GBrowse Details

Vigan.11G146700.01

Basic Information:
Name: Vigan.11G146700.01
Multiple alignment
Variant Information
Position: Chr11:23858680..23861684 (+ strand)
Length: 3005
Functional Information:
Description: Similar to Uncharacterized protein. [I3SU67, Lotus japonicus]
InterPro: Ribonucleoprotein LSM domain (IPR001163)
Ribonucleoprotein LSM domain, eukaryotic/archaea-type (IPR006649)
Like-Sm (LSM) domain (IPR010920)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.25,29.27,36.39,49.18,54.19,74.41,68.64,33.10
Arabidopsis thaliana homolog: AT1G76860.1
Automatic updates:
Name: NM_001249032 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499782 (LOC100499782), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249628 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306547 (LOC100306547), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:23858680..23858749 (+ strand)
Length: 70
Type: five_prime_UTR
Position: Chr11:23858750..23858866 (+ strand)
Length: 117
Type: CDS
Position: Chr11:23860487..23860582 (+ strand)
Length: 96
Type: CDS
Position: Chr11:23861127..23861207 (+ strand)
Length: 81
Type: CDS
Position: Chr11:23861208..23861684 (+ strand)
Length: 477
Type: three_prime_UTR

>Vigan.11G146700.01 class=Sequence position=Chr11:23858680..23861684 (+ strand)
ATTGACTCAA AAGGGTTACA CGAAAAAACT TACCTCCAAA ATCAGAAGAC TGAAACTAGT GAAGTGACTG ATGGCTACAG
AGGAAGAGAG TGCGGTGAAG GAGCCTTTGG ATCTCATTAG GCTCAGCCTT GACGAACGTA TCTACGTTAA GCTCCGTTCT
GACAGAGAGC TTCGTGGAAA ACTTCACGTA ATTTTCAGTC TTTTTTCTCC TTTTCATCAA TTTCTGTTTT TTTTCAACTT
CCGCACTCTT TTTTTTGTGG TTACCCATTA ATGTACAGAC TGTATTAGGT TTTCTTAGAC GTGAAATTTA TGATTTTTAA
GGTGTTTTCA AGGTAATTGA AATCTGGTTC GCTTGCAATT AATGGCAAAT TTGTGCCTTT CTGACTGCCC TAACGTAGTA
ATGGGTTGTT TAGTACTTTC CTGTGGGGAT TGAGTTGAAT CTTTGATTTT CCAATTTTGG GTTTTGGAAG GAATTGTTGT
TGGTCGCTGA ACGGAAATTT TAGTGTTTTT AACTAGAATT TAAAATAAAC TAGTTTGGGA TGAGGGATGA TAAGTATGTA
TTGTTAGGTT TTAATATTTG TTTAATTCTT TGTTGGCTAA GGACTTCATG CAACCGGTTG AAGATTAGGT TATAGTAGTA
TGAACCGTTT GGGATTTCTA AGCCCTTTAT GCGGACAGGA TTTAAATGGC TGGATGAGAG TAACATATTG AAATGATTAT
GTTGTTTTTG AAGGTTCTTT TAGTGCTTTA ACTAAGTGAT TTTTTTGGAG GGGGGTTGGT TGGTGTTTTT TATGCGTTTA
TTTATTTACT CTTCCTGAAT TCCTATAAGA TTACAATGAG TTTGTTAATT AATTTACCGA ATAGTTCCTA TTTGTAAGTT
GAAACTAAGC TGTGTTTACA ATGAATTTTA TGAATTACAC GTGGTTGTCG TTGGTCTTTC TTCTTCATTT GATAGAGTAT
AAATATGAGA AATATCTTAA CTACATAGGT TTCAGATTTC AGTTTGTTAT GAAATGGGTG ATAACTGGTG AGGTGAGCTT
TCAGCACGAA ACCTGAAAAT CAGAGATACA TAAACTTGTG ATGTGCTTAA TAGTTTGAGT CCAATAATTT GATACTGCTT
GTAAAATTGC TGAACTGGAA CTCTGGAAGC AACCTCTGTA TCTCCCCAGT GGCATCTCTT GTCTGACTTG TAACTGAATG
AAACTACTAT GTCTAATCTA ATTAATGGTG TAATTTACTT AGTTAGTTAC ATAACTACAC CTATTAATCT TTCAAATTTG
ATCTCTAATA GTTATTTTGC TTCTCCTTAT CTTCTGTGCA AATCGTATTG GTAATTTGAA GTAGTGAGTT ACCTGATGGA
TAAAATATTT TTAAATGACA CACAGAAGTT AAAATGAGAC ATTATGAGTT TGGAGTCTCT GTGTTGCTTT TTTAAAGGGT
CTTAACATGG ATTAAATTTG GATCTGATTA GTGCTTAAGA TATGCTTCCC CTAAAATTTG TTTAAGGATT CATATTTAGT
ACACAGGAAA GACTTGTATT TCTTTCTCAT TTATTTATTT ACTGCCACGG AGTCAAATAA TCTGTTGTCA TGACATAACT
AGGGTTAATG GAATCTATTT GATCTGTATC TAGTCTAAAA TTATTAAACT TTTATTTCCA ATTAAAAAAG TAACATACAG
AAAATATGAA TTGCTTTATA TTTAGGTTGC CTAAGCAAAA TTTTGTATGG GGAGAATCGT TTTAGAACTA TTTTATCTGC
CTCCTTCTAT TTCTCAATTT GTACGGGTTT TCAATTTGGA ATTGCAGGCT TACGATCAAC ATCTTAATAT GATTCTTGGT
GATGTTGAAG AGATTGTTAC TACTGTGGAA ATTGATGACG AGACATATGA AGAAATTGTG AGGGTAAGTT ATAATCAGCA
AAAAAGGAAA AATACATGTA TATTGTATTT TGGCAAAGCT AAGTGGTAGA ACTATGATTA ATTGATAGAA AATTTGTGAG
GTTAACAAAA AACATTGTTG AATGGACTAA GATATGGTAA AAGAAAGTGT TCATCAGTGA TTAATGTATA GTGAAGCTAG
ACACTTCTGG TTCTGGGTAT TTTTCAAATG AGACTATAGG CATTATGCTT TCCCGCTACT GACCTTATTA TTTCACAACT
TGGATGCTAA CATATGAGCA GAGCTATTTA TTTGACTGAC TTTCTACTGG GAAAAGAAAA AGTTTGTCTT TTATAAACTG
TAATGCATTA TGGAGAGCCA AAGAGGAACC ATCTTTGAGA TTTTGTTCAT ATGTAGGGAA TGCCAAATGC ATATATTTAC
GAACTTCAAT CTGCTTCAAT CTGCTTCAAC CTTCAAATTG CTTCTGTCAA ACTAAAGGCA AATGCATGCT ACAATATTTC
TACGATAAAT TTCTTTGGAT GATCATTTGT TTTCTTTCTG ATTGCAGACT ACTAAGCGGA CGGTTCCTTT CCTGTTTGTT
AGGGGAGATG GGGTGATATT GGTTTCCCCG CCCTTGAGGA CTGCATAACA TGAACCCATG ATGAACAATG TGATCATTTG
AATAACAAGT GTCACTGTTT ATGAAATTGT ACAACTTAAG TAGTGATCTC CTTATGATTA GATTAGCTAC TTAATTGGCT
TGTGTGCTAG AGATTTATGT TAGACAGTCA ATTTTCAATC ATCTTTATAG CTTAAAAGAA TCATGGCATG CACATGTAAA
CAAGGATTTT TTCTGTTGTG TGGAGCTGCC ATTATATCAC TGACTCCATG AAAAGTGTAG GCCATGGTTC TTGATTTGAT
ATCTCTTCTT CATGTCCTTG TTTATTTTTC GTTACAGTAG AAGATATTAG AACTGGGATG ATATTCCAGT TTGGTGCATC
TAATTATGAA GTTTTCCAAA CATTTCTTTA GTTAAAGTGA AACTTTTTTT CCAAAGAAAA AATTGAGATA ATTTTCCATT
CATGATTTGA AGGATACAGG TAGGCTATTA TAGTTCAAAG CACGG

>Vigan.11G146700.01
ATTGACTCAA AAGGGTTACA CGAAAAAACT TACCTCCAAA ATCAGAAGAC TGAAACTAGT GAAGTGACTG ATGGCTACAG
AGGAAGAGAG TGCGGTGAAG GAGCCTTTGG ATCTCATTAG GCTCAGCCTT GACGAACGTA TCTACGTTAA GCTCCGTTCT
GACAGAGAGC TTCGTGGAAA ACTTCACGCT TACGATCAAC ATCTTAATAT GATTCTTGGT GATGTTGAAG AGATTGTTAC
TACTGTGGAA ATTGATGACG AGACATATGA AGAAATTGTG AGGACTACTA AGCGGACGGT TCCTTTCCTG TTTGTTAGGG
GAGATGGGGT GATATTGGTT TCCCCGCCCT TGAGGACTGC ATAACATGAA CCCATGATGA ACAATGTGAT CATTTGAATA
ACAAGTGTCA CTGTTTATGA AATTGTACAA CTTAAGTAGT GATCTCCTTA TGATTAGATT AGCTACTTAA TTGGCTTGTG
TGCTAGAGAT TTATGTTAGA CAGTCAATTT TCAATCATCT TTATAGCTTA AAAGAATCAT GGCATGCACA TGTAAACAAG
GATTTTTTCT GTTGTGTGGA GCTGCCATTA TATCACTGAC TCCATGAAAA GTGTAGGCCA TGGTTCTTGA TTTGATATCT
CTTCTTCATG TCCTTGTTTA TTTTTCGTTA CAGTAGAAGA TATTAGAACT GGGATGATAT TCCAGTTTGG TGCATCTAAT
TATGAAGTTT TCCAAACATT TCTTTAGTTA AAGTGAAACT TTTTTTCCAA AGAAAAAATT GAGATAATTT TCCATTCATG
ATTTGAAGGA TACAGGTAGG CTATTATAGT TCAAAGCACG G

>Vigan.11G146700.01
ATGGCTACAG AGGAAGAGAG TGCGGTGAAG GAGCCTTTGG ATCTCATTAG GCTCAGCCTT GACGAACGTA TCTACGTTAA
GCTCCGTTCT GACAGAGAGC TTCGTGGAAA ACTTCACGCT TACGATCAAC ATCTTAATAT GATTCTTGGT GATGTTGAAG
AGATTGTTAC TACTGTGGAA ATTGATGACG AGACATATGA AGAAATTGTG AGGACTACTA AGCGGACGGT TCCTTTCCTG
TTTGTTAGGG GAGATGGGGT GATATTGGTT TCCCCGCCCT TGAGGACTGC ATAA

>Vigan.11G146700.01
MATEEESAVK EPLDLIRLSL DERIYVKLRS DRELRGKLHA YDQHLNMILG DVEEIVTTVE IDDETYEEIV RTTKRTVPFL
FVRGDGVILV SPPLRTA*