GBrowse Details

Vigan.11G170100.01

Basic Information:
Name: Vigan.11G170100.01
Multiple alignment
Variant Information
Position: Chr11:28352674..28358716 (- strand)
Length: 6043
Functional Information:
Description: Similar to NADH dehydrogenase, putative. [B9RIR5, Ricinus communis]
GO: Biological Process: respiratory electron transport chain (GO:0022904)
Cellular Component: mitochondrial inner membrane (GO:0005743)
Molecular Function: oxidoreductase activity, acting on NAD(P)H (GO:0016651)
InterPro: ETC complex I subunit (IPR006806)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:423.05,306.24,130.72,95.47,199.38,302.43,102.87,86.58
Arabidopsis thaliana homolog: AT5G52840.1
Automatic updates:
Name: NM_001249938 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526984 (LOC100526984), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:28352674..28352887 (- strand)
Length: 214
Type: three_prime_UTR
Position: Chr11:28352888..28353084 (- strand)
Length: 197
Type: CDS
Position: Chr11:28358267..28358579 (- strand)
Length: 313
Type: CDS
Position: Chr11:28358580..28358716 (- strand)
Length: 137
Type: five_prime_UTR

>Vigan.11G170100.01 class=Sequence position=Chr11:28352674..28358716 (- strand)
TTGGGCCATT TGGGCCAAGG AGCTACAGGC CCAGTTTGTG GCCTCTCCAT TTCGTACCCA CCCACGCTCT CATTTCTCCG
AGACTCGAAC AGCATCGTGT TTGGAGACAT TGGCGGAGAG TGAGATCGGA AGGGAAGATG TTTCTACGTG CGGTGGCGCG
GCCGTTGATG GCGAAGGTTA AGGCTTCGAC GGGGATCGTG GGGTTGGAGG TGGTTCCGAA CGCGAGGGAG GTGCTGATCG
GACTCTACAG CAAGACGCTG AAGGAGATCC AGAAGGTTCC AGAAGACGAG GGTTACCGCA AGGCGGTGGA GAGCTTCACG
AAACACCGGC TGAGCGTGTG CAAAGAGGAG GAGGACTGGG AAGCCATCGA GAAACGGCTT TGTTGCGGCC AGGTCGAGGA
ACTCATCGAA GAGGCTCAGG ATGAGCTCAA GCTCATTTCC TACATGATCG GTATTCTCCA TTGCTTCTTC TTTTTTTCTT
TAATTTAAAT ATTAATTTAT TATGAATTTC GTGTTGAGTG GTTTGGTGGA TGATCCTGTG TGGGTTGTGA AATCAATTAA
TCCGATGGTA GAGTAGTCTG GGTTCGACTT TTGAATGTTA GTTGTATGTT TTAATTGGCA ATTTTAATTT CGTTGTGATC
CTTGATATTG CATAGAATTG CTACACATGG GGCTTATGCG GTAGCGGTAG CAAATTTGGT CGTGCACAGG ATGATGTTTT
TAGGTTTAGT TAAAACATTG GTTCTGTGAA GTGACCGCTA GCAGCTCACT AGGGCTGTTG TTGATTGTTG TGATAAGAGT
ATGGCCATAC TAAATCCTTT GGACCTGTAT TATTCTCACA TTTCCAGATT AGGATCTTTA TCTTGTGTTT ACGTTGCTTT
ACAGAGTTTC AAATACTTGT TCAAACATTA TCATCAGTGA CATTTTAACA GTAAGTGTGC TGTATTATGC TATCCTGCTC
AAACATTTTG GATTGAGTCA GAGCTACGAT AAAGATACTA AATGCAATAT GAAAGCCAGT TAGTTCTCCA TCAGTCACGT
TTATCACCAA CATATAAATA AGCAAAATTC CATAACATAG CTCTTTCAAA GGCGTCTATA CTATATATTA GACTCTCTGT
