GBrowse Details

Vigan.11G125400.01

Basic Information:
Name: Vigan.11G125400.01
Multiple alignment
Variant Information
Position: Chr11:19123282..19126915 (+ strand)
Length: 3634
Functional Information:
Description: Similar to uncharacterized protein. [F6HNG2, Vitis vinifera]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:77.73,33.75,29.28,23.28,34.11,48.30,33.86,28.84
Arabidopsis thaliana homolog: AT2G28370.1
Automatic updates:
Name: NM_001249739 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306043 (LOC100306043), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:19123282..19123482 (+ strand)
Length: 201
Type: five_prime_UTR
Position: Chr11:19123483..19123700 (+ strand)
Length: 218
Type: CDS
Position: Chr11:19125720..19125852 (+ strand)
Length: 133
Type: CDS
Position: Chr11:19126391..19126582 (+ strand)
Length: 192
Type: CDS
Position: Chr11:19126583..19126915 (+ strand)
Length: 333
Type: three_prime_UTR

>Vigan.11G125400.01 class=Sequence position=Chr11:19123282..19126915 (+ strand)
GTAATAACGC TGTCGAAAAA AAAAAGAAAA TGAAAAGGAA AAGGAGTGTG ATGAAAGAGA AAAAGCGTGT CAAAGTTCCA
CCAGCAGCAG TAGTACCACC ACCAACGTTT GGTGGAGCGA AGCAAAACCT GTAGAACCAG AAAACCCTTT GTCGTATTAT
TGTTCTTTTC TCTCTTTGTT CTTGTTCTTG CACGTTTTGC CATGTCGATG TCGATGGTGC ACCCTTCAGT TCACCCAATC
GAAGCCCCAC CCATGACTGA CCATGCAATT GCAATTCCTA GACACACTTT GAAGGACACT CAGGGCATGC CCGGCACCCT
CGGTGGCTTC CTCTTGCGCT TTCTTCAGTT CTCCTTTGCC GTCGTTTCCC TCTCCGTCAT GGCCACCACC TCTGATTTCC
CTTCCGTCAC CGCCTTCCGG TAATTAATTC AGTTATCCCC TTTCCTTTCT TATTCCACCT AGTAAATTCA TTTCCCTTCT
TTCTTAATTG GGGCTGTGGT AATTGTTGTT GAAAATCAAG AGGCTATGTT TTTTTTAATG GGGTGTTCTC AGAAACGGGT
TCGTGAAGTG GGGATGAGTT CATTCCCTTT TTTCTGATTT TTTTCTTAAT TGGGGGTGTG GTAATTGTTG TTGAAAAGGG
TTTTCTTTTG TGAAGTGGGG ATGAATTCAT TCCCTTTTTT CTGCTTTTTT TCTTAATTGG GGGTGTAGTA ATTGCTGTTG
AAAATCAACA AGCCAGGTTT TTTTTTTTAT GGGGTGTTCT GAAAAATGGG TTTTGTAAAT TGGGGTTATG GTAATTGCTG
TTGAAAAATC AACAACCCAG GTATTTTTTG ATAGGGTGCT CTCAAAAATG GGTTTTGAAA ATTGGGGTTA TGTGTAACTG
CTGTTGAAAA TCAACAAGTC AGGTATGGTT TTGATGGGGG GTTCTCAAAA TTGGGTTTTA TAAAGTGGGC GAGTTCTTGT
GTGGAAGACT GCTATTTAAG CTACTAGAGT TCCACACTGT TGATCTATGT GATTTTTGGT ATCTACCGTG TTTGTCTCAC
TTGGAGTGTA TACATGTATA TTTTTCCAAC AAAAGTAAAT TATGCAGATA CCCTTATAAG TTTTTTCCTG ATTGCATGTA
ATCTTGTTTT TTTTACCGTT TATAACAACT TTCCTTGTAA AGGTTGGAAT GTTTTCAATT AATGCTTTTT AAACAATTAA
AGAGATTGAT GTAGGGAGAG GAAACGGAGA GGTATCGGTG TAATCTGAAC AAACTTTAGG GTGTCAACGT AGTTTGCTCT
ACTAAAAAAG ACAAGGGGTG ATGGGTTTCT CTACTTTCGT CAAATGCAAT GAATTTAGTA AGAAATTGAT GGGAGTTTTA
