GBrowse Details

Vigan.11G124500.01

Basic Information:
Name: Vigan.11G124500.01
Multiple alignment
Variant Information
Position: Chr11:18822388..18826479 (+ strand)
Length: 4092
Functional Information:
Description: Similar to Uncharacterized protein. [C6SX47, Glycine max]
InterPro: Transmembrane protein 18 (IPR026721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.69,6.04,14.75,8.43,14.78,11.27,20.28,10.65
Arabidopsis thaliana homolog: AT1G34350.2
Automatic updates:
Name: NM_001250187 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527513 (LOC100527513), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251672 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305910 (LOC100305910), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:18822388..18822686 (+ strand)
Length: 299
Type: five_prime_UTR
Position: Chr11:18822687..18822827 (+ strand)
Length: 141
Type: CDS
Position: Chr11:18824083..18824188 (+ strand)
Length: 106
Type: CDS
Position: Chr11:18826025..18826173 (+ strand)
Length: 149
Type: CDS
Position: Chr11:18826267..18826362 (+ strand)
Length: 96
Type: CDS
Position: Chr11:18826363..18826479 (+ strand)
Length: 117
Type: three_prime_UTR

>Vigan.11G124500.01 class=Sequence position=Chr11:18822388..18826479 (+ strand)
GGTTGAGAGA TGTTTGTCAA ATAATTTTTT TCTTAACAAG GTTATTTTAG TCATTTAACA AAGATGGTAG GTGTGGGAAA
AAGGTATGAA GCAAAAGGCA TCTATTTTGT TGGGCATGAC AAAGGCCCGA TCCAATAAAA GGCCCAAAAA GAATGTTTCG
AGAAAGAAAA AAGCAACTAA CATATCAGTT TTGACGAAGG GAAAGTTCGG GCATAAGAAA ACCTCTTGCA GTGTATGAAC
AGGACTTGAA TCGGGGTACT GCATTGTTTT GTGAGACAAA AATTTAGAGT GTTAGAAGAA TGGAGGAACT AAAATCTGCT
ATGGAGGAGC ACATGGAGCT TATGGTAGAT CTTGTTCAGA AGTTCTCCAC AGATATTCGT GCTGGCTTTA TCCCCGCTTA
TGATAACTTT ATGGGTTTCT TCCATGCCAT TGACTGGAAG GTAGCTTTCC AGTTTTGGTT TTTCTTAACT CCGTTTGTTC
TTTTTTGATT TTCTAGTTTA GTGTTTGTTC TTCCTTTCTT TATGGATCTA TGGGTTTTCA ATTTAAGCTC CGTGTTCTTT
TGTTCTTGGA ACTCACCGTT TGTTGTATAT TGATTTTCGA TTTGCGGGTT TTCAGTTTAA GCTCATGTTC TTTGTGTTCT
TGAGCTGTGA ATTGTGGATT TGTGTTTTCA ATTTGATTGT CAACGTGATT ACCATAATGC GTTACTTCCT ACAATTTAAG
AGGCGATAAG GACTTTCTGG TGTTTGTTAC TTGAATGACA GCTGCAGTGT TGAAGTCTGA ACTTCTCTTA TGACGAGGAG
GGCGATTTTA CTCCTATTTT AATAGATGGT TTCTTTCGTC AAGTATCCAG CCACATCTTA TCAATACCTT TCATCAACCT
TTTGTGTTAG ATTTGCTATT CATAGTTGCT CTTTCACATT ATATTTTTGT GTTAGAGTGC AATGAGATTG AATAAAACCA
ATTCCTCTCT TTTCTTATTA AAAGAAAAAT TAAAAGAAAA ATTTACTGGA CTGATGGGAG GCTTTCTAAT AATTTTTCTG
ATGAAAATGT ATTTCAAATC AGAAAGTGAA AATGTTCTCT TATGGTCTCT ATTCTGATGT CATCGTCCAT TGGTAGATGT
TTAGTGCTTG TTTGTGCTGT GAGTGGCATG ATTTTGTTCT TGGATCTCAT TTTGTGCTAT TATATTTTTA GTGATATAAT
CTTATGAATT ATTTTAGATG TTGTGTTTGG TGATATTTGA TTATTGGAAT AGGTATAAGT TGGATAGAAA TTTTCAAATT
CAAATTTGAT GAAGAGGGGA TGATTGTACG AAAACTATTA CTTCATTTGC AATTTGGTAT TGTAAGTGAC CCTTTCTTTA
TTGTTGTGAT CTTTTAATGT TGCATATTGG ACATCAGTGG ATCTGTAATG CTATCAAAGG TTATAAACAA TATGATGGTA