CAGGCCTATA GGTGTTTGAA CTAAATGAAG GGGAGCAAAA CTCCTTTGAA TATATATATC CTCCTTGTCA TGCAATTTTC
AAGCCTAGCA ATTGTTCTGC AATCACTTCC TCATTATAAC TATGCTCAGT TTTCTTACTT TTCACTGTCC ATGACAATTT
TGTCGTTCAA ACTATGAATG TGTAGTTACA TCTTGTGTGC ATTCCATTTT TTTATCCACA ATCTGTACCT ATTATGGACA
ATATTTATAA ATATCTGTAC AATGCCAAAG TTGGCAATTT TACCAATCTT GTGCAATTTG GAAATGAAAT TACCGTAATG
GTTAAATTTT TTAAAAATTA CAAAGATGGG TACATTCATA AATTTTAAAA AATTTGCCCA TTTTGGTAAT TATGTTTCCA
AATTGCACCA ATATCGTAAA AGTCCCACCA AAGTCATGGG TAATACTTAA ATTCATAATA CATATATATT GTATCGGGTA
GAGTAGTGAT AAGTGGAAGG GAGATACTTT ACCTTAGCTA AGATTTTTTT CTTAGGAAGT TGCACTAAGT TTCATTACTG
TGTAAGAATA ATTAGTTATT GATTGCAAAG GATGAATATA CTTGAAATAA GGAAAAACAA TCCTCTAGTT TCATATGAAC
ATTTGAAGTT TTGTTAGACA TTGATTTCAA TTTTCAGTTG ATTTTGTGTT AAAAAGTGGA TGAGTCAAAT TATCGTGTGG
AACGAAGTTG CATGTACATT TCATCTCCTG ATTTACTTAT CCCATTAAGA TATATTATAG GGTCACTATA TCCCCTGTTA
ACCTTTTACC TATTTATGTG AGTCTTCAGC ATTTGTAATA TTGGTAAATG ATAATTAACA ACTAATCATT GTCATTTCAA
CATCTGTTGT ATAAAAAATC ATTTTATTGC CTATATTGCC TGGTCAGGTT GTAAAGTAAG AGTATTTAAT ATATAATGCA
GCTCGGTCAA TATTAGTCTT GATGGTCCTG AATATATTTC AGTTAAGATA TTTTCCAAGA GTTTATAGCC TACAAATCTT
GGTGGTAGTT AGTCTTGATT ATTTTGTACA TGGTTATTGA ATAGAGATTT GAATCATGGT TATTTTGTTA CAATTTTTTT
TGTATGTCTT GGTGTGACAA CTTGGTCTGG AACAACTTAT GGGTTGTAAT TTTAGTGCTG TTTGTCCACA TGTGTGTTAC
AAACACTTAA AGAGTTGGGA GAGAAACTAA AATTTTACTA TTACTGTTCT CTCTTAACCC TAATACATTA TACTACCCTA
TTTATAAGGG ATAGTAGTTC AACATACAAA GGAAAAACAG AGGGCTCCTA AAAAGCTTAC TATAAAAATA CATTACATTT
CAACACTCCT CCTCAAGCTG GAACATATAG ATCATATGCA CCAAGCTTGG AACATATAAA TTGAATTCTA GGCCCCCTTA
GATTTGGTCA CAATGTCTCT GAGTTGTTCA TTAGAGTTGA CAAACTCAGT AACAAGTTCC TTGGACAACA ACTTCTCTCT
AATAAAATGA TAGTGAATTT CTATGTGTTC TCTCATGAAA CACTAGATTG GAGGCAATAT GAAGGGCTGC TGATTGTCAC
AGTACAATTT CAACTACTCA TTTTCACAAA TTTCAATTCT TGAAGAAGTT GTCTGATCCA CACAAGTTCG CATGTAGTTA
AAGTCCTAGA TCAGTATTTA ACTTCAGCAC TAGATCGAGC AACAACACTT TGTTTTTTAC TTTTCCAAGA TACTAGGTTC
CCTCCAAGTA AAACACAATA TTCTGTAGTA GATCTTTGAT CAATTGGACA ACCAACCCAA TCTGCATCAC AATATCCTTT
GATTCGAGTG CTTCCCTTGT TCTCATACAA CAATCCTTGT CCTGGGTTTT CTTTTACATA TCTAAGGATG TGAATCACTG
TATTCCAATA GTCAACATGT GGATTTTGCA TAAATTGACT CCAACTCCCA CCGGATAAGA AAGATCAGGT CTTGTTATGG
TAAGATAGAT GAGTTTCCCA ACCAGCCTTC TATATCTCTT TGGGTCCGAG AAAGGTTCAC TTTGATCTCT CATTAACTTT
TGATTTGAGT CCATAGGACT ATCATCAGGC TTGCAATTTG TCAGGCCTGT TTCTTCTAAA ATATCAAGAG CATATTTCCT
