GBrowse Details

Vigan.11G195000.01

Basic Information:
Name: Vigan.11G195000.01
Multiple alignment
Variant Information
Position: Chr11:31952664..31960117 (- strand)
Length: 7454
Functional Information:
Description: Similar to Uncharacterized protein. [K7LE10, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.00,4.30,6.32,0.00,0.11,0.03,0.37
Automatic updates:
Name: NM_001255011 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MADS-box transcription factor 6-like (LOC100779279), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:31952664..31952796 (- strand)
Length: 133
Type: three_prime_UTR
Position: Chr11:31952797..31952896 (- strand)
Length: 100
Type: CDS
Position: Chr11:31953674..31953777 (- strand)
Length: 104
Type: CDS
Position: Chr11:31953890..31953931 (- strand)
Length: 42
Type: CDS
Position: Chr11:31954472..31954513 (- strand)
Length: 42
Type: CDS
Position: Chr11:31954887..31954986 (- strand)
Length: 100
Type: CDS
Position: Chr11:31955319..31955380 (- strand)
Length: 62
Type: CDS
Position: Chr11:31958168..31958249 (- strand)
Length: 82
Type: CDS
Position: Chr11:31959321..31959502 (- strand)
Length: 182
Type: CDS
Position: Chr11:31959503..31960117 (- strand)
Length: 615
Type: five_prime_UTR

>Vigan.11G195000.01 class=Sequence position=Chr11:31952664..31960117 (- strand)
TTGGAAGTGA CGGGTAAAGT GTTCCGCACT TGACCAGAGA GTATTCTTTG TATTCCTTCT AATATATGTC TTATAAAATA
ATTAAGATCT TGACTTTCTC ACTATCTTAA TGCTCATTAA AAATTGTTAC ATCTTATTTT CTTTTTTATT TTATGAATCA
CATCCATTCC TTCTGTTGAA ACAGTTTTGC TCCAATCAAA TAAACTTACT ATAAAGTTTT TGAGGCATTT ATTATAAGAT
TACATGGTTA AGGTGAAAGA GTTTTATGTG ATTGGTTTAA ACAGAGTGAG TGGTTCTCGT TTTCAACTTT TTGTTTACGC
TTTACACGAA TGCATTTGAA CTTGAAAAGC AATAATGGTA ATTAGTAGTA GTTGGTAAAT CACGAAAACT TTAACTTCAC
GATGAGTTCT TGACCTGATA TTGCGGGGAA AAGCGTGGTC ATTAGTTTGG AGATAGAAGT AGAATATGGA ATCTTGATCG
TATTATCTTC GCTGTCCCTT ATGCATGTGC TTATCTATAA CCCCTTCTGC AGTTGAATAT ATAAGTAAAA CAAACTGCAA
TTTACAACCA TATACTTAAT ATTTTACTGT GAGAGAGAGA GAGAAAAAAA AAAGCATGGG AAGAGGAAGG GTTGTTCTTG
