT GAAGAAAGAT CCTGAAAGTC ATGGTGGGCC TCCTGATTGC ATTCTTCTTT GCCGACTTCG
TGAGCAAGTG CTCCGAGAAT TAGGATTCAG AGATATATTC AAAAAAGTCA AGGATGAAGA AAATGCAAAA GCCATCTCAC
TTTTTGAGAA TGTTGTTCAA CTTAATGATG CCATTGAAGA TGAAGGCAAG CGACTTGAGA ATCTAGTCAG AGGAATTTTT
GCTGGAAACA TATTTGATCT TGGTTCTGCA CAGCTTGCAG AGGTTTTCTC TAAGGATGGA ATGTCCTTTT TGGCTAGTTG
CCAAAATCTG GTTCCTCGAC CATGGGTTAT TGATGATCTT GACACGTTTA AAATGAAATG GAGCAGGAAG CCATGGAAGA
AGGTTGTCAT ATTTGTCGAT AACTCTGGTG CAGATATCAT TTTAGGTATC ATGCCATTTG CAAGAGAGCT ACTTCGGCGT
GGGAGTCAGG TTGTATTGGC TGCTAATGAG TTACCATCTA TCAATGATGT CACTTGTTCT GAGCTAGTTG AAATTATATC
AAAGTTGAAG GATGAACAAG AACAACTTGT GGGTGTCAGT ACTTCAAATC TTTTAATTGC TAACTCTGGC AACGATTTAC
CTGTTATTGA TCTTACAAGA GTGTCACAGG AGCTTGCTTA CCTTGCCAGT GATGCAGATC TTGTCATATT AGAAGGGATG
GGACGTGGAA TAGAAACAAA TCTGTATGCT CAGTTCAAAT GTGATTCCCT GAAGATTGGA ATGGTAAAAC ATCCTGAGGT
TGCACAATTT CTTGGTGGAC GTTTATATGA CTGCGTGTTC AAATACAATG AAGTTTCATC TTAA

>Vigan.11G199700.01
MESASELVEF PLLLTPIDSH YRACTIPYRF PSDNPRKPTP TEISWIDLFL NSIPSFKRRA ESDASVPDAA AKAEKFAQRY
ADILEDLKKD PESHGGPPDC ILLCRLREQV LRELGFRDIF KKVKDEENAK AISLFENVVQ LNDAIEDEGK RLENLVRGIF
AGNIFDLGSA QLAEVFSKDG MSFLASCQNL VPRPWVIDDL DTFKMKWSRK PWKKVVIFVD NSGADIILGI MPFARELLRR
GSQVVLAANE LPSINDVTCS ELVEIISKLK DEQEQLVGVS TSNLLIANSG NDLPVIDLTR VSQELAYLAS DADLVILEGM
GRGIETNLYA QFKCDSLKIG MVKHPEVAQF LGGRLYDCVF KYNEVSS*