TTTGTCTTGT CAGCTTAATA GAAAAGGAAC AATGGAAGAG AATTCATGTT GGTTCTTGGC AGGAGTATCT TGAGATTTCA
TATCTATATA CTGCTGTCTT AGTGTACAAT GCTTATAACA TTTACATATG TACTTTGGTT TTCAAATCAT GACCTTCAGT
GTTTTCTGTT CTCAGATTGT TCAATCTCTA TCACTTTTCT TTTTCTGAAC TCTCCTTTTT GGTTTACTAA TTTTTCTTTT
TACCCTTTGC TTCAGGAACC ATGGATAATG GGATTAGCAG GATTCCATGT TGTGTTGCTG CTTGTAGTTA TCATCTCTAG
AAAGAAAACG AACTTTCAAA TGTTTTTATT CCTTTTGACA TGTATGTTAC ATTCCTTACT TATTTTAGGC TGAATTAAAA
CTGATATATT TATTTTGAGG CAGCTAGCCT AATTCTTGTT TCATTTTGTT GATTTCCTTG AATCCTTCCT AATAGTAAAG
TTAGTGCCTT GCCTTTGCTT GATCATGTTA GCTGAAATAA AATGCCTCAC ACAAATTGTC TGAAAATGAG AGGAATGCTG
TCCAATATTA TGTTTGGCTT TGAGCTTCAT GCAAGCATTT TTCTTGTTAA TGTTTCTAGA ATTGCAAATA TACCTACTAT
TGTCAAATTA GTGGGACAAA ATCCAGCCAT TTTAGCATCT TGAAACAATA TATTCTTTTG CAGTGTGAAG AGCTCAAATT
ATTGTAAATT TCTCCATATC ATTTATGTAA ATATTTCTTT TAAAATGAGA AATTTGATGA TGGATTATCA TTTATATCCA
GTACCTATTT AATCCAATTG AATATTCAAG CTCATTCATA ACCAATTTGA TGATATATCA TTCTTTTAGG ACACTTTATC
CTAACAGGGC TTGCTTTAGA TAATGGGTCG AGTGGCACAA CTTTATGAAT CTATTTGAAG AGGAAGGTTG TAGGGGGATG
TGGATGAGCT GACTAGGCAG ATTGTTGGTA TGTATTGTAT CTAGGGGAGA AACATTAGTC TGATAAAGGG GAGTGCATTA
GGACCTTAAG AAATGTTGAT GTAATTTCAC TGGATTGATA CAGTATTACC TAGTTTCTTG ATTTATCTAG TTTAACAGTA
GCAAATATGA ACATAACGGA TTCTCTGCAT TAGTCTTAGA TGTGCTGAAC TCGTCTTTCA TAAAGCACAA AAGTTGAATC
GTACTTAAAG TTCAGTAGTA GAGTCTAGAA AATTTTATTC TACTTTGATG TTTGCTATCT TTCTGCAAAA ATTTCTTGCT
TTGTGCCTAT AGAAAGAAAT CAAGTTATAA AGATGGTAGG GTAACAATTG TACCATACGT TTTATGTGAG GCTGAAATTT
TCCGAGACAA TTTTCATTTT GGGGAAAATT AAGTTAAATT CTTAATGGGC AGGATTTTCA TAGAATCATT ATAAATTTAA
ATCCTGAAAA GAGGATGATG ATGCAAACAA AGGCTGTTTA ATATAAGTAA GAAATATTGC GTTCTATTTA GGATATCCTA
GATTTACTGA TGTTTAGGAT ATTATTGTGA AATTTGCTCA ATATTAGTCA TCTACAATGG TCTAAGCAGT GATATATCAT
TTCATTATGT ATCATGATTA ACCATCTATG TCCTGAACTC GACGATTCCT TGATAAATAG ACTGTAAAGA AATGGATGCC
TAGGAATGGT TTTACATCCG ACATGCCTCT TATGCAAGAG CCCTTTGGTT TTGAAGAGCA AGTGATGCAC ATGCACTATA
CCATCTTAAG GGCCATCTGT TAAAATTTTA AAATTTTTGT GGTAATTATT GACCCAACGA CGACTATATT TATCTTTTAC
TAGCATTATT AAACTTTGTT GATAACTAGT GCTATTTTTC TGTGACTAGT TGTTTATCAT TTTAACACCA TCAATCTCCC
ACTTTTATAT CAACATTATG TGACTTCTAC CTTTTGTATT GATTGAACCC TTTATAATCC CTGCGACGTA TGTGGTCTAA
CTGTCATTAA TTTTTTCATC CCCTTGTATG CTTGCAATCT TGCAGATGTT TCTGAAGTTC TAGTCTCTAT TAACTTTCCT
CTTTGTTCCC ACAATAGAAC ATTATGACGT TGTTTGCGTA GCATGCATTC AATCTCCCTT GTGGGAAAAG ACTTGGTTGT
TCTTGAAGCT TGTCTTAGTA CAAATTGTTT GATGCAGTGG CTGGTGTATA TCTTGCTGAG CCTCTGAACA AAATTATGGG
TAAAAACTGG AAAAGCTTCT CTGGTCAGAA CTACTTTGAT CCCAGTGGGC TATTTATGTC AGTTCTTTGG TCTGGACCTC
TTCTTATCAT TTCTATGATA ATCTTGGTTA GTATTTTCCA TCACATAACC ATTTCAGTGC TGCTGGTTTT TTTCTTTTCA
CATTTAACAT TGACTTGAAA TATCTTTCTC TATGTGCAGG TCAATACACT CTTCTCCTTA TGTTACTTGA TTGTTAGGTG
GAAAAGAGCT GAACTGAGAC ATCGTGCAAG GGCTGCTCGT AACAAACAAG AGTAGTTCAT GCTTGGCAAT GTAATAATAA
GGTTTTGCAC AAGAATTTTG TTTTTCTTTT TTAAGATCTG CTTATTTAGT ATTTTTATTA TTTCTAGTTA TGTTTGTGTA
CTCTATTTAC GG