AGAGAATAGA GAACAAGATC AACCGTCAAG TAACGTTCTC AAAGCGCAGA AGTGGGTTGC TGAAGAAGGC CTTTGAGCTT
TCTGTGCTCT GTGATGCAGA AGTTGCCCTT ATCGTCTTTT CTAGCCGTGG GAAGCTTTTT CAGTATAGCA GCACTGAGTA
ATTTCTTTCT CTCTCTCTCT CTTCTGCTTT CTTAATTGAT TCTGCCATCA GATGTTGCTG TTGTACATGC ATTAGGGCAT
GGAGTGATGC AAATTTATGT GTCAAGATTT AGACATCATA TTGTTATGTA GAATAATACT AATCTGTTGG TTTCACATCG
ATCGGGAAGT AAATACAAAA TTTTGTAAGA TTAAGTTAGA TTTATATTAC ACCTCTTAAT ATTATCTTTT AAGATACTCT
TTGTAATACA ACCTTAAAAA CTACAAGATC AGAAGAAGAA TCACAAACTA AGAAATTAAC CTCTCATAAA TTTATAACTT
TTCACAACTT TCAGCTTTTA GTGGAGTTTT TTTTCAATGT TCTGTTAACC TTTCATTTCA ACTTATTACT TTATAAACTA
ATTACTACAA TTAAGTTCGA CTTATAATGG AAATAGTTGA TCTTTTCATG CCACTAATAA TTTTCTGTCG ATCAGATCTT
GTTTGTTGAA TTCATATTCT TCCTGCAACT GTATTTAATG ATTACATAGT CATATTCTGT GGTGTGTGGT TATCATGGTG
AGTGCTATGA ATGATGCAAG CATGATTATA TATCATTTAG TAACCCCAAG CTAATCACTG ATTTGAGCTT TAATAACTAC
TCTTGTTCTT TATAATGAGC TTAATGATTG TCAATTTTTG TTTTGTCATA TGACCCTCAA AAGTTGTATA CAACTCAAAA
GAAAAGATAA AAAGACAGGG TCCAACGTTT TGATGCTTTG TTTTAAGTTC CTCGGATATA TCTAGTATCA TGCTTCGCAC
AAATGCAATC ATAAGCATAC CATATTCTTT ATGTTAGGGG TCTCTATCGA ATATTCAAAA TTTTACTGAT GACAGTGTCC
TAATATAACC GTTGCATGAA ACCCTAGAAT TGCTGTCTAC TTAGTAAAAC ATTTGAAGTA GGTGAACTTT ACCATTAATC
GTATTCTAAT AGTGTTTGTT CGTGTACACT ATATCTCCTT TCTCTATCAA GCATTACTGA AATTAACCGA TTAATAATGA
CATTTATTAT AATTATTATT ATGATCAGTA TTAATAAAAT CGTTGAGAGG TATCGCCAAT GTCGTTACAG CAAGTTACAG
ACGGGTGATT CATCGGAACT CGAATCACAG GTTTATTCTT CTCTTTTCTA TGTATCAAAT TCTTTTAAAT TTTCTTTTCT
TATCTTATCT CGTTATATAA CAGTGTTCTA ATTTTTTTTA TTTTAAACGA GAATATTTTA ATTATCTTTT TCATTACTCT
TTATTACAAT GTTTTTATTA ATTAGTTTAG TTCGTTAGTA ATAAATATTA TGAATTGTCT CTTTTTATTC TTTTTTTTTA
AAGAAAAGTA GAGAGTTTAT ATTTGAAAGA AACAGAAGTA TCATATTACC ATAGTTTATA AAATAAATTA AGGAAAAATC
TTGAAAAATA TATATATAGT AGTCTTGGAA ATCAAATTTA AATCCAGAAT TAATTATTTG TAGGAAATAT ATTCATTGAA
CAAACAAAAT TAATATAATT TTTCAAAAAT TTATTCTATC TCTTAAATCA AACAAAATAT ATATACAAAC TTATAACAAT
TAAAAAATAT AAAAATATTT ATTTGAGTCA GATGAAATTT GACTTTACTC TATATATTTT TATTTATAAT AGAAAAGTAA
