GBrowse Details

Vigan.11G168600.01

Basic Information:
Name: Vigan.11G168600.01
Multiple alignment
Variant Information
Position: Chr11:28120262..28125296 (- strand)
Length: 5035
Functional Information:
Description: Similar to Uncharacterized protein. [I1MPF6, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide TPR1 (IPR001440)
CS domain (IPR007052)
SGS (IPR007699)
HSP20-like chaperone (IPR008978)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide repeat (IPR019734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.87,34.22,66.63,91.45,44.92,62.13,95.20,73.16
Arabidopsis thaliana homolog: AT4G11260.1
Automatic updates:
Name: NM_001249656 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SGT1-2 (LOC100194421), mRNA.
PubMed ID: 19061405 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:28120262..28120551 (- strand)
Length: 290
Type: three_prime_UTR
Position: Chr11:28120552..28120659 (- strand)
Length: 108
Type: CDS
Position: Chr11:28120847..28120951 (- strand)
Length: 105
Type: CDS
Position: Chr11:28121021..28121103 (- strand)
Length: 83
Type: CDS
Position: Chr11:28121530..28121668 (- strand)
Length: 139
Type: CDS
Position: Chr11:28121955..28122020 (- strand)
Length: 66
Type: CDS
Position: Chr11:28122141..28122237 (- strand)
Length: 97
Type: CDS
Position: Chr11:28123078..28123204 (- strand)
Length: 127
Type: CDS
Position: Chr11:28123403..28123527 (- strand)
Length: 125
Type: CDS
Position: Chr11:28124558..28124627 (- strand)
Length: 70
Type: CDS
Position: Chr11:28124935..28125094 (- strand)
Length: 160
Type: CDS
Position: Chr11:28125095..28125296 (- strand)
Length: 202
Type: five_prime_UTR

>Vigan.11G168600.01 class=Sequence position=Chr11:28120262..28125296 (- strand)
GAAAGTCTTC TCATTTCCCC CTTGCAGTTT ACGTCTTCCA CTCTCTCTAT CATACCATAC CCATCTCACA TCCCTCTCTC
CCGTCAATCC ATCATTCCTA TTCCTTCTTC TTTCTCTTCG AATTCCAAAT CACACACTCC ATCTCTAGAG TTTTCTTTCT
CTTCTTCCTT CAAACCTTCT TTTTCCTCTC TTCTTTGCTC CCATGGCTTC CGATCTTGAA GCGAGAGCCA AAGAAGCCTT
TGTCGAAGAC CACTTCGAAC TCGCAGTGGA CCTTCTATCT CAGGCAATTA ACCTCGAACC CAACAAAGCT GAACTCTATG
CCGACCGCGC TCAAGGCAAC ATCAAATTGA ACAACTTAAC TGGTACACTC TCACTTCCTC CCTTCAAAAG TTTGTTTTTC
