GBrowse Details

Vigan.11G101100.01

Basic Information:
Name: Vigan.11G101100.01
Multiple alignment
Variant Information
Position: Chr11:13512573..13518030 (+ strand)
Length: 5458
Functional Information:
Description: Similar to signal recognition particle 19 kDa protein-like. [XP_004488192.1, Cicer arietinum]
GO: Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614)
Cellular Component: signal recognition particle (GO:0048500)
Molecular Function: 7S RNA binding (GO:0008312)
InterPro: Signal recognition particle, SRP19 subunit (IPR002778)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.03,39.98,16.83,14.98,32.32,33.84,22.27,18.06
Arabidopsis thaliana homolog: AT1G48160.1
Automatic updates:
Name: NM_001248869 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500027 (LOC100500027), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253124 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max signal recognition particle 19 kDa protein-like (LOC100801614), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:13512573..13512716 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr11:13512717..13512893 (+ strand)
Length: 177
Type: CDS
Position: Chr11:13512968..13513067 (+ strand)
Length: 100
Type: CDS
Position: Chr11:13517645..13517778 (+ strand)
Length: 134
Type: CDS
Position: Chr11:13517779..13518030 (+ strand)
Length: 252
Type: three_prime_UTR

>Vigan.11G101100.01 class=Sequence position=Chr11:13512573..13518030 (+ strand)
CAGGATTCGA GAATTGGGCC CGACAATATC CTGGTTTCTC TTCGTCACCT TCTGTCTTTC TTCTTCTCAT TTGGGTGGGT
GCCATAGCAT AAGCAAAAGT AAAATATTCA GTGTTCAGTG TTAGATTTGG CGATTCTGCA AACCATGGAT GCCCAGTTGC
CGAACATAAA AAAATGGATT GTGATGTATC CTGTTTACAT CAATTCCAAA AAAACAATGG CAGAAGGACG ACGGATCGCG
GTCGCCAAAG CTTGCGAAAA CCCTACTTGT GCCGAAATCG GTGATTGCTG TAGCTATCTC AAGCTTCCTT TTGCAATTGA
GGTTTGTTAA TTTTGAATAT TTTACTAATC TCTATTTAAC CTCTGCAAAG TTTATTAATA TATGTAAAAT TGCAGATAGA
CAAGGCGTAC CCTCGCGATT TCATGCAAAG AGGGCGCGTG AGGGTGTTGC TGAAGACGGA AGATGGGACA CTCATTAACC
CCTCCATCTC GTCCCGTAAG ATTTAATTTT TCAACCCATA TGAATTTCTG TCAGTATGTT GCTTTGAATC AGATCTGGCT
ATGGTGGTAT CCATGAACTG TAGTTATACT TGGAATTAAT ATTTCCAAAA CTCATACTTT GGTCAGTCGT TGGCATTAAA
GAATTGTTTA TGAAAAACTT CCAAGTCATG TTGATAATTT GCATTACATG TATTTCCTGC TAAGAGTAAA ATATGCTTCA
ATTAAATATG TTGAGAATAG AAAAAATCAC ATTTAGGATG TAGAGGTTAT TACTGTTAGC TTCAGAAATC ATATTTGATT
CGGGAAAATC GTCTATTAAT TGTCCAATAA CCTCATGTTC CAAATAGTAG GTTACTTAAA TGTGTGTATA TATATATATA
TATATATATA TATATGTATG TATGTATGTA TGTATGTATG TATGTATGTA TTGATTTATG TATAGAATTC AACTTCTACA
CATGCATAGC CATTTAAATG TTAAGTTCTT GATTCTACTT TCTCATTGTC ATGAGTTATT GTAAGTGAAA TTTATATCAT
CGCTATTGGA AATTGGTAGC CAATGTGAAA CTCTCCTTGT TCCACCACTA CTCCAAGATC AGCTTTTTTT TATCCACCAT
CGGCTTGGCT CCACTCTTAA GCAAATTTGG TATAGTGTGG GACAGATAAT TTCATCTTTC TTTCTCACCC TGCACCTCCT
TTCCTATTCT TGATCACTTC ACTCTGTTTT GATGTTTGAT CATTTTCATC TTAACTGTTG TTGACTCTAG CAAAATGTTT
TGCACTAGCA ATGACACGGA AACACTACTT CCTCTACTTG CTATAGACAA GTGGATGACT AAGAAAGTAC ACCTACATTG
GAGGTTTCTT GTCCTCCATT GCGACAATCA GAAAGTCTTG CTCTTGTTGC AAATAATCTT ATAACCCTAA CTTTACCAGA
TGGAGCCTGA ACTAATTTTT GGAAGTACAA GTTTTGGTAA CTTGATAGAT TACTAGAACA TGCTAGATTT TCTAGTGCAG
GCCACTTACA AAATGTGAGC ATGCTAGATT TTCTAGTTGC CAAGTTGACA AAAGAGATCA CCCATCTCTT TCAAATTCGC
AACTATTAGA TTCTACTCAC CCTGGACACC AAGCGAAATT TTCTGCCTAG CACAGAAAAT TCTGCAGACC GAATTGACAA
TTAAAAATCA TTTTGTCAAA CAAAAGATCT AACATