GBrowse Details

Vigan.11G143700.01

Basic Information:
Name: Vigan.11G143700.01
Multiple alignment
Variant Information
Position: Chr11:22923990..22925730 (- strand)
Length: 1741
Functional Information:
Description: Similar to Uncharacterized protein. [I1JDE1, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
Cellular Component: cytoplasm (GO:0005737)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627)
InterPro: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (IPR001104)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:452.97,42.54,4.39,0.20,6.31,22.12,226.45,6.04
Automatic updates:
Name: NM_001289370 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max steroid 5-alpha-reductase DET2-like (LOC100797930), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:22923990..22924073 (- strand)
Length: 84
Type: three_prime_UTR
Position: Chr11:22924074..22924544 (- strand)
Length: 471
Type: CDS
Position: Chr11:22925217..22925543 (- strand)
Length: 327
Type: CDS
Position: Chr11:22925544..22925730 (- strand)
Length: 187
Type: five_prime_UTR

>Vigan.11G143700.01 class=Sequence position=Chr11:22923990..22925730 (- strand)
TACCAATCTT TATTCCATTC ATGATTATGT TTTGCTTTAA TCACAAATAC AATAGATGTG GATCTCACTG TAATTATTGC
AACACAACAT GTAACTATAT AAGTGAACCA TGAAACATTT TCTTTAGCTG AGTCCGAGAA ACAAAAACAA GGTCTGAAGA
GAGGGTATAG AATTAGCATA CGCCACCATG GTGATGTCTG TTTTGTCGAG CTTCATTTTC CCACCGCCAT CTTCTCTGGT
GGTTTCAGGG TTGACGGTGA TAAGCTTCCT GATACTTGTG ACTTCTTTCC TGTCAGAAAT TAGAGGGAAG CATTTGAACT
ATTCTAAGTT TTGGAATGCT AATCCCTCTG CACAAAAGCA GATCAAGTTG CCAAGTAAAG CTGGCATGCT TCTCTTGTAC
ACTCCTGCTT TCCTTGCTGG CCTTGCATCC TTCTGGATCT TTCCTCCTCA AAGTTTGAGG TCCATCATCC TTCAATCTGC
TGTTACTTTC CATTTCTTCA AGAGGGTCTT TGAGGTAACA CTTTCTTTCT TCTACCATGC ATAAAAACAA TAATATAAGG
TTTGAAGTTT AGAATGATCT TAGAAATTCA AGAACAAGTT TAAATCTCAT ATCGAGTAAA GATGAAAAAG TTAAATTCTT
TAGATTGAAA ACATCTCAAT CTATTATTTT AAGATTTTCT GTCAATTTTT TACGTTGATT GGATTCAAAT TTTATCGGTA
TTATATCTTT CTAACGAGTT ATCTGAAAAG ATTTATCTAA GTACCACAGC TGGTAGTTCG TCTTGGTGCT TAGTAATAAT
CAAGATCTAT AAATTATTGT TTTAAGATTT TGAATTAAAG ACTAAAATTA GCTTAACAAA CAACTGTCAA GATAAACTAT
AGATTCTAAC ACCATATTAG ATTCCAATTC AAAACCAATA GAAATCAATA AACAGATGTT TATTCCCTTT CTCTTTTATT
TCATTTTCAT TGTGTTTTCT GTCTGTATTA CTTCTGTATG ATATCATTCA TTATCAAAAA CGTAATTGTC TCAATCTATA
TCATTTTCTC TTTTCCAACT TTGACTTTTT ATCAATCAAT CCAGCATAAT CTATATCATT TTATCTTGCA ACAATTAATT
GATTGGATCA CAAACTTGTT CTTTTACTGG ATTTCAGCTG AAGTAAGAAT GTTTGTTGAT GTGTAGGTTC TGTTTATTCA
CAAATATAGT GGAGGCATGA CTCTTGAATC TGCAATCCCC ATCACTCTCA GTTATTTCCT ATCAGCAGCA ACCATGACCT
ATGCTCAACA CCTTACAAAT GGCCTTCCAG AGCCACCAAT GAATCTATTG TATCCTGGCA TTGTGGTTTT TGTGATAGCC
ATCATTGGCA ACTTCTACCA CCACTACCTT CTATCCAACT TGAGGGGAGA GGGTGAAAAG GAGTACAAGA TTCCAAAGGG
TGGCCTTTTT GGGCTTGTGA TCTGCCCCCA TTACCTCTTT GAGATCACTG TGTTTTATGG AATCTTCTTC ATTTCTCAGA
CACTATATGC ATTCTCTTTC GCTATAGGCA CTAATTTGTA CTTGCTGGGT AGGAGTTACT CCACTAGGAA ATGGTATGTT
TCCAAGTTTG AAGATTTTCC TAAGAGTGTT AAGGCTGTCA TACCCTTTGT CTTCTAAATG TTGCAATCAA CATATAATTT
TACTTATGTG TGTTTTGATG AAGATTGGAT AAAGCAGATT ATTAATAAAA CTGGTTTTGA T