TTGTGAAATG ATAACACTTT CTTTTGACTA TACCACTTCA ATACAAATAA AATATTTTAG ATGACCCAGA TCTTCAGTCT
TAAAGTGGTT GAACAATTGA TTCTTTAATT GAGTAATTCT AGTGACGTCA TTCCCTGTAA TAACAATATC ATCAACATAC
ACCAGTCATG AGGTCCCTTC TATGGAAACC TTGACCACTT GCTTTCTGCG TGTCCCAACA CCTCAAACTC AGGAAGCTCA
TGAATTGGTG GGACCATCTG TCATGATTGC CAGAGGAGGA AGAGGAGGAC GTGGCACTAG AGGAGGAGGA CGTCCTCAAT
GCATATACTG GAAAAGGATG GGTGACAATC AAGAGAATTG CTACCTCTTG CATGGTTGAA CATCGGTAAT TGAATCTTCT
TCACTCATTG TCTAAATTCA TTGAGGGCAT TATCTTGAAG GGATTTCAAA CCAGTGCTTT TATTTTTGTG CCTCAGCATT
ATCTCATCGT AGAGCTTCAA CTGCTAACTA ATTGGAGGCT GTTTGGTGCC ATAAAGATTC CATAGCCATT CTTATTCGTA
AAAGCTCGTC TTCTACTTGT TCAACATGTG CTTCCATGAT CTTTTGTATT TTGTCCTCTT CTATAGATAA TGTTGATTCC
ACAATCTGCC TCATTCCTCT TTTCTTTCTC TTCCTGGGTA TTCACCGTGA TTATTGAATG ATCCGGTAGG TTGGGCCAAA
AATTGTTACA AGCCAAACAA TAGTGATAAA AGAGAACAGA GAAAATGAGG GCACGGTGAA TTGTATGTTA TTTGCAATGA
AAAGGAAACT ACAATAGGAG GAAACCTCCA ATTGCCCATC GCATAGCTCC TATAACAGAA AATCAGACAA TCAGCTAATC
CCCCTCCCCT TTTGCCTCAT CAGACTAAAT AACAGAAAAT ACTCTCCCCT CTACCAACCT CTCCACTTAC TCATGCAACC
TCAGCTTCTC GGTTTCCCTT CTTTCTTTTG CGCACATCCA CACTTAAACC TTCCATACCT TAGGTGTCAT ATGCCCCTCA
TGGACCAATG GCTTCTTCAA CCCATAAACT TGTTGGGCTC CCACAATGTG TATACTGTAT ATGTGAATGG GGATTTTACC
TTGGATAGGA TACTTTTAAT TTTGCTAATC CAGGTTGAGT TTTGTTCACA TTTTGAATTT GGTAGTTGTT GTCTTTTCCT
TTTATCACAG ATGCAGCCTA GTTCACAAGT TATTTGTTAT TTCTTGACAA TAATTTTAAC TTTGACTCTT CCTTGCTTTA
ATGCAAATCT AAGTCTTTTG TGCATCTCCA AAATTTTGCT GCTTGATAAT CATTCTCACT ATTTAACAAG TAACTTGCCA
TTTCAAGTTT CATTATTTTT ACTTAAACTA GACATTGAAC TAAAATTTTC TTTATGGAAT ATTAAAAAAT TATAATTCTT
TTGAAATCCT GTCGACAACA TTGTTTTCAC TCTTATTCAA ATTTTTGAGA ACGGGAACCA AAGTGAAAAC AAAGTAACAT
TTTTGTAAGT AAAAGTGAGC AAAAAAAAAT ATGTTCTGCA TTCGAACAAT ATTTATATCT TAGTCTCTAT ATATATGTAT
TGTGAATCTC AATTTTGTTC TTACGTGTTC AACTTTATTA AATCAGTCTT AAATGTTCCA GCATTGCATT AAGGATTTGG
TCACTGTGTT GCCATTGTTA ACAACCTTAT GTATTTTTTT TTTCATCAGC TCCCTTGTGT TTTTTTTTTT AATCGACAAA
TGTTAAATGT TAGTATTTTG TTAGTCAAAG AGTTGAACCC ACAACTTTTT TTACCTTTCT TTCTAAACCC TTCAAACCAA
TCTTATATTT TTCAAATGTT AGGGGAGAGT TGAACTCACA ACCTCTTTCA CCCTTCATTC CAACTTTTAC TACTAAAACT
TTTACTACTA AACCAATCTT ATAGCTCCTG TCAGCTCCTT TATGTATTCT AATTTTGCTC TTATACATGT AATACATTCT
TTATTTGGTC TCATTACATT TAACGAATTC TTAATCTAGT TTTTACATGC AAAGGATCAA ATTAAGAATG TGTTACACAC
ATAAGAACCA AATTAAGAAT GCTATGCTCG TTTAACAACC AAATTAACAA TGTACTGCAT GCATAAGCAC CAAAATAAGC