ACATACGTAC TTCTTTTCTT AAAAAAAATA TTTGTTCATT GATATTTTTA ATTATTTTAA TAAATATTTA TATATATAAT
TTCAATTATC AAATAAAATC AGAGATAATT AAGCATTTTT AAAATTTATT TAAATAAAAA TGCTAATTAT TAAGTAAGTC
TGAGACTCAT GATAATAATA AATTATTTTT AAATATATGA ATAAAAATGT TAATTAACAA ACAAGTTTAA AACTTGATAA
TCAATAATTT TAAATATTAT ATAAATAAAA AAATTAATCA TAAAATAAAA CAATGACTTT ATATCATAAT TAATAATTTT
TAAAATTAGT ATATGAATAG AAATGATAAT ATCGAGAAGT TCAAAATTTA TTATGATAAT TAATAGTTTT TAAAACTATA
TATTTTATTT TTAGGTACAA AATTTGATTA AAACTATTAA ATATTTTAAA ATTTTAAGAC AAAAATAAGA AGGTAAAGGC
AATGCTCATA CGAATTTCTG TTGTATTAAA ACTAATAAAA ATAGATAAAA AAAAGTAGTG CATCCAGTAA TGTACTTTTA
TGCAATTATT ACAAGAAAAT ATATTTAATG AAATTTTTTA CTCCATCAAA ACTAAAAAAT AAAATTCTTC AATACATATT
TATTATAGGA TAGGGAACAA TGTCAGTTAA AAAGAAATGT ATTGGAATGG ATTTGTTATT AGTCACTTTC AATATCAAGT
TAGCGCTAAT ATAAAACAAT ATTAACACGA GTGTACAATT TCGGCTCAAT ATTTTTTCTT TTCATCTCAT TCTTATAAGA
AAACAATTAA ATTTTTTATT TTTATTTAGT TTAATTTAAT CGTTTAGTTT TTCAAAATAA TCTAATTATA CCTTTTTTTA
TTATTAGATT TACATTAAAA TTTATATATT AAATCATTGA CAAGCTTGTA TATTTAAATT AATTTTATTT TCTAAATGAA
ATAATTTAAT GTATAAATTC TAACAAAAAT TTAACGTCAA TTTAAGAAAA ATTATATAAT TAAATATTTT TAAAATTAAA
AATTTAAATT GAATCAATAA AATTTATAGA TGTAATTAAT TTTTTTTTAT AAAAATTAGA AGAGTAAAGA GAATTTTAGC
CTAAAAGTTT TAATACACCA TCTTCCCCAA AGGATCCTCA TTGCTCTTGA ATCCTATCTA TCCAGTAATA AGTCTCATGC
ATTTGTGTAG TGTAGGAGAA AATGAAAGTT ATAAACTCTA TCCTATCAAA TAAATGTAAG ATGAGTGACA GATAAATCAT
AGGAAACAAA ACATAAATTA AAAAAAAAAT CAAAAAACTT TTCAAAATAA AATTTAACCA CAACACATAA AACTTTATCT
CTTTTGAACA TCAACTGTAA CATATATCCT TCTTTAATAA CACCTAAGGA AAATACTAAA AAAATGTAAT TAAACAAACA
TAACTCACTC AAACTCTGAC AAACCATGCA TAACAGACAC ATAGTAAACT CACTCCCCAC AGCTCCTAAG ATACCAAATA
TGACTGAGAT ACAAAAAAAT ATAACACCCC AATCTTTTGT CTTCTAAATT CTATAATTAA TACAAATTAC AAAATTTAAA
ACAAAACTTC ATTTGTATTT TATTGAAAAT CTTAATTACA AACATATTTT ATTGAAAAGA ACAAATCTAA GACTAAAATA
TTATCCCAAA AAGCTAATAT TAATCTCTCT TTTCCTTCAA TTTCCTCAAC ACATATAATA TATATTATAT ATTCTCGTAT
AAAAATGACC ATGAAACCAT TAAATAAAAA AAAAGATTGA ACTAATATAA TAAAACCAAA ACATTTAAGA AAAATAGTAA
ACTATTTTTA ATATATATTT TTTAATTATT ATAATTTTTC AAGTTCTTAA AATACATATG CTAACTAATC AACTGTCAGC