>Vigan.11G143700.01
TACCAATCTT TATTCCATTC ATGATTATGT TTTGCTTTAA TCACAAATAC AATAGATGTG GATCTCACTG TAATTATTGC
AACACAACAT GTAACTATAT AAGTGAACCA TGAAACATTT TCTTTAGCTG AGTCCGAGAA ACAAAAACAA GGTCTGAAGA
GAGGGTATAG AATTAGCATA CGCCACCATG GTGATGTCTG TTTTGTCGAG CTTCATTTTC CCACCGCCAT CTTCTCTGGT
GGTTTCAGGG TTGACGGTGA TAAGCTTCCT GATACTTGTG ACTTCTTTCC TGTCAGAAAT TAGAGGGAAG CATTTGAACT
ATTCTAAGTT TTGGAATGCT AATCCCTCTG CACAAAAGCA GATCAAGTTG CCAAGTAAAG CTGGCATGCT TCTCTTGTAC
ACTCCTGCTT TCCTTGCTGG CCTTGCATCC TTCTGGATCT TTCCTCCTCA AAGTTTGAGG TCCATCATCC TTCAATCTGC
TGTTACTTTC CATTTCTTCA AGAGGGTCTT TGAGGTTCTG TTTATTCACA AATATAGTGG AGGCATGACT CTTGAATCTG
CAATCCCCAT CACTCTCAGT TATTTCCTAT CAGCAGCAAC CATGACCTAT GCTCAACACC TTACAAATGG CCTTCCAGAG
CCACCAATGA ATCTATTGTA TCCTGGCATT GTGGTTTTTG TGATAGCCAT CATTGGCAAC TTCTACCACC ACTACCTTCT
ATCCAACTTG AGGGGAGAGG GTGAAAAGGA GTACAAGATT CCAAAGGGTG GCCTTTTTGG GCTTGTGATC TGCCCCCATT
ACCTCTTTGA GATCACTGTG TTTTATGGAA TCTTCTTCAT TTCTCAGACA CTATATGCAT TCTCTTTCGC TATAGGCACT
AATTTGTACT TGCTGGGTAG GAGTTACTCC ACTAGGAAAT GGTATGTTTC CAAGTTTGAA GATTTTCCTA AGAGTGTTAA
GGCTGTCATA CCCTTTGTCT TCTAAATGTT GCAATCAACA TATAATTTTA CTTATGTGTG TTTTGATGAA GATTGGATAA
AGCAGATTAT TAATAAAACT GGTTTTGAT

>Vigan.11G143700.01
ATGGTGATGT CTGTTTTGTC GAGCTTCATT TTCCCACCGC CATCTTCTCT GGTGGTTTCA GGGTTGACGG TGATAAGCTT
CCTGATACTT GTGACTTCTT TCCTGTCAGA AATTAGAGGG AAGCATTTGA ACTATTCTAA GTTTTGGAAT GCTAATCCCT
CTGCACAAAA GCAGATCAAG TTGCCAAGTA AAGCTGGCAT GCTTCTCTTG TACACTCCTG CTTTCCTTGC TGGCCTTGCA
TCCTTCTGGA TCTTTCCTCC TCAAAGTTTG AGGTCCATCA TCCTTCAATC TGCTGTTACT TTCCATTTCT TCAAGAGGGT
CTTTGAGGTT CTGTTTATTC ACAAATATAG TGGAGGCATG ACTCTTGAAT CTGCAATCCC CATCACTCTC AGTTATTTCC
TATCAGCAGC AACCATGACC TATGCTCAAC ACCTTACAAA TGGCCTTCCA GAGCCACCAA TGAATCTATT GTATCCTGGC
ATTGTGGTTT TTGTGATAGC CATCATTGGC AACTTCTACC ACCACTACCT TCTATCCAAC TTGAGGGGAG AGGGTGAAAA
GGAGTACAAG ATTCCAAAGG GTGGCCTTTT TGGGCTTGTG ATCTGCCCCC ATTACCTCTT TGAGATCACT GTGTTTTATG
GAATCTTCTT CATTTCTCAG ACACTATATG CATTCTCTTT CGCTATAGGC ACTAATTTGT ACTTGCTGGG TAGGAGTTAC
TCCACTAGGA AATGGTATGT TTCCAAGTTT GAAGATTTTC CTAAGAGTGT TAAGGCTGTC ATACCCTTTG TCTTCTAA

>Vigan.11G143700.01
MVMSVLSSFI FPPPSSLVVS GLTVISFLIL VTSFLSEIRG KHLNYSKFWN ANPSAQKQIK LPSKAGMLLL YTPAFLAGLA
SFWIFPPQSL RSIILQSAVT FHFFKRVFEV LFIHKYSGGM TLESAIPITL SYFLSAATMT YAQHLTNGLP EPPMNLLYPG
IVVFVIAIIG NFYHHYLLSN LRGEGEKEYK IPKGGLFGLV ICPHYLFEIT VFYGIFFISQ TLYAFSFAIG TNLYLLGRSY
STRKWYVSKF EDFPKSVKAV IPFVF*