GBrowse Details

Vigan.11G175600.01

Basic Information:
Name: Vigan.11G175600.01
Multiple alignment
Variant Information
Position: Chr11:29038791..29041844 (- strand)
Length: 3054
Functional Information:
Description: Similar to Uncharacterized protein. [G4Y9K1, Glycine max]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Fatty acid hydroxylase (IPR006694)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.65,55.44,97.16,28.94,7.43,14.59,2.73,14.33
Automatic updates:
Name: NM_001253005 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max beta-carotene hydroxylase 2, chloroplastic-like (LOC100813368), mRNA.
PubMed ID: 23700351 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:29038791..29039181 (- strand)
Length: 391
Type: three_prime_UTR
Position: Chr11:29039182..29039265 (- strand)
Length: 84
Type: CDS
Position: Chr11:29039432..29039488 (- strand)
Length: 57
Type: CDS
Position: Chr11:29039970..29040095 (- strand)
Length: 126
Type: CDS
Position: Chr11:29040287..29040421 (- strand)
Length: 135
Type: CDS
Position: Chr11:29040737..29040808 (- strand)
Length: 72
Type: CDS
Position: Chr11:29040941..29041000 (- strand)
Length: 60
Type: CDS
Position: Chr11:29041230..29041616 (- strand)
Length: 387
Type: CDS
Position: Chr11:29041617..29041844 (- strand)
Length: 228
Type: five_prime_UTR

>Vigan.11G175600.01 class=Sequence position=Chr11:29038791..29041844 (- strand)
ATTGTTTAAA AAAATAAAAA ATTATCCATT GGTTGTGTCA GCGCATTTCA GCAATATTTT TCTCTGTTTC TACAGTGTCA
CCCACACAAA AGAACGAAAG AGAAAAATTG TGGACTCTGT TCATCCCCTT TTAAAACCTT CACTTCAAAC CTTTCCTCTT
CACACACAAC ACAAATACCT CTCTCTTTCT CTCTCTCTCT CTCTTACACA CTCACACACA CTTCAACCAT GGCGGTAGGA
CTCTCCGCCG CCATAACCTT GAAGCCCTTC CTCCGCTACC ACCATCCCCA CTTTCCCAAA CCAATTCCAG CCACACTTCC
TTTCTCTCCC TTGAGAAATT CCCACCACAC AACCTTCTTG AAGACCCAAA AGTTGTCACC TTTCACTGTC TCTGTCCTAA
CGCAGGACCC CAAAAAAAGC ACCCACATGG AAATTGAGGA CCAGGAGCAG CCATCACCTT CTCCTCCACA AGTCTTGTCA
CCAAAGTTGG CGGAGAAGCT AGCCAGAAAA GAGTCTGAGA GGTTCACCTA CCTTGTCGCT GCTGTCATGT CCAGCTTCGG
GGTCACATCC ATGGCAGTGC TCGCTGTTTA TTACAGATTC GCGTGGCAAA TGGAGGTAAA ATTTGACCCC TTTTCTTACT
CTTCTTGCCA AGGTTTCAAA AAAGGTTGCA TGTTCCATGT GATCCCGATG TTGCAAAAAA TTACTGACAA ACGAGATAAA
TGTGATTCTG TTGCCGTCTT TTTTACAATT GTTGCTTGTG TGTCTTTGAC ATTGTTGTCA TGCATGATTG GTGATTTGCA
TGTGAAGATA ATTTGGTTGT GAAATTGGGT TTGGTTTTGT GTAGGGTGGA GAAGTGCCTT GGTCTGAAAT GTTTGGCACA
TTTGCTCTGT CAGTGGGTGC TGCTGTAAGT AGTCCTGTTG ACTGATTATG ATTTCAATTC ATTCAGTATT TTTTTTTTAT
GGTTTGGGGA TTCATATCGG GTATGTCTTT TGGGAATTTC GATCAGAAAA TTCAACTGGG TATGTCTGAT TTTCAGGTGG
GTATGGAGTT TTGGGCTAGA TGGGCTCATA AAGCTCTCTG GCATGCTTCC TTGTGGCACA TGCATGAGGT ATGCTTTCAG
TTCTTTCATC TGCATCCTGT TTCTTCTTCA CTGTTTAACT CAATTTACTC AAGTACTTTG TTTAGTTCAT TCTGGTCCTC
ATATTTAAGT GAATTTATTT TTTAGTGTTT ACATTTTATT TGACAGACCA ATTCCCATAA AAATGAACAT TCTGAACACA
CTTTTTTTTA CTAATTGTTT GCACCACAAA GTGTCAAATG ATTCGGTTTT TTGGTGAATC CTTGTGATGT CTCAGCAACC
AATGGCCAGA AACTACATGA TCTGCTTCAC ACAAACTAAC AAATTTCTTT ACTTCAATTG CAGTCCCACC ATCGACCAAG
AGAAGGACCC TTCGAACTGA ACGATGTATT TGCCATAATC AATGCTGTCC CTGCCATCGC TCTCCTTTCC TACGGTTTCT
TTCACAAGGG ACTCTTCCCT GGCCTTTGCT TCGGTGCGGT GAGTGAATTC CCAAAAATTC AAACTAAATA TATTAATCCT
TTTTGTTATA TCTTAATTAA GAGTTTGATT GGGAGTGAAA TTCTTAATTA ACAGTTTCGT AGGAAAAGAG TTTTCATTAA
ACAATGATTA CTGCATAGAC TTTATTGTCA AACGAACACT TTTACTAAGA TACCTTCAAC TATGAACAGG GTCTTGGAAT
TACTGTCTTT GGGATGGCCT ACATGTTTGT ACACGATGGC TTGGTTCATA AGAGATTCCC TGTGGGCCCC ATTGCCAACG
TGCCCTATTT AAGAAGAGTG GCTTCTGCTC ACCAAGTAAG TATCATCATC ATTAGATAAC ATTATGCACA AAAAATCATT
CTTTTTTATT ATAATAAATG TTCTCACTTT CAAATCCATC TTTATACTAA TAATACCATT CTGAATAATA CATCTTCATC
TTGGTATATT CTTTTATACA ATTCGTGTAT GCCTTTACAC TTCACTATTT TTATATATTT ACATTCTTAA AACCCATATT
GTCTATTATT TTATTTGTAT TTTAACTTTC GGGAATTTAA AAAATTAATT TAATCATCAA ATTATGATTT TTACTCAGTT
TTTAATTTCA AGACTCTGCT ACATTAGTTT GCTTTAAGAT TCGTGTTTTG AATTTAAGAT CCCTGTTAAG GAGCAAAAAG
AGATAGATAA ACATACTTAA CATTTTGATT TTCTCAAAGC AAAAGTAAGT AAGTATTTGT GTTAAGTTCA TTTTCATGTT
CTGATACCCG TGATACTGTT CTTGTCTTTA TCTCAGCTTC ACCATTCAGA AAAATTTGAT GGTGTGCCGT ATGGGCTGTT
TATGGGACCA AAGGTATGCT GCATTTTGTT TCTTTTCGTT GTTCATGTCT ATTTTATAAT TCTTTTGAAT TTATATTTCA
GGTTTTAGTT TTCTATTCTT CTTGGAATTA TTAATTTTCT GTTGATTACC TCAAACTTTG ATCATTAATG TCAGTGAAAA
TGTTAAATAT GAAATGCAGG AAGTTGAAGA AGTGGGAGGG CTAGAAGAGC TGGAGAAAGA GATAAGTAGG AGAGCAAGAT
TACACAAAAA CAGTTCATCA TAAAAGCTAG TACAAATCCT TAATTAGCTG TTTCAAAGAA TCACCAATGT AAAGCAGAAA
TGTGAAATAA ATTGATCCAA AAAATTTTGC TAGCATATAC ATATATAAAA TCCTTTACAG CATGACATAA CATCAAAGAT
AAACATGAAA TAACAGTAAT AAAGAAAAGG TGGTGGTTGC AAACATTTCT GCAAACATTT TCTTATTCTG AGGTTTATTC
TCTGTGTGAT GAAGTCCAAA ACATGACTAT AAAAGTTAGG AGTGACAAAA TGTATTAACC CGATTTGGTT AAGTTTTGTT
TCGACGTGGT TAAAAATAGG TTGGAATTGG ATGAGGTCAA TTGAAAACAG ATTAAACTTT ATAATCTGAT TGGCTAATGG
ATTTGTTTTT TTTT