TCTTACCCTT TTGTCTATTC TGTGGGAATC ATTGAGTTTT TGTTACTCCT GTGTTCAATT GGGTCATGTG GGAGGAGATG
GGAGTTTGAC CAAGTTTTTA TCGATTAATG TCTGTTTTGT TGGTGTTGTT TTTTCATAAA AAAAAATTTG ACAAATCTTC
GTATAGTCTT TACTTGGGAT TGTGTTCATG GTTGTCTGCA CCCTGCAGAC ATGTGGTTTC AATGTTTTAC TAAGTTAGAA
TTTTGATTTG CTTTTCCTCT TTTGTGCAGA GGCTGTTGCT GATGCTAACA AAGCAATTGA ATTGAATCCT TCTCTGCCAA
AAGCATATCT ACGGAAAGGG TAAGTACAAC GCCACCTTGT CTTTAAATTT TTTCAAAAGG TTTGATTATT CATTTGTTCT
TATACCTGTA TTCTATTTGT TAGTCCCTGC AGTTAGAAAC CATTTGTTTT AGTTCCTACA AATATGCACC TTTTAATTCT
TTTTAGTCTC TGTTGGCCAA ATTTGTAGGA ACTGAAATAG ATTAATAAGT GTGTGTGTAA GGACTGAGAG AGTTAACAGT
GTATCTTCTA GTACTAAAAT AAGTAGTTCT TAGGTGCAGG ACTAAATTTC AAAACATTGA ACTCAACCAA ATGAGTAATC
AAACATTTTT TAATATATAG TATCCAGAAA TATTGTTACT TTTGGTAAGT GTTGTCAAAA GCAACCTCTT AAATAGAGAA
TGACTACTTA ATCAAATGGT GGTGTTCTAT TAGAGTAAAT GATAGATTCC TATTTATGAG GATAACAATA GGAAACAATG
CTAAATGGGC ATATAAGAGT GAAAGGTGGA GATTCAGTTG AGGAGACACA ATGATATAAG GTGGCACAAT ATCTACCCTC
TTAAATAGAG AATGACTACT TAATCAAATG GTGGTGTTCT ATTAGAGTAA ATGATAGATT CCTATTTATG AGGATAACAA
TAGGAAACAA TGCTAAATGG ACATATAAGA GTGAAAGGTG GAGATTCAGT TGAGGAGACA CAATGATATA AGGTGGCACA
ATATCTGTAT GCATAACCAC TTCAAAATTG GCAATGTATA CACAATGTAC ATATATCTGA TACTAGCATG CATATTATAT
AATTGTCTTC TTATTGAAAC ATGGCCTTAT ATTTAAACTA TTAATGTGAA TTTTTTATTG ACTAATGAAG AGATTATTAT
GCTTGAATAT ATAATTTATT TAAATTTAAA TATGACAGTA TTTTACGTGA TTTACATGAT GGTTAATGAC GACATCTGAG
GCTAAAGTTG ATTGAAATTG CATTCTGTGC ATCAGCAGAT CACATCCTAT TTTATGTTTT GACATTTAAA TTTATTGTTT
CAATTGCAGT ACTGCATGCT TGAAGCTTGA GGAGTATCAG ACGGCCAAGG CTGCTCTGGA GACTGGTGCT TCATTGTCTC
CAGACAACCC AAGATTTGTT AATTTAATCA AAGAGTGTGA TAAGCTCATT GCAGGTGAAC TTTGTTCTTT CTAATGGTAA
AATCCTTTTT ATTTAATTAA ACTTATTTGT CTTTGAGGTG TAATTTTCAT GTTTTAGATT TTGTTTTATG TCTGACTGAT
GACTGTTTCT TGACTGTTGG AAGTGAAAAT GTGGATTGAT GCCATTTTTG GCTAGGAAAC TGACTTGAAC TTGATGGACA
TGTGTTGAAC AGAAGAATCT TATACCACCA TACCTATACA GGAAAAGACC ATAGCGCAGG ATGATAATCC AAAAGATGTT
CAACAACAGG ATGATCTTCC AGAGAAGCCA CCAGTTGCTG TGAATAAACC TAAATATAGG TCAAACATGC TTTTACTTTA
TGGTTATGCA TATTCACTAG GACTATTTGT GTATATATTA ACAGTGCTTC AGCTGTTTTA GTTATTGTGA TTATGTTTTG
