GBrowse Details

Vigan.11G142000.01

Basic Information:
Name: Vigan.11G142000.01
Multiple alignment
Variant Information
Position: Chr11:22548522..22550601 (- strand)
Length: 2080
Functional Information:
Description: Similar to Uncharacterized protein. [I1JDC2, Glycine max]
InterPro: Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.30,5.58,57.55,1.16,2.84,1.90,9.73
Automatic updates:
Name: NM_001250185 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527001 (LOC100527001), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:22548522..22549068 (- strand)
Length: 547
Type: three_prime_UTR
Position: Chr11:22549069..22549183 (- strand)
Length: 115
Type: CDS
Position: Chr11:22549863..22550305 (- strand)
Length: 443
Type: CDS
Position: Chr11:22550306..22550601 (- strand)
Length: 296
Type: five_prime_UTR

>Vigan.11G142000.01 class=Sequence position=Chr11:22548522..22550601 (- strand)
CAAAATCAGA CAAAATTCAG TGGTTGATGA TGCCAGATGA CTGACCCTGA TGAAGTAAAA AACGACATTC TTGGTCAGCT
TTTAGTGGTT AAGACACTTA CAACTCCACT CACTTTGAGC CTCTTTCTCT TGGAAACTTG GTCACACCTT ATCCACACAC
ATCTTCTCTG ATTCTGATAA GATACCACAA AGTACAACCC AATAGAAGAA AATGGCTAAT CCAGAATATA ATAAGGTAAA
AATCTTTGCA CAGTTAGTTA GCATCAAGAG AAAGAAAAAA CAAAAATAAA CAAAAAATGT CTCTGGCATC TTCAATCCCA
TGCATCAAAA TCCCAACTTG TTCCTCTTCT CCATCATGTT CTTCCTCAAC TTCATCCTAT TCTTTCAGGT TTTCTTCTTC
CAAGCCTCAC AGTGTCACTA TAAGGAGCTC TCAGGCTGAA GGGCCTGTGA GAAGGCCAGT GGCACCCCAG ATAAGAGAAC
CATCATCAAC AAGTGTTCCT CCTCAGCTTC AGAAGCCAGC ACTTCCTTCT CAGACTCCTC CATCACCCCC TTCAGTGGTG
CCTCCACCAC AGAAGCCTGC TAGTTCTGTT GTTGGGGATG GTAAGAATGT CATTACATTA GAGTTTCAGA GGCAAATGGC
TAAGGAGTTG CAGGAATACT TCAAACAGAA GAAGCTTGAA GAAGCAAATC AGGGTCCTTT CTTTGGTTTC ATAGGGAAAA
ATGAGATTAA CAATGGAAGG TAATTGCTCT GCTATTGCCA CAGAATAAAA TTGGATCTTT TCTATATGTG GGGTTTATGT
TAATTGCATT TTCTTTATGG CACAATTGGT TAATTGTTAC CATCTAATTG GTTTATTGCT TCCTTTTTTA TTAATGTGTT
CTTCTGTTCA TCAAATTCAA GAGGGTTTGC TCAAAATGTT TTCTTTCTTT TTATCTTGGC CTAATTTAAT TACCAAAAAA
TTAAATTTTG AGGATACCCA ATAGGCGTAA TTCAGGGTAT GCAATTCATT GTTCTGCAAA AGCTTCACAG TTCTTTGCAA
TGGAAACAGA AACACTTACA TTTTCAGATG CCGAAGTTTA CAATTTTCTC CTTACAGTTT TTCCTTTTAT ATAAATTGTG
AGAAGATTCA CAACTGGTAA GATGATTAAA GATTCCTATC ACAATCTATT GGAAACATAA AGTTTTATGC AGATAGTAGT
TTTTTTGTGT CAAGCTGAAA ACAAATAGAT GCAATTAGCT TGTCTGCATT CATGATTAGT TGAAATCTTA GATATTAGAT
TCAAAGCATC ATCTCAGCTA CTTGTGTTTA ATACTTGTCA TTCTATTTAT GAATACCTGT CACACTTAAA TTGTATCAGC
ATTGTTATGC AAGTTCTGTT GTATTTTAAC TTACTAATCA GAAATTTCAT TTGTACAGAT GGGCAATGTT TGGTTTTGCA
GTAGGATTGC TTACAGAGTA TGCAACAGGC TCAGACTTTG TTGATCAAAT AAAGATCCTT CTCTCGAATT TTGGGATAGT
AGATTTGGAA TGAATGAATA CCTCAATATG AAATACTGTC AATACTTTCT TGTTCCTGTC GCTGGTGTAA ACTATGTTGA
GTAATTTGTT TTGTAATTCA TTTGTACAAA ACAAGCTTTC TCTTCATATT GATGAATCTC AAGAATTTGA TGTTCCTTTT
CCCATTATGC TGGACTCCCT AGAGATCGAA AAATTTAAAG AGCATTGCAG TTTTATAGTG ACACTGATAC TGATAGAATA
TGTAAGGTTG TGATAGATTA CATGGTAACT AATCAGCTAT TCTCTTGAGG AATAGCTTGG AAAGGTAGTC GGTTTTACCA
GCTTGAAACC TGTGTTGAAA ATATGTCTAA TATCAGAAGT TTGAAGTGGA TAATTTCCTA TGAATTGTCA TTGTCACAAC
TCTGATAATA TGTTGTTTTG TAAAGTGACA TTGTGAAACG TTTCTATCTC GTTTTATTGG AAATATAAAG TTTTTGTTTA
TTTTTCTTAT AAGATTGAGA TGACTTCTTG TGAGACTATC AAGTTTCCAA TGAGATTTTC TTCCTCCTTT TCCACCAACC