>Vigan.11G175600.01
ATTGTTTAAA AAAATAAAAA ATTATCCATT GGTTGTGTCA GCGCATTTCA GCAATATTTT TCTCTGTTTC TACAGTGTCA
CCCACACAAA AGAACGAAAG AGAAAAATTG TGGACTCTGT TCATCCCCTT TTAAAACCTT CACTTCAAAC CTTTCCTCTT
CACACACAAC ACAAATACCT CTCTCTTTCT CTCTCTCTCT CTCTTACACA CTCACACACA CTTCAACCAT GGCGGTAGGA
CTCTCCGCCG CCATAACCTT GAAGCCCTTC CTCCGCTACC ACCATCCCCA CTTTCCCAAA CCAATTCCAG CCACACTTCC
TTTCTCTCCC TTGAGAAATT CCCACCACAC AACCTTCTTG AAGACCCAAA AGTTGTCACC TTTCACTGTC TCTGTCCTAA
CGCAGGACCC CAAAAAAAGC ACCCACATGG AAATTGAGGA CCAGGAGCAG CCATCACCTT CTCCTCCACA AGTCTTGTCA
CCAAAGTTGG CGGAGAAGCT AGCCAGAAAA GAGTCTGAGA GGTTCACCTA CCTTGTCGCT GCTGTCATGT CCAGCTTCGG
GGTCACATCC ATGGCAGTGC TCGCTGTTTA TTACAGATTC GCGTGGCAAA TGGAGGGTGG AGAAGTGCCT TGGTCTGAAA
TGTTTGGCAC ATTTGCTCTG TCAGTGGGTG CTGCTGTGGG TATGGAGTTT TGGGCTAGAT GGGCTCATAA AGCTCTCTGG
CATGCTTCCT TGTGGCACAT GCATGAGTCC CACCATCGAC CAAGAGAAGG ACCCTTCGAA CTGAACGATG TATTTGCCAT
AATCAATGCT GTCCCTGCCA TCGCTCTCCT TTCCTACGGT TTCTTTCACA AGGGACTCTT CCCTGGCCTT TGCTTCGGTG
CGGGTCTTGG AATTACTGTC TTTGGGATGG CCTACATGTT TGTACACGAT GGCTTGGTTC ATAAGAGATT CCCTGTGGGC
CCCATTGCCA ACGTGCCCTA TTTAAGAAGA GTGGCTTCTG CTCACCAACT TCACCATTCA GAAAAATTTG ATGGTGTGCC
GTATGGGCTG TTTATGGGAC CAAAGGAAGT TGAAGAAGTG GGAGGGCTAG AAGAGCTGGA GAAAGAGATA AGTAGGAGAG
CAAGATTACA CAAAAACAGT TCATCATAAA AGCTAGTACA AATCCTTAAT TAGCTGTTTC AAAGAATCAC CAATGTAAAG
CAGAAATGTG AAATAAATTG ATCCAAAAAA TTTTGCTAGC ATATACATAT ATAAAATCCT TTACAGCATG ACATAACATC
AAAGATAAAC ATGAAATAAC AGTAATAAAG AAAAGGTGGT GGTTGCAAAC ATTTCTGCAA ACATTTTCTT ATTCTGAGGT
TTATTCTCTG TGTGATGAAG TCCAAAACAT GACTATAAAA GTTAGGAGTG ACAAAATGTA TTAACCCGAT TTGGTTAAGT
TTTGTTTCGA CGTGGTTAAA AATAGGTTGG AATTGGATGA GGTCAATTGA AAACAGATTA AACTTTATAA TCTGATTGGC
TAATGGATTT GTTTTTTTTT 