TATTTGATAT TTTTTGTCTT AAAAAGTAAC ACTCCCAAAT GCTTAATCTT TTAGATGAAG TTTATGAATA GTTCTGTCTA
TCATTTTCCA TTTTTTGGCT TTAGATGAAC AATGAATAAG CTCAGAGTTT TTTGCTGAAA TTTATCTTTT CATTAAAAGA
ATGGGGGAGA AAATATCTAA TTTTATACCA CTTTATTATG GACTTTGATG CTGTGTTTGA ACTAATTATC CCAAAAGTTA
AAGATTTGGG TAAAGTCAAA ATGAATGATT TTATTTTATT TTTTTATATT TAATGTCCTG GCACATATCT TCATTCAAGA
GACCTTTGGG CTTGAAGTAT GGCGCTACAC TGGCCACTGT TCCATCCTCC ATGTGCACAA ATTTAGCTTT ATGTTAGAAT
AGTAGAGATA AGGATCAAAG GCTAAACTGC TTGGTCATGG TGGATTATAG AGCCATTAAC CAACGATCCG AGAAGATTAC
ATTGTTCAAT TAAATATCAT GAATCATTTG ATATCTATCA ATTAACTTAT AGAGAGGATA TTCCCATAGT TTTTAATTTT
TTTAACAATT TTTAATTTAG TATCTGATAG GGAGAACTTG CAAGCAAGTC TGCAATGCTT AACGTTGTAT TGTTTGCTTG
TGATAATGTT CTACTATGTG AACTGGAATA TTTCTATTAA AGGAAGGAAC TAAATTAAAT TTCTCAGGCT TTGACTCTTT
GAAAACAAAA TTTATGCAGG CATGAATTCT ACCAGAAACC TGATCAGGTG GTTGTAACCA TATTTGCAAA GAAAATCCCC
AAGGAAAGCA TAACTGTTGA ATTTGGCGAA CAAATAGTAT GGTTCACATC ATACAATATT TATTAAATGC TTTTTTATCT
AGCCTTTGGT GCACTTGTAT TCATTTTGGT GAATCACATT CTAATCTTAG TCCCTCCTTA TTTTTTTCTT TTGTAGCTAA
GTGTTAGTAT TAATGTCCCA GGGGAAGATG CATATGTTTT TCAAACTCGC TTATTTGGAA AGGTATGAAC AAGACCTGTT
TGTCAGCATA AAAGATTGGA TCACTGGGAA AATGTATCTT ACAGTCTTTT ATACGTGCAT AGTGTAGTTT TGGTTTTTTC
CTAGTGTGGT TGATACTGAA GATAGTTTAA GCTTTGGTTA TCTCGTCCTA TTTTTATTTT TTTGGCTGGT CTCAAGCACC
TTTATTTCCA TAGTTGCATT TAAACTCCTT TGTATGGTTT ATATTATTAG TGCTTTTTGT TATTTTGTAC TGTGTATACT
GTGTTGAACT TTGGTTTTCC TCTATCAGAT TGTACCCTCC AATTGCCGGT ATGATGTATT ATCAACCAAA ATTGAAATTC
GCCTTGAGAA AGCGGAACCT ATTCATTGGT CATCTCTTGA ATTCACCAAA AACGTTGTAG TTCCACAGAT GGTTAATGCC
TCTTCAGGTA ACTTGACACT TATTTGGATT TTGGAGTTTC CTTCCTCTCT TGTTTGGTGA CTTTGGTATA ATGGTTTCCT
TTTTCTTCAT GTGGTGACTT TGGTATAATG GGTCCTATGT GATGGATGTG TAGAGACCAT AAACATGGGA CTATAATTAG
TCAAGTGAAG GGTGGGAAGG TGTACTGTTT TTAAGGAAGG GATAGATTAG AAATTGCACA AGTTAAGGAG AGGAAAAGTT
GGGAATTTAA TGAATTAAAG AACGAAAATG TAAAACTAGA AGTCACTGAA AAAGGGTGGA GATTTTATCT TAGCAGGAAC
ATAAACCGTT TTACTAGAGG CTAATATTCT AGCTACAATA CTGGTGAACA TTTGCATGGC AAGGTCCAGT TTTTCATGCT
AAAATGCTTT ATCCCTTTTC GTGAATTTTG CAGTTACTGC AAGTCATAGA CCTTCTTACC CGTCCTCAAA ACAAACCAGA
