GBrowse Details

Vigan.11G193900.01

Basic Information:
Name: Vigan.11G193900.01
Multiple alignment
Variant Information
Position: Chr11:31778223..31782238 (- strand)
Length: 4016
Functional Information:
Description: Similar to Uncharacterized protein. [I1MQ30, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Alcohol dehydrogenase, zinc-type, conserved site (IPR002328)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase, C-terminal (IPR013149)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:89.91,11.76,25.03,102.04,40.27,52.25,35.72,22.85
Arabidopsis thaliana homolog: AT5G51970.1
Automatic updates:
Name: NM_001252732 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative sorbitol dehydrogenase (LOC100791559), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:31778223..31778507 (- strand)
Length: 285
Type: three_prime_UTR
Position: Chr11:31778508..31778700 (- strand)
Length: 193
Type: CDS
Position: Chr11:31779208..31779395 (- strand)
Length: 188
Type: CDS
Position: Chr11:31779665..31779955 (- strand)
Length: 291
Type: CDS
Position: Chr11:31781339..31781575 (- strand)
Length: 237
Type: CDS
Position: Chr11:31781828..31781895 (- strand)
Length: 68
Type: CDS
Position: Chr11:31782018..31782135 (- strand)
Length: 118
Type: CDS
Position: Chr11:31782136..31782238 (- strand)
Length: 103
Type: five_prime_UTR

>Vigan.11G193900.01 class=Sequence position=Chr11:31778223..31782238 (- strand)
AGAAAGAATA AATCATTGTT CACTGCAGGG ATCACTTTGT CATAACTGAA AGTAGAAATC TTTCTATCAT AGAAAGTTGC
TAAAGATTAG AAAGAGAAGG GAAATGGGTA AGGGAGGAAT GTCAATTGAT GATAATGGAG AAGACAAAGA GCAGAATATG
GCTGCTTGGC TTCTGGGTAT AAACAATCTC AAGATTCAAC CTTTCGAGCT TCCTATTCTA GGTATTCATT TTCCCACAAT
TAACTCAATC ATTTCAATCT GGTTTTTTCT GTCTTCAAAT CCTTTTATGG ATGATGTTTC AATGCCATTT TCAATTATTT
TCAAATCATT TGTGTTTTGG AAGGACCCCA TGATGTCAGA GTTAGAATGA AAGCTGTTGG GATCTGTGGG AGTGATGTTC
ACTACCTCAA GGTACATATA GTCCTGTTGC ATCTACTTTC AATAGTGAGA TTAGAAGGGA TGAAGTTGTG TTGGAGGAGT
TTGATTATCT ATGTCTAAGC AATCTATGAT TGATTAGATT AATTTTATTT ATTTATTTTT TGCATTTTTT GGATATAAGT
TTTTGCTTAG GTTGAAATTT TTCTTTGCAG GGGTTATTTC CTGCATTTAT CTATGTTCTC TCCAGTGAAA ATTTTCAAAT
TTGTTGTTTC GTTTACATTT CAGACACTGA GGTGTGCACA CTTCATAGTT AAGGAACCAA TGGTAATTGG TCATGAGTGT
GCTGGGATCA TAGAAGAAGT TGGTAGTGAG GTAAACAATT TGGTGCCTGG TGACCGTGTG GCGCTTGAAC CTGGGATCAG