ATTCGTAAGT GTATTAACTG TGACAGAGAC TAAATTGATA ATGTTAAATT TAAAAGGATC AATGTATTGA GTGTTTTTCT
TTTTTTTTAC ATATAGAGAC CAATTTTAGA ACTGAACATA TATTGAAATG TTTTTGCATA AATTGATTAG AAATATGATT
GACGTATATT GAATGTATAT TTTGGAGTGC AGAGTGGGAT CCCTGGGGTG TTCCAGATGA TTACGAATGT GAGGTGATTG
AGAATGATGC ACCTGTTCCT AAGCATGTTC CTCTCCACCG ACCACCTCCT CTCCCTACAG AATTTCACAA GACACTAGAG
GCACTTTCGT CTCAATCAGG AAAAGATATT CCTGTTGCTA GCTCTACTGA ATCAACGTCC AAGACATGAT TTGCACCCTC
ATTAGATCTT TTGTTTCTCC CTTTCACCAT ATTTTTCTTT TCCGTGTTGA ACTATTGCAG TTTGCATGAA CTATAACCTG
AAGCAGTTTT TTTTGGGAGA AAACCTGGCT TCTAAATAAC TTGAATGGTT TGGAATAACA AATGTTTATT GTTTTAACTT
TTCAAGTAAA TAATATTATG CATGGAATAA TTTAGTTCAC ACA

>Vigan.11G170100.01
TTGGGCCATT TGGGCCAAGG AGCTACAGGC CCAGTTTGTG GCCTCTCCAT TTCGTACCCA CCCACGCTCT CATTTCTCCG
AGACTCGAAC AGCATCGTGT TTGGAGACAT TGGCGGAGAG TGAGATCGGA AGGGAAGATG TTTCTACGTG CGGTGGCGCG
GCCGTTGATG GCGAAGGTTA AGGCTTCGAC GGGGATCGTG GGGTTGGAGG TGGTTCCGAA CGCGAGGGAG GTGCTGATCG
GACTCTACAG CAAGACGCTG AAGGAGATCC AGAAGGTTCC AGAAGACGAG GGTTACCGCA AGGCGGTGGA GAGCTTCACG
AAACACCGGC TGAGCGTGTG CAAAGAGGAG GAGGACTGGG AAGCCATCGA GAAACGGCTT TGTTGCGGCC AGGTCGAGGA
ACTCATCGAA GAGGCTCAGG ATGAGCTCAA GCTCATTTCC TACATGATCG AGTGGGATCC CTGGGGTGTT CCAGATGATT
ACGAATGTGA GGTGATTGAG AATGATGCAC CTGTTCCTAA GCATGTTCCT CTCCACCGAC CACCTCCTCT CCCTACAGAA
TTTCACAAGA CACTAGAGGC ACTTTCGTCT CAATCAGGAA AAGATATTCC TGTTGCTAGC TCTACTGAAT CAACGTCCAA
GACATGATTT GCACCCTCAT TAGATCTTTT GTTTCTCCCT TTCACCATAT TTTTCTTTTC CGTGTTGAAC TATTGCAGTT
TGCATGAACT ATAACCTGAA GCAGTTTTTT TTGGGAGAAA ACCTGGCTTC TAAATAACTT GAATGGTTTG GAATAACAAA
TGTTTATTGT TTTAACTTTT CAAGTAAATA ATATTATGCA TGGAATAATT TAGTTCACAC A

>Vigan.11G170100.01
ATGTTTCTAC GTGCGGTGGC GCGGCCGTTG ATGGCGAAGG TTAAGGCTTC GACGGGGATC GTGGGGTTGG AGGTGGTTCC
GAACGCGAGG GAGGTGCTGA TCGGACTCTA CAGCAAGACG CTGAAGGAGA TCCAGAAGGT TCCAGAAGAC GAGGGTTACC
GCAAGGCGGT GGAGAGCTTC ACGAAACACC GGCTGAGCGT GTGCAAAGAG GAGGAGGACT GGGAAGCCAT CGAGAAACGG
CTTTGTTGCG GCCAGGTCGA GGAACTCATC GAAGAGGCTC AGGATGAGCT CAAGCTCATT TCCTACATGA TCGAGTGGGA
TCCCTGGGGT GTTCCAGATG ATTACGAATG TGAGGTGATT GAGAATGATG CACCTGTTCC TAAGCATGTT CCTCTCCACC
GACCACCTCC TCTCCCTACA GAATTTCACA AGACACTAGA GGCACTTTCG TCTCAATCAG GAAAAGATAT TCCTGTTGCT
AGCTCTACTG AATCAACGTC CAAGACATGA 

>Vigan.11G170100.01
MFLRAVARPL MAKVKASTGI VGLEVVPNAR EVLIGLYSKT LKEIQKVPED EGYRKAVESF TKHRLSVCKE EEDWEAIEKR
LCCGQVEELI EEAQDELKLI SYMIEWDPWG VPDDYECEVI ENDAPVPKHV PLHRPPPLPT EFHKTLEALS SQSGKDIPVA
SSTESTSKT*