TGTTCTCAGG TTAACTCTAA AGTGGGAAAA TTTGGAAATT GTTCATCTCA GAATAATCTT CTGAGATATT ATTCACCATG
AGATTCTTCT TAACAACTTC CTTAAATGTA GTTTTTGGTC TCCATCTCCC CTTTGCTTAG AATTAAAAAT CATGCCATTT
ATTTTTCCTA CCGGGTTGTT TAATGAACAT CTCCAAACCA CTTTAATCAA ATTTTGGTTG TCTTTTCTTC AGTTTATGTC
AGATCAATAT CTCCTCTTCT TGAGTAACTC AGTAGCCGCA GAAAATTCAG TTTGATAAAA TGGTGGGATA CCTAGGTTTG
TTCCAAAGTC AACAATCCAA GCTCTTAGAA TTAAGTTACC ATTTATGTTT TATTTTCTCC TCAATTGAAT AGTCGAAATA
TACTGTCTTT TGATTTGTCT AGGTGGTTGG TATTTCTCTA GTTTTCTGTT ATGAGGTCTG CTACATGTCT ATGTTGGTTG
AGTAGATTTT CAACTAGAGA TAAATTGTGG TGGAATACAT TTGTCAATAA GTTGGACTAA GACCTGATGA GAGGAGAATG
GTGTATACAC ACTTAAGGTG GTTTGGTCAT GCTAGGAAAA ATCAATTGTG GTTCTAGTGA GAAAAGTGGA TCAAATAGAA
TAGTCCAGCT GAAAAGGGAG AGGATAACTG AAGAAAAACT TTAGAGAAAC CACTAGGACC CCAGCAGACT TTCTGAAAAT
CTGTCTTTTA ATGAAACGTA ATGGCATTGT ATTTGTTCCC AACCTCAGTG GCATAAGGTT CAGATTTTTA GCAATTTCAT
TCCAATCACA ACTGCTGATC TGTTTAAGCC TTTGCTTTCA AATCTATTTG GGAGGAACAA CTTTTTAAAA AGACTATGTA
CGCTGTGTTA ACAGGAGTCT TAAATATAAG ACTTGGAATT AAAATAAGAT TCGAGAGTAT GCAAAGACTG CATTATATGA
ATTGAAGGAA GTCATATTCC AAAGGAGATC TGATCATCAG GATTTGATGA TATCTACTAC ATTCACAGTC TACATTTTCA
ACATATCATA ACTGGTTTTG TTGAATTTTC TGTGCCAGCT ACCTAGTTGC TGCTGTCAGC CTGCAAAGCT TGTGGAGCCT
CTCTTTGGCA GTTGCTGATA TCTATGCCAT TTTAGTACGG CGTGGCTACC GAAATATTAA AGTCGTCTGC TTATTCTCTA
TCGGTGATGG GGTAAGGCAA TGCTGGAATA CTTTGTTAGC TTGTGTAATT GATTTTTGTA AAATCGGTGT TATCCTCACT
AGTGTCTTGA AAACACAATG GCAAAGAAAC TGTCTCTGGG TAGATTAAGT ATCCAAGACA GTTGTTACCA CCATGGTAGC
AGTAAAGGTA GTGAAAAAGT TCAGTCATTG TGCATTAAAA ATATAACCAT ACACATGATA ATTGTCTGTC TTCAACCAGG
GAGAAGCATC ATTTCAAGGA AATAAAAATG TAAGACTTCT ACCTGACTAT CATCAGACTG ATATAATATG CTATAAAAAT
ATAACACTGT ATATTAGCAA AATACATTTT AGCTTTGGAA CCGATTATTT AGTTATTTAG ATATATTATT TGCACTTAAG
AAAAGTGGGA AGATGCTGTA GTTAACTTTT TCAGCTACCC TATTATGGGA ATATGTATTT GTTAGTTCAT TTGTTTTAGA
AATGTTGTAT ACTGTACTGG AATTCATAAA AATAATACAG AGGCACTTAT ATGTGGAATT TTGCTGCAGA TTACTTCAAC
ACTTACATTT TCTGCAGCCT GTGCTTCTGC TGGTATCACT GTTCTCATTG GCAATGATTT GAATGACTGT GCACAGAACC
ATTGCAGTAG GTTTGAAACA GCCACGGCAA TGGCATTTAT GAGTTGGTTT GCTGCTTCTC CCTCATTTAT TTTGAATTTC
TGGTCACTGG CCTCCAAATA GAAGCAGCAG AAAAGGGTTT TAGCTGTTTA TATATGGCAT GTAACTTTGG GGATTGATGG
CCCTGATTGT TGCAAATCTT ATTCATGGCT TTTTTGATCC TTTGAAATAT TGGTGCTGTT CAATTCAAGG CATGAGCTTG
AAACTTTTAG TTGTGATGTT CATAATTTCT CAAACAATGG TAACTTTCCA AGTAAATGTA GATCAAATTT AACTTGACTC
ATTAATCTGT AGGTTAAACA GGTTCGGACT TTGTCGAAGG TTCAAACTTT GTTGAAGGTG GGTTGATTTA TAATTTATCA
ACAACAATAT TTTATTATTG GTCTATTTTT TTTA