ATTAGTTTCC TTTTATTTAT TTCTTTGGAT GAGTTTTTTA TCACTAGTAT AACTTTTTCT TCTAGTGATA TGAATTCTCA
TACTTCTTTT ATTATACTGT TTTTTTTTTT TACTTTTTTA TTGATTGTAT TTTAAGAAAA AATACTCCTT TTTTAATATT
TTTCAAAATT ATTAAGAGAA ATTGGGTGTA AACACCTTCA TATATTAATT ATTTACACTT TTTTAAAACT AATATTGTAA
GTTCTTTAGG AAGATTTGCT TCATCAATAC AGTATCTTGG CATTTTTATT TTACAATCTT AGCATGCATA TATATTAATA
AGCACTGTCC CTTGCAGAGT TCATATCATG AATTCTTGAA ATTAAGAGCG AAATACGAAT CTCTTGAGCG GACACAAAGG
TATACTCTTA ATATATATGT ACAAAATAAG TGTGAAAAAA TTTGGCATAT ATTTACTTTT AATATATTTC AGTTTGCTAT
AACCCTAAAA ATAAGGGTGA AAATTTCGAA AACTTGGTGG TCTTTAGTTT TTCACCCTTA CATATTTAAC AGTATATACT
AAACAGATCT TTCTTTGAAT TAATTCTCTC TCACACTCCA AATATATTCA TAAACAAAAA TGTTCTATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATTAATGT TGTGTATATT AGTTTAAATG CTTCTTTACA CTGTTTTTTC
TGTGTTTGAA GGCATTTTCA AGGAGAAGAA CTTGAGCCTC TTAGCTTTAA AGAATTGCAG AGCCTTGAGA AACAACTAGA
TATTACACTT GCTCTAACTC GACAGCAGCA AGTAATGTCT CTATCTGATG CATGCATGAT CATATATATT TTCAAAACCT
TAAAATCATC TACAATGTTT TCTTGTATTC AAATTTTTAT GTTTTGTTCC ACTATTAAAG AATGAGTGAG TTATTTTTTG
TTTTTCATTT GTGTTTCTAT TTATTTAGTT TTTACTTTAG CGTCTAACAC GGGATTCTTT ATTAAATAAA CTTGATATTA
CTTAATAGGC CTTAAAAACA ATTATGTCAG GAACCAGCAT TAATAAAAAT TAATATATAT TAAAGACACA GACAGAAAAA
AAAAATAGAA GATCAAAATG AAACAAAAAA AAAAACATTT CTTTTTTGTT GATTATTATC GTCGGGTGTG TCTTTAAATT
GCAGACAAAG AAGCTCATGG CACGAGCTGA TGAATTACGC GAAAAGGTAT GCATTTTAAC TTAAACTACT AACTAAATGA
GGCTATGTTG TTGCTCAAAT TATGTTATTA TATCAATAAA AAAAGACTTG CTAAGTGGAT TAAAAAATAT TTTTCACTTA
TTTGTTCTTA TCTTTATAAC AGTAACGTTT ACACTATTAA TTAATTAATT AATATGCAGT TACCTTTTCA AAAACAACTA
AGTGCATTTT TTCTCTCTTA ATATTATGGC AAAAAAAAAA ACAGTTATTT AATCTATGTG TTAACTTTTG TTAACGGGAC
ATGTAATTTA TGTTACTATT TATCTTAACT TTTTTTATAA AACAGAATGT TAACATTTTA TTTTGGAAGA ATTATTTAGA
AATTTAAACT GAATACGGAC TTGTATTTTT TTTTTGTTTA TTCTTTCAAT AATGGCATAT TAAAAATAAA TAGCCAAAGA
TCAATAATAT TTAAAAGATC AATATCAGTA GTAAACTTTA TCTTCATTAA AATACCTTCA TATATAAGGG TTGTCATTAA
TTTGTATTAG TTATACATAT TTGCAGGTGC GCAAAATGGA AGATCTTAAC AAACAATTGG AATCTAAGGT TTTTCCTTTA