>Vigan.11G175600.01
ATGGCGGTAG GACTCTCCGC CGCCATAACC TTGAAGCCCT TCCTCCGCTA CCACCATCCC CACTTTCCCA AACCAATTCC
AGCCACACTT CCTTTCTCTC CCTTGAGAAA TTCCCACCAC ACAACCTTCT TGAAGACCCA AAAGTTGTCA CCTTTCACTG
TCTCTGTCCT AACGCAGGAC CCCAAAAAAA GCACCCACAT GGAAATTGAG GACCAGGAGC AGCCATCACC TTCTCCTCCA
CAAGTCTTGT CACCAAAGTT GGCGGAGAAG CTAGCCAGAA AAGAGTCTGA GAGGTTCACC TACCTTGTCG CTGCTGTCAT
GTCCAGCTTC GGGGTCACAT CCATGGCAGT GCTCGCTGTT TATTACAGAT TCGCGTGGCA AATGGAGGGT GGAGAAGTGC
CTTGGTCTGA AATGTTTGGC ACATTTGCTC TGTCAGTGGG TGCTGCTGTG GGTATGGAGT TTTGGGCTAG ATGGGCTCAT
AAAGCTCTCT GGCATGCTTC CTTGTGGCAC ATGCATGAGT CCCACCATCG ACCAAGAGAA GGACCCTTCG AACTGAACGA
TGTATTTGCC ATAATCAATG CTGTCCCTGC CATCGCTCTC CTTTCCTACG GTTTCTTTCA CAAGGGACTC TTCCCTGGCC
TTTGCTTCGG TGCGGGTCTT GGAATTACTG TCTTTGGGAT GGCCTACATG TTTGTACACG ATGGCTTGGT TCATAAGAGA
TTCCCTGTGG GCCCCATTGC CAACGTGCCC TATTTAAGAA GAGTGGCTTC TGCTCACCAA CTTCACCATT CAGAAAAATT
TGATGGTGTG CCGTATGGGC TGTTTATGGG ACCAAAGGAA GTTGAAGAAG TGGGAGGGCT AGAAGAGCTG GAGAAAGAGA
TAAGTAGGAG AGCAAGATTA CACAAAAACA GTTCATCATA A

>Vigan.11G175600.01
MAVGLSAAIT LKPFLRYHHP HFPKPIPATL PFSPLRNSHH TTFLKTQKLS PFTVSVLTQD PKKSTHMEIE DQEQPSPSPP
QVLSPKLAEK LARKESERFT YLVAAVMSSF GVTSMAVLAV YYRFAWQMEG GEVPWSEMFG TFALSVGAAV GMEFWARWAH
KALWHASLWH MHESHHRPRE GPFELNDVFA IINAVPAIAL LSYGFFHKGL FPGLCFGAGL GITVFGMAYM FVHDGLVHKR
FPVGPIANVP YLRRVASAHQ LHHSEKFDGV PYGLFMGPKE VEEVGGLEEL EKEISRRARL HKNSSS*