TTGCTGGCGA TGCGGCCACT GCAAACAGGG TCGATATAAT TTGTGTGATG AAATGAAGTT TTTTGCTACT CCACCAGTTC
ATGGTTCCCT GGCTAATCAG GTTTGAAACA ATTCACAGAT GCTCAAAAGT ATTATTCTTT CAGTCATGTG CAACTTGAAA
TATACATGGC TTTTGAAATA ATAAGAATTT GGAAGAAACA ATGACATGTT CAAGTCAAAT TTCATGCCAT TAAGTATAGA
ATCAGTTAAC AAAACTGCTT TAAAATCCTA TCAAGACACT AACTGCCTAA TATTGTAGAC GAAAAATTTT AAAACCATGC
GATGAATAGG TAATGTGATC TGTTCTAATC TGTTTCTATA AATGTCTGCA CAAATCATCA TTATAGTTTC ACAAATGCTT
TTTCATTTTA CAAATGTGTA AATTCAGACC ATCTAAAAGG ACACATAGAA TGACACCTGT ATATTATATC CAAGAGACTG
TTCTTTGTAT GCCTCATCAT GAGAGATTCG CGTAGAATAT CCTCAAATGT TGTGATTTTA TTCCAGATTA AGCATAAATA
AATTCATGGA ATTTCTGAAG AAACAAGTAA AATGTTGAAA TGAAGCTGGT GACCAACTGT TTTCATGTCA ATGACTCTCA
ATTACAAGTT GGAAGTTTCT TTGTCAATTT TCTCCCCCAC CTTTGATTTA TCAAATATCT ATAATAAGGA ACTGAAAATG
AAAATTTATT TTATTTTGAG TTTTAACACC AAATTGTGGC AAACTTTGTG CACTTGGATA CTTGATTCCA CAACTGTGCT
ATGAAGGGTA TGCCTTTTGA AATCAAGCTG AGGCCTTTAT AAACCAAGGA ATTGTTTGTC TAGATGGACA TCTGGTTATT
CTGGGATGGA ATCTACTGTC TGTTAGAAAA TATCAATTGA TTAATAGGTT TCGAAAATTA TAATTAGTAA ATATAGTTAT
ATTCAATCGA GAATTAAAAT CATGGATACC ATCTTAGTAT CTTAATTAAC ATGCTGTATG TATTAGTATC ATCAGGTTTC
CATATGATAA TCTTCATCAC TTGTTCACAG AAACATTATA ACAACGTAAA TGATTGCTTT ACAGAATATT TATTGAACAC
AAAGCTTTGA ACCATACATA TTGCTTAAAA TGTTACGAAT AAAACTTGCA AGAATGTACT CAAGTTGCAA GGATAATATG
CTGTCAAGTT TGATATTTAA TGTTGAATAT GATTTTCTTC AATGTGAATT ATGATTTTTG CATTGGAAAG TGTTCTATTT
AAAACTGCCC TTACTCTGAT TCCAGGCATG TAATTGGAAT TGAACTCTTC TGCTGAATAT TCCTAAGTAT GAAATAATGG
TTATCAAGTA GTCTATCATG TACATATGAT GTGACCATGA CTAGTAAATT ACAAATAATA ATTATAGCCA TTTGTGAACT
CCAATGGAAA CCCTTGTATG ACTTTCCTTT TTCTCTTTTG TAGATAGTGC ATCCTGCAGA CCTATGTTTT AAGCTTCCAG
ACAACGTGAG TCTAGAGGAG GGGGCCATGT GTGAACCCTT AAGTGTTGGT ATTCATGCTT GTAGGAGAGC TAATATTGGA
CCAGAAACCA ATGTGTTGAT CATGGGAGCT GGACCCATAG GACTTGTTAC ACTGCTTGCA GCTCGTGCTT TCGGAGCACC
CAAGACTGTC ATTGTTGATG TTGATGACTA TCGTTTATCT GTTGCAAAAT CTCTTGGTGC AGATGACATT GTTAAAGTCT
CAACAAACAT TCAGGTATTT AGAATCGTTA TGTCTCCATT CATCATTTCC TATATATTCT GTTGACACTT AATATGCTCT
TCTCCCTGAA AGAACTGTTG TTGGATCACC ACTTGTTACT CTCTATCTTC AGTTGTCAGG TTTTAGTGCA TGGTTTCCGC
AATATGGTTC TGAAAGAAAT CCATTTAAAT GTGTCTGTGT GACACATTTA TATATTTACT ATGCATTTCT GTGTGCATCC
ATGAATAGCA AAGAAACCAT ATTTTAAATG CACTGCTTTG CAGGATGTGG CTGAAGAAGT TGAGCTGATA CAAAAGGTTA