GATTGGGACA AGATCGAAGC TCAAGTCAAG AAAGAGGTTT GTAAATGTGT TAACTGTTTG TATTTTAGTG AGTGCAAATC
TTGCTCCTAA CATTCTTCAT TTCAGGAGAA AGATGAAAAG CTCGACGGGG ATGCTGCATT GAACAAATTT TTCCGGGAAA
TATACCAAGA TGCAGATGAG GATACCAGAA GAGCAATGAA AAAGTCATTT GTGAGTTTTA CATTCTTCAT CTATCAAATT
CTGCTCATTA CATAGGCCAA ACTTTTAAAT CCTCTTTATT CAGGGCATGT CTAGTGAATC ACAATCACAA CTATTATTTA
GAGAATGGCA GCAAATTGTG TTCAGTGCAT GTTGGTGTAT TCATTGCACC TTACCTCTCT TCAATTTTAT TATATAGGTG
GAGTCTAATG GAACTGTGCT GTCTACAAAC TGGAAAGAAG TGGGATCAAA GAAGGTGGAG GGAAGTCCTC CTGATGGCAT
GGAGTTGAAA AAATGGGAAT ATTAAGATAC TTTCTGAATC AATGTTTATA TATAATTTGG TGTGGGATTA TGCTTTTAAT
GCTTTCTGTT GGTTAGTTAA CTGCTGAACT AGAGATCTTA TTTTATTCGA ATTTTTTTTT CATAAGGTTT GTCCGTCTTC
GCTTGGACCT GAATTCATGG TTGTTGGTTG AGGACAAGGC TGTTCATATT TGGTTAATAT AATGCAACTT TCTGGTTTAT
CTTCCCTTGA GTCATTCTTT ATATTAATAC AGCTGAACCA ATGTTAGTGG AAGATGGACC ATAATTGTTG AAGGA

>Vigan.11G168600.01
GAAAGTCTTC TCATTTCCCC CTTGCAGTTT ACGTCTTCCA CTCTCTCTAT CATACCATAC CCATCTCACA TCCCTCTCTC
CCGTCAATCC ATCATTCCTA TTCCTTCTTC TTTCTCTTCG AATTCCAAAT CACACACTCC ATCTCTAGAG TTTTCTTTCT
CTTCTTCCTT CAAACCTTCT TTTTCCTCTC TTCTTTGCTC CCATGGCTTC CGATCTTGAA GCGAGAGCCA AAGAAGCCTT
TGTCGAAGAC CACTTCGAAC TCGCAGTGGA CCTTCTATCT CAGGCAATTA ACCTCGAACC CAACAAAGCT GAACTCTATG
CCGACCGCGC TCAAGGCAAC ATCAAATTGA ACAACTTAAC TGAGGCTGTT GCTGATGCTA ACAAAGCAAT TGAATTGAAT
CCTTCTCTGC CAAAAGCATA TCTACGGAAA GGTACTGCAT GCTTGAAGCT TGAGGAGTAT CAGACGGCCA AGGCTGCTCT
GGAGACTGGT GCTTCATTGT CTCCAGACAA CCCAAGATTT GTTAATTTAA TCAAAGAGTG TGATAAGCTC ATTGCAGAAG
AATCTTATAC CACCATACCT ATACAGGAAA AGACCATAGC GCAGGATGAT AATCCAAAAG ATGTTCAACA ACAGGATGAT
CTTCCAGAGA AGCCACCAGT TGCTGTGAAT AAACCTAAAT ATAGGCATGA ATTCTACCAG AAACCTGATC AGGTGGTTGT
AACCATATTT GCAAAGAAAA TCCCCAAGGA AAGCATAACT GTTGAATTTG GCGAACAAAT ACTAAGTGTT AGTATTAATG
TCCCAGGGGA AGATGCATAT GTTTTTCAAA CTCGCTTATT TGGAAAGATT GTACCCTCCA ATTGCCGGTA TGATGTATTA
TCAACCAAAA TTGAAATTCG CCTTGAGAAA GCGGAACCTA TTCATTGGTC ATCTCTTGAA TTCACCAAAA ACGTTGTAGT
TCCACAGATG GTTAATGCCT CTTCAGTTAC TGCAAGTCAT AGACCTTCTT ACCCGTCCTC AAAACAAACC AGAGATTGGG
ACAAGATCGA AGCTCAAGTC AAGAAAGAGG AGAAAGATGA AAAGCTCGAC GGGGATGCTG CATTGAACAA ATTTTTCCGG