>Vigan.11G124500.01
GGTTGAGAGA TGTTTGTCAA ATAATTTTTT TCTTAACAAG GTTATTTTAG TCATTTAACA AAGATGGTAG GTGTGGGAAA
AAGGTATGAA GCAAAAGGCA TCTATTTTGT TGGGCATGAC AAAGGCCCGA TCCAATAAAA GGCCCAAAAA GAATGTTTCG
AGAAAGAAAA AAGCAACTAA CATATCAGTT TTGACGAAGG GAAAGTTCGG GCATAAGAAA ACCTCTTGCA GTGTATGAAC
AGGACTTGAA TCGGGGTACT GCATTGTTTT GTGAGACAAA AATTTAGAGT GTTAGAAGAA TGGAGGAACT AAAATCTGCT
ATGGAGGAGC ACATGGAGCT TATGGTAGAT CTTGTTCAGA AGTTCTCCAC AGATATTCGT GCTGGCTTTA TCCCCGCTTA
TGATAACTTT ATGGGTTTCT TCCATGCCAT TGACTGGAAG GAACCATGGA TAATGGGATT AGCAGGATTC CATGTTGTGT
TGCTGCTTGT AGTTATCATC TCTAGAAAGA AAACGAACTT TCAAATGTTT TTATTCCTTT TGACATTGGC TGGTGTATAT
CTTGCTGAGC CTCTGAACAA AATTATGGGT AAAAACTGGA AAAGCTTCTC TGGTCAGAAC TACTTTGATC CCAGTGGGCT
ATTTATGTCA GTTCTTTGGT CTGGACCTCT TCTTATCATT TCTATGATAA TCTTGGTCAA TACACTCTTC TCCTTATGTT
ACTTGATTGT TAGGTGGAAA AGAGCTGAAC TGAGACATCG TGCAAGGGCT GCTCGTAACA AACAAGAGTA GTTCATGCTT
GGCAATGTAA TAATAAGGTT TTGCACAAGA ATTTTGTTTT TCTTTTTTAA GATCTGCTTA TTTAGTATTT TTATTATTTC
TAGTTATGTT TGTGTACTCT ATTTACGG

>Vigan.11G124500.01
ATGGAGGAAC TAAAATCTGC TATGGAGGAG CACATGGAGC TTATGGTAGA TCTTGTTCAG AAGTTCTCCA CAGATATTCG
TGCTGGCTTT ATCCCCGCTT ATGATAACTT TATGGGTTTC TTCCATGCCA TTGACTGGAA GGAACCATGG ATAATGGGAT
TAGCAGGATT CCATGTTGTG TTGCTGCTTG TAGTTATCAT CTCTAGAAAG AAAACGAACT TTCAAATGTT TTTATTCCTT
TTGACATTGG CTGGTGTATA TCTTGCTGAG CCTCTGAACA AAATTATGGG TAAAAACTGG AAAAGCTTCT CTGGTCAGAA
CTACTTTGAT CCCAGTGGGC TATTTATGTC AGTTCTTTGG TCTGGACCTC TTCTTATCAT TTCTATGATA ATCTTGGTCA
ATACACTCTT CTCCTTATGT TACTTGATTG TTAGGTGGAA AAGAGCTGAA CTGAGACATC GTGCAAGGGC TGCTCGTAAC
AAACAAGAGT AG

>Vigan.11G124500.01
MEELKSAMEE HMELMVDLVQ KFSTDIRAGF IPAYDNFMGF FHAIDWKEPW IMGLAGFHVV LLLVVIISRK KTNFQMFLFL
LTLAGVYLAE PLNKIMGKNW KSFSGQNYFD PSGLFMSVLW SGPLLIISMI ILVNTLFSLC YLIVRWKRAE LRHRARAARN
KQE*