>Vigan.11G142000.01
CAAAATCAGA CAAAATTCAG TGGTTGATGA TGCCAGATGA CTGACCCTGA TGAAGTAAAA AACGACATTC TTGGTCAGCT
TTTAGTGGTT AAGACACTTA CAACTCCACT CACTTTGAGC CTCTTTCTCT TGGAAACTTG GTCACACCTT ATCCACACAC
ATCTTCTCTG ATTCTGATAA GATACCACAA AGTACAACCC AATAGAAGAA AATGGCTAAT CCAGAATATA ATAAGGTAAA
AATCTTTGCA CAGTTAGTTA GCATCAAGAG AAAGAAAAAA CAAAAATAAA CAAAAAATGT CTCTGGCATC TTCAATCCCA
TGCATCAAAA TCCCAACTTG TTCCTCTTCT CCATCATGTT CTTCCTCAAC TTCATCCTAT TCTTTCAGGT TTTCTTCTTC
CAAGCCTCAC AGTGTCACTA TAAGGAGCTC TCAGGCTGAA GGGCCTGTGA GAAGGCCAGT GGCACCCCAG ATAAGAGAAC
CATCATCAAC AAGTGTTCCT CCTCAGCTTC AGAAGCCAGC ACTTCCTTCT CAGACTCCTC CATCACCCCC TTCAGTGGTG
CCTCCACCAC AGAAGCCTGC TAGTTCTGTT GTTGGGGATG GTAAGAATGT CATTACATTA GAGTTTCAGA GGCAAATGGC
TAAGGAGTTG CAGGAATACT TCAAACAGAA GAAGCTTGAA GAAGCAAATC AGGGTCCTTT CTTTGGTTTC ATAGGGAAAA
ATGAGATTAA CAATGGAAGA TGGGCAATGT TTGGTTTTGC AGTAGGATTG CTTACAGAGT ATGCAACAGG CTCAGACTTT
GTTGATCAAA TAAAGATCCT TCTCTCGAAT TTTGGGATAG TAGATTTGGA ATGAATGAAT ACCTCAATAT GAAATACTGT
CAATACTTTC TTGTTCCTGT CGCTGGTGTA AACTATGTTG AGTAATTTGT TTTGTAATTC ATTTGTACAA AACAAGCTTT
CTCTTCATAT TGATGAATCT CAAGAATTTG ATGTTCCTTT TCCCATTATG CTGGACTCCC TAGAGATCGA AAAATTTAAA
GAGCATTGCA GTTTTATAGT GACACTGATA CTGATAGAAT ATGTAAGGTT GTGATAGATT ACATGGTAAC TAATCAGCTA
TTCTCTTGAG GAATAGCTTG GAAAGGTAGT CGGTTTTACC AGCTTGAAAC CTGTGTTGAA AATATGTCTA ATATCAGAAG
TTTGAAGTGG ATAATTTCCT ATGAATTGTC ATTGTCACAA CTCTGATAAT ATGTTGTTTT GTAAAGTGAC ATTGTGAAAC
GTTTCTATCT CGTTTTATTG GAAATATAAA GTTTTTGTTT ATTTTTCTTA TAAGATTGAG ATGACTTCTT GTGAGACTAT
CAAGTTTCCA ATGAGATTTT CTTCCTCCTT TTCCACCAAC C

>Vigan.11G142000.01
ATGTCTCTGG CATCTTCAAT CCCATGCATC AAAATCCCAA CTTGTTCCTC TTCTCCATCA TGTTCTTCCT CAACTTCATC
CTATTCTTTC AGGTTTTCTT CTTCCAAGCC TCACAGTGTC ACTATAAGGA GCTCTCAGGC TGAAGGGCCT GTGAGAAGGC
CAGTGGCACC CCAGATAAGA GAACCATCAT CAACAAGTGT TCCTCCTCAG CTTCAGAAGC CAGCACTTCC TTCTCAGACT
CCTCCATCAC CCCCTTCAGT GGTGCCTCCA CCACAGAAGC CTGCTAGTTC TGTTGTTGGG GATGGTAAGA ATGTCATTAC
ATTAGAGTTT CAGAGGCAAA TGGCTAAGGA GTTGCAGGAA TACTTCAAAC AGAAGAAGCT TGAAGAAGCA AATCAGGGTC
CTTTCTTTGG TTTCATAGGG AAAAATGAGA TTAACAATGG AAGATGGGCA ATGTTTGGTT TTGCAGTAGG ATTGCTTACA
GAGTATGCAA CAGGCTCAGA CTTTGTTGAT CAAATAAAGA TCCTTCTCTC GAATTTTGGG ATAGTAGATT TGGAATGA

>Vigan.11G142000.01
MSLASSIPCI KIPTCSSSPS CSSSTSSYSF RFSSSKPHSV TIRSSQAEGP VRRPVAPQIR EPSSTSVPPQ LQKPALPSQT
PPSPPSVVPP PQKPASSVVG DGKNVITLEF QRQMAKELQE YFKQKKLEEA NQGPFFGFIG KNEINNGRWA MFGFAVGLLT
EYATGSDFVD QIKILLSNFG IVDLE*