GAAATATACC AAGATGCAGA TGAGGATACC AGAAGAGCAA TGAAAAAGTC ATTTGTGGAG TCTAATGGAA CTGTGCTGTC
TACAAACTGG AAAGAAGTGG GATCAAAGAA GGTGGAGGGA AGTCCTCCTG ATGGCATGGA GTTGAAAAAA TGGGAATATT
AAGATACTTT CTGAATCAAT GTTTATATAT AATTTGGTGT GGGATTATGC TTTTAATGCT TTCTGTTGGT TAGTTAACTG
CTGAACTAGA GATCTTATTT TATTCGAATT TTTTTTTCAT AAGGTTTGTC CGTCTTCGCT TGGACCTGAA TTCATGGTTG
TTGGTTGAGG ACAAGGCTGT TCATATTTGG TTAATATAAT GCAACTTTCT GGTTTATCTT CCCTTGAGTC ATTCTTTATA
TTAATACAGC TGAACCAATG TTAGTGGAAG ATGGACCATA ATTGTTGAAG GA

>Vigan.11G168600.01
ATGGCTTCCG ATCTTGAAGC GAGAGCCAAA GAAGCCTTTG TCGAAGACCA CTTCGAACTC GCAGTGGACC TTCTATCTCA
GGCAATTAAC CTCGAACCCA ACAAAGCTGA ACTCTATGCC GACCGCGCTC AAGGCAACAT CAAATTGAAC AACTTAACTG
AGGCTGTTGC TGATGCTAAC AAAGCAATTG AATTGAATCC TTCTCTGCCA AAAGCATATC TACGGAAAGG TACTGCATGC
TTGAAGCTTG AGGAGTATCA GACGGCCAAG GCTGCTCTGG AGACTGGTGC TTCATTGTCT CCAGACAACC CAAGATTTGT
TAATTTAATC AAAGAGTGTG ATAAGCTCAT TGCAGAAGAA TCTTATACCA CCATACCTAT ACAGGAAAAG ACCATAGCGC
AGGATGATAA TCCAAAAGAT GTTCAACAAC AGGATGATCT TCCAGAGAAG CCACCAGTTG CTGTGAATAA ACCTAAATAT
AGGCATGAAT TCTACCAGAA ACCTGATCAG GTGGTTGTAA CCATATTTGC AAAGAAAATC CCCAAGGAAA GCATAACTGT
TGAATTTGGC GAACAAATAC TAAGTGTTAG TATTAATGTC CCAGGGGAAG ATGCATATGT TTTTCAAACT CGCTTATTTG
GAAAGATTGT ACCCTCCAAT TGCCGGTATG ATGTATTATC AACCAAAATT GAAATTCGCC TTGAGAAAGC GGAACCTATT
CATTGGTCAT CTCTTGAATT CACCAAAAAC GTTGTAGTTC CACAGATGGT TAATGCCTCT TCAGTTACTG CAAGTCATAG
ACCTTCTTAC CCGTCCTCAA AACAAACCAG AGATTGGGAC AAGATCGAAG CTCAAGTCAA GAAAGAGGAG AAAGATGAAA
AGCTCGACGG GGATGCTGCA TTGAACAAAT TTTTCCGGGA AATATACCAA GATGCAGATG AGGATACCAG AAGAGCAATG
AAAAAGTCAT TTGTGGAGTC TAATGGAACT GTGCTGTCTA CAAACTGGAA AGAAGTGGGA TCAAAGAAGG TGGAGGGAAG
TCCTCCTGAT GGCATGGAGT TGAAAAAATG GGAATATTAA 

>Vigan.11G168600.01
MASDLEARAK EAFVEDHFEL AVDLLSQAIN LEPNKAELYA DRAQGNIKLN NLTEAVADAN KAIELNPSLP KAYLRKGTAC
LKLEEYQTAK AALETGASLS PDNPRFVNLI KECDKLIAEE SYTTIPIQEK TIAQDDNPKD VQQQDDLPEK PPVAVNKPKY
RHEFYQKPDQ VVVTIFAKKI PKESITVEFG EQILSVSINV PGEDAYVFQT RLFGKIVPSN CRYDVLSTKI EIRLEKAEPI
HWSSLEFTKN VVVPQMVNAS SVTASHRPSY PSSKQTRDWD KIEAQVKKEE KDEKLDGDAA LNKFFREIYQ DADEDTRRAM
KKSFVESNGT VLSTNWKEVG SKKVEGSPPD GMELKKWEY*