TGGGAGCTTC TATAAATGTT ACCTTTGATT GTGCTGGTTT TGACAAAACC ATGTCTACAG CATTGGGTGC TACTCAGCCT
GGTGGCAAAG TTTGCCTAGT GGGAATGGGA CATTCTGAAA TGACTGTCCC ACTCACCCCT GCAGCAGCAA GGTATCTGTT
GATTTTATTA AAAAGGTTAA ATGTGATTTT AACTCAATTT GAAACTTTGA TACATTTTAA CTTCTAAACT TTAAAAAGTG
AAAGAATATA ATTATTTTAA CCTTAATTTT TTTAGGTGTT AAACGGTATT TTATATTAAC ATTTGAGCTC AAACGTGTTA
AACGATGTAA ACAACTCAAA TCTCAACCTG AAATACCACT TGATACGTCA AAAGAAAGTT AATGCAATTG AGTTAAAATG
ATTATTCATT TATTGTTAAG CTGGAAGGCC AAATTGTATC CAAGTTTGGA ATCCGGACAA ATTCCAATTT TACATTAAGA
TTTAAAGACT TGAAAGATAT TTATCCTTTA TTAAAATATT AAATAACAAA AGCTTATGTT ATGTTTTAGA GTATTTGATA
CATGCATAGA CTACGTATAT CAGATACAAC AATTTGATTA TTTAAAAAAG TTATGATGTG TAACATTTGG TAGTGATGGT
TTATGATACA TAATTCAGGG AAGTTGATGT GATTGGAGTT TTTCGCTATA TGAACACATG GCCTCTTTGT CTTGAGTTTC
TAAGGAGTGG GAAAATCGAT GTAAAACCCC TTATAACTCA CAGGTTTGGG TTCTCTCAAA AGGAAGTGGA AGAAGCTTTT
GAAACAAGTG CTCGTGGTGG TACTGCCATC AAGGTCATGT TCAATCTTTA GAAATTGTCT TATTTTGAAC AAATCATATA
CTTTCATGCT CATGCTCATG CTCATGCTAA ATACCAATGT AATGATCACT TGGGTTATGA ATAAAGTGGC TCCAAGAAGA
ACTTGTGAAA ATGTGAATGG TAACTGCAGC ATCTACAGAT TCAGTTATGA GGTGAAACCT TTGCTTTGTG AATGAGTAAA
CCTTCAAATT CGTTCATCAG TCATTGAGAG ATTAAATCTT CATTCTTGGT TCTTAAGAAT CATGAATGCT GCACACAAAT
AATTTGAATA CTACTC

>Vigan.11G193900.01
AGAAAGAATA AATCATTGTT CACTGCAGGG ATCACTTTGT CATAACTGAA AGTAGAAATC TTTCTATCAT AGAAAGTTGC
TAAAGATTAG AAAGAGAAGG GAAATGGGTA AGGGAGGAAT GTCAATTGAT GATAATGGAG AAGACAAAGA GCAGAATATG
GCTGCTTGGC TTCTGGGTAT AAACAATCTC AAGATTCAAC CTTTCGAGCT TCCTATTCTA GGACCCCATG ATGTCAGAGT
TAGAATGAAA GCTGTTGGGA TCTGTGGGAG TGATGTTCAC TACCTCAAGA CACTGAGGTG TGCACACTTC ATAGTTAAGG
AACCAATGGT AATTGGTCAT GAGTGTGCTG GGATCATAGA AGAAGTTGGT AGTGAGGTAA ACAATTTGGT GCCTGGTGAC
CGTGTGGCGC TTGAACCTGG GATCAGTTGC TGGCGATGCG GCCACTGCAA ACAGGGTCGA TATAATTTGT GTGATGAAAT
GAAGTTTTTT GCTACTCCAC CAGTTCATGG TTCCCTGGCT AATCAGATAG TGCATCCTGC AGACCTATGT TTTAAGCTTC
CAGACAACGT GAGTCTAGAG GAGGGGGCCA TGTGTGAACC CTTAAGTGTT GGTATTCATG CTTGTAGGAG AGCTAATATT
GGACCAGAAA CCAATGTGTT GATCATGGGA GCTGGACCCA TAGGACTTGT TACACTGCTT GCAGCTCGTG CTTTCGGAGC
ACCCAAGACT GTCATTGTTG ATGTTGATGA CTATCGTTTA TCTGTTGCAA AATCTCTTGG TGCAGATGAC ATTGTTAAAG
TCTCAACAAA CATTCAGGAT GTGGCTGAAG AAGTTGAGCT GATACAAAAG GTTATGGGAG CTTCTATAAA TGTTACCTTT