TTTTGATGAA AATGCAATAT AATTGAGAGA AGCCATAACA TGTTAACATT TTTTTTTATG ATATTTCATT TTATGCATTT
TTTTCAAATT TATTTTGTAG GAAAAAGATG AATTCTCAAA CCTCATTCTT GAGAGTAACA ATTTTTTTCA ACTGCATGCT
ACACAAGCCG ATCAATTTGA ATCTGGAACA ACACTAAACA CATGGTATGC ATTCATTTTC TTATCCTTTT ATTTTATTAA
TTTATCAAAA AAAATCATTT ATTAGTAAAC ACATCTAAGT TATGTTGAAT TTTTTAGATA AATTAGGCAA TGAAAGGTCG
TAGGCAAAAA GTCCAAGGCC CAAATTGAAA AAGGGCTGCA AATAGCAAAG TGAGGGTTCA CATACAAACT CTTTTAGAAA
CTTTGCTAAT TTTCTTCAAA AAAAAATAAA ACCTCTTTTT TAATAAACTA ATGATATCTC CCTAAAATAA ATTAAAATAA
TAACAAACTT TATTTATATG TAAAAAAAAA ATTGGAGAGA AAATTATGTA TACAAAGCAA TAAAAAAATC TTTAGTAATT
GACGCCTTAG AAGATTAGTC ATTTACTCCT TAATATTCTT ATAACATTTC TAGGAATAAA TTACAGTGAT TCAAAGAATT
TTTCTTCAAC TCTTTGATTT TTTCAAACTT GTGTAGTCTA CAAATAGGTT TAGTCATTGA ACCAGTATAT GAAAATTTCC
TTCCTATAAT GTAAATTTTT CTTTCATAAA AGACTATTCA CGCTATATTA CATAAAAAAA AATGTTCTTA TATACAATTT
TTATAGAAAA ACTCCATAGA TTTATTTTCA TTCTCCATGT AAAATTCCAT AAAATGGATA ATTATAGTTT TAAAATATAA
GTTAAGCTCT TCAATATGTG TTATAAGTAT AGAGTCATAT TTATATATAA ACATATAATA ATTTATTGAC CTTTTGATGA
AAATAATATA TATTGTTGTA GTAGGTTTCA ACAGCAAGAA GTTGGTTCGA AAGAAAGAGC AATTGATACA AGGACAGAGG
GTAACCATAG CACTCACACC AAAAGCAATG GATGGTTGTA GTGAATGTTA ATGTATTTTA CATAAATGTT CCAAAAACAC
TTATTTAGGG TATACCTTGC ATTGGTATTC ACACAATAAT TTTTATAAAG TAAATGTTAT TTCAACTCAA CACTCTCTCG
TTAAGGGATT ATGC

>Vigan.11G195000.01
TTGGAAGTGA CGGGTAAAGT GTTCCGCACT TGACCAGAGA GTATTCTTTG TATTCCTTCT AATATATGTC TTATAAAATA
ATTAAGATCT TGACTTTCTC ACTATCTTAA TGCTCATTAA AAATTGTTAC ATCTTATTTT CTTTTTTATT TTATGAATCA
CATCCATTCC TTCTGTTGAA ACAGTTTTGC TCCAATCAAA TAAACTTACT ATAAAGTTTT TGAGGCATTT ATTATAAGAT
TACATGGTTA AGGTGAAAGA GTTTTATGTG ATTGGTTTAA ACAGAGTGAG TGGTTCTCGT TTTCAACTTT TTGTTTACGC
TTTACACGAA TGCATTTGAA CTTGAAAAGC AATAATGGTA ATTAGTAGTA GTTGGTAAAT CACGAAAACT TTAACTTCAC
GATGAGTTCT TGACCTGATA TTGCGGGGAA AAGCGTGGTC ATTAGTTTGG AGATAGAAGT AGAATATGGA ATCTTGATCG
TATTATCTTC GCTGTCCCTT ATGCATGTGC TTATCTATAA CCCCTTCTGC AGTTGAATAT ATAAGTAAAA CAAACTGCAA
TTTACAACCA TATACTTAAT ATTTTACTGT GAGAGAGAGA GAGAAAAAAA AAAGCATGGG AAGAGGAAGG GTTGTTCTTG