>Vigan.11G125400.01
GTAATAACGC TGTCGAAAAA AAAAAGAAAA TGAAAAGGAA AAGGAGTGTG ATGAAAGAGA AAAAGCGTGT CAAAGTTCCA
CCAGCAGCAG TAGTACCACC ACCAACGTTT GGTGGAGCGA AGCAAAACCT GTAGAACCAG AAAACCCTTT GTCGTATTAT
TGTTCTTTTC TCTCTTTGTT CTTGTTCTTG CACGTTTTGC CATGTCGATG TCGATGGTGC ACCCTTCAGT TCACCCAATC
GAAGCCCCAC CCATGACTGA CCATGCAATT GCAATTCCTA GACACACTTT GAAGGACACT CAGGGCATGC CCGGCACCCT
CGGTGGCTTC CTCTTGCGCT TTCTTCAGTT CTCCTTTGCC GTCGTTTCCC TCTCCGTCAT GGCCACCACC TCTGATTTCC
CTTCCGTCAC CGCCTTCCGC TACCTAGTTG CTGCTGTCAG CCTGCAAAGC TTGTGGAGCC TCTCTTTGGC AGTTGCTGAT
ATCTATGCCA TTTTAGTACG GCGTGGCTAC CGAAATATTA AAGTCGTCTG CTTATTCTCT ATCGGTGATG GGATTACTTC
AACACTTACA TTTTCTGCAG CCTGTGCTTC TGCTGGTATC ACTGTTCTCA TTGGCAATGA TTTGAATGAC TGTGCACAGA
ACCATTGCAG TAGGTTTGAA ACAGCCACGG CAATGGCATT TATGAGTTGG TTTGCTGCTT CTCCCTCATT TATTTTGAAT
TTCTGGTCAC TGGCCTCCAA ATAGAAGCAG CAGAAAAGGG TTTTAGCTGT TTATATATGG CATGTAACTT TGGGGATTGA
TGGCCCTGAT TGTTGCAAAT CTTATTCATG GCTTTTTTGA TCCTTTGAAA TATTGGTGCT GTTCAATTCA AGGCATGAGC
TTGAAACTTT TAGTTGTGAT GTTCATAATT TCTCAAACAA TGGTAACTTT CCAAGTAAAT GTAGATCAAA TTTAACTTGA
CTCATTAATC TGTAGGTTAA ACAGGTTCGG ACTTTGTCGA AGGTTCAAAC TTTGTTGAAG GTGGGTTGAT TTATAATTTA
TCAACAACAA TATTTTATTA TTGGTCTATT TTTTTTA

>Vigan.11G125400.01
ATGTCGATGT CGATGGTGCA CCCTTCAGTT CACCCAATCG AAGCCCCACC CATGACTGAC CATGCAATTG CAATTCCTAG
ACACACTTTG AAGGACACTC AGGGCATGCC CGGCACCCTC GGTGGCTTCC TCTTGCGCTT TCTTCAGTTC TCCTTTGCCG
TCGTTTCCCT CTCCGTCATG GCCACCACCT CTGATTTCCC TTCCGTCACC GCCTTCCGCT ACCTAGTTGC TGCTGTCAGC
CTGCAAAGCT TGTGGAGCCT CTCTTTGGCA GTTGCTGATA TCTATGCCAT TTTAGTACGG CGTGGCTACC GAAATATTAA
AGTCGTCTGC TTATTCTCTA TCGGTGATGG GATTACTTCA ACACTTACAT TTTCTGCAGC CTGTGCTTCT GCTGGTATCA
CTGTTCTCAT TGGCAATGAT TTGAATGACT GTGCACAGAA CCATTGCAGT AGGTTTGAAA CAGCCACGGC AATGGCATTT
ATGAGTTGGT TTGCTGCTTC TCCCTCATTT ATTTTGAATT TCTGGTCACT GGCCTCCAAA TAG

>Vigan.11G125400.01
MSMSMVHPSV HPIEAPPMTD HAIAIPRHTL KDTQGMPGTL GGFLLRFLQF SFAVVSLSVM ATTSDFPSVT AFRYLVAAVS
LQSLWSLSLA VADIYAILVR RGYRNIKVVC LFSIGDGITS TLTFSAACAS AGITVLIGND LNDCAQNHCS RFETATAMAF
MSWFAASPSF ILNFWSLASK *