GATTGTGCTG GTTTTGACAA AACCATGTCT ACAGCATTGG GTGCTACTCA GCCTGGTGGC AAAGTTTGCC TAGTGGGAAT
GGGACATTCT GAAATGACTG TCCCACTCAC CCCTGCAGCA GCAAGGGAAG TTGATGTGAT TGGAGTTTTT CGCTATATGA
ACACATGGCC TCTTTGTCTT GAGTTTCTAA GGAGTGGGAA AATCGATGTA AAACCCCTTA TAACTCACAG GTTTGGGTTC
TCTCAAAAGG AAGTGGAAGA AGCTTTTGAA ACAAGTGCTC GTGGTGGTAC TGCCATCAAG GTCATGTTCA ATCTTTAGAA
ATTGTCTTAT TTTGAACAAA TCATATACTT TCATGCTCAT GCTCATGCTC ATGCTAAATA CCAATGTAAT GATCACTTGG
GTTATGAATA AAGTGGCTCC AAGAAGAACT TGTGAAAATG TGAATGGTAA CTGCAGCATC TACAGATTCA GTTATGAGGT
GAAACCTTTG CTTTGTGAAT GAGTAAACCT TCAAATTCGT TCATCAGTCA TTGAGAGATT AAATCTTCAT TCTTGGTTCT
TAAGAATCAT GAATGCTGCA CACAAATAAT TTGAATACTA CTC

>Vigan.11G193900.01
ATGGGTAAGG GAGGAATGTC AATTGATGAT AATGGAGAAG ACAAAGAGCA GAATATGGCT GCTTGGCTTC TGGGTATAAA
CAATCTCAAG ATTCAACCTT TCGAGCTTCC TATTCTAGGA CCCCATGATG TCAGAGTTAG AATGAAAGCT GTTGGGATCT
GTGGGAGTGA TGTTCACTAC CTCAAGACAC TGAGGTGTGC ACACTTCATA GTTAAGGAAC CAATGGTAAT TGGTCATGAG
TGTGCTGGGA TCATAGAAGA AGTTGGTAGT GAGGTAAACA ATTTGGTGCC TGGTGACCGT GTGGCGCTTG AACCTGGGAT
CAGTTGCTGG CGATGCGGCC ACTGCAAACA GGGTCGATAT AATTTGTGTG ATGAAATGAA GTTTTTTGCT ACTCCACCAG
TTCATGGTTC CCTGGCTAAT CAGATAGTGC ATCCTGCAGA CCTATGTTTT AAGCTTCCAG ACAACGTGAG TCTAGAGGAG
GGGGCCATGT GTGAACCCTT AAGTGTTGGT ATTCATGCTT GTAGGAGAGC TAATATTGGA CCAGAAACCA ATGTGTTGAT
CATGGGAGCT GGACCCATAG GACTTGTTAC ACTGCTTGCA GCTCGTGCTT TCGGAGCACC CAAGACTGTC ATTGTTGATG
TTGATGACTA TCGTTTATCT GTTGCAAAAT CTCTTGGTGC AGATGACATT GTTAAAGTCT CAACAAACAT TCAGGATGTG
GCTGAAGAAG TTGAGCTGAT ACAAAAGGTT ATGGGAGCTT CTATAAATGT TACCTTTGAT TGTGCTGGTT TTGACAAAAC
CATGTCTACA GCATTGGGTG CTACTCAGCC TGGTGGCAAA GTTTGCCTAG TGGGAATGGG ACATTCTGAA ATGACTGTCC
CACTCACCCC TGCAGCAGCA AGGGAAGTTG ATGTGATTGG AGTTTTTCGC TATATGAACA CATGGCCTCT TTGTCTTGAG
TTTCTAAGGA GTGGGAAAAT CGATGTAAAA CCCCTTATAA CTCACAGGTT TGGGTTCTCT CAAAAGGAAG TGGAAGAAGC
TTTTGAAACA AGTGCTCGTG GTGGTACTGC CATCAAGGTC ATGTTCAATC TTTAG

>Vigan.11G193900.01
MGKGGMSIDD NGEDKEQNMA AWLLGINNLK IQPFELPILG PHDVRVRMKA VGICGSDVHY LKTLRCAHFI VKEPMVIGHE
CAGIIEEVGS EVNNLVPGDR VALEPGISCW RCGHCKQGRY NLCDEMKFFA TPPVHGSLAN QIVHPADLCF KLPDNVSLEE
GAMCEPLSVG IHACRRANIG PETNVLIMGA GPIGLVTLLA ARAFGAPKTV IVDVDDYRLS VAKSLGADDI VKVSTNIQDV
AEEVELIQKV MGASINVTFD CAGFDKTMST ALGATQPGGK VCLVGMGHSE MTVPLTPAAA REVDVIGVFR YMNTWPLCLE
FLRSGKIDVK PLITHRFGFS QKEVEEAFET SARGGTAIKV MFNL*