AGAGAATAGA GAACAAGATC AACCGTCAAG TAACGTTCTC AAAGCGCAGA AGTGGGTTGC TGAAGAAGGC CTTTGAGCTT
TCTGTGCTCT GTGATGCAGA AGTTGCCCTT ATCGTCTTTT CTAGCCGTGG GAAGCTTTTT CAGTATAGCA GCACTGATAT
TAATAAAATC GTTGAGAGGT ATCGCCAATG TCGTTACAGC AAGTTACAGA CGGGTGATTC ATCGGAACTC GAATCACAGA
GTTCATATCA TGAATTCTTG AAATTAAGAG CGAAATACGA ATCTCTTGAG CGGACACAAA GGCATTTTCA AGGAGAAGAA
CTTGAGCCTC TTAGCTTTAA AGAATTGCAG AGCCTTGAGA AACAACTAGA TATTACACTT GCTCTAACTC GACAGCAGCA
AACAAAGAAG CTCATGGCAC GAGCTGATGA ATTACGCGAA AAGGTGCGCA AAATGGAAGA TCTTAACAAA CAATTGGAAT
CTAAGGAAAA AGATGAATTC TCAAACCTCA TTCTTGAGAG TAACAATTTT TTTCAACTGC ATGCTACACA AGCCGATCAA
TTTGAATCTG GAACAACACT AAACACATGT AGGTTTCAAC AGCAAGAAGT TGGTTCGAAA GAAAGAGCAA TTGATACAAG
GACAGAGGGT AACCATAGCA CTCACACCAA AAGCAATGGA TGGTTGTAGT GAATGTTAAT GTATTTTACA TAAATGTTCC
AAAAACACTT ATTTAGGGTA TACCTTGCAT TGGTATTCAC ACAATAATTT TTATAAAGTA AATGTTATTT CAACTCAACA
CTCTCTCGTT AAGGGATTAT GC

>Vigan.11G195000.01
ATGGGAAGAG GAAGGGTTGT TCTTGAGAGA ATAGAGAACA AGATCAACCG TCAAGTAACG TTCTCAAAGC GCAGAAGTGG
GTTGCTGAAG AAGGCCTTTG AGCTTTCTGT GCTCTGTGAT GCAGAAGTTG CCCTTATCGT CTTTTCTAGC CGTGGGAAGC
TTTTTCAGTA TAGCAGCACT GATATTAATA AAATCGTTGA GAGGTATCGC CAATGTCGTT ACAGCAAGTT ACAGACGGGT
GATTCATCGG AACTCGAATC ACAGAGTTCA TATCATGAAT TCTTGAAATT AAGAGCGAAA TACGAATCTC TTGAGCGGAC
ACAAAGGCAT TTTCAAGGAG AAGAACTTGA GCCTCTTAGC TTTAAAGAAT TGCAGAGCCT TGAGAAACAA CTAGATATTA
CACTTGCTCT AACTCGACAG CAGCAAACAA AGAAGCTCAT GGCACGAGCT GATGAATTAC GCGAAAAGGT GCGCAAAATG
GAAGATCTTA ACAAACAATT GGAATCTAAG GAAAAAGATG AATTCTCAAA CCTCATTCTT GAGAGTAACA ATTTTTTTCA
ACTGCATGCT ACACAAGCCG ATCAATTTGA ATCTGGAACA ACACTAAACA CATGTAGGTT TCAACAGCAA GAAGTTGGTT
CGAAAGAAAG AGCAATTGAT ACAAGGACAG AGGGTAACCA TAGCACTCAC ACCAAAAGCA ATGGATGGTT GTAG

>Vigan.11G195000.01
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSS RGKLFQYSST DINKIVERYR QCRYSKLQTG
DSSELESQSS YHEFLKLRAK YESLERTQRH FQGEELEPLS FKELQSLEKQ LDITLALTRQ QQTKKLMARA DELREKVRKM
EDLNKQLESK EKDEFSNLIL ESNNFFQLHA TQADQFESGT TLNTCRFQQQ EVGSKERAID TRTEGNHSTH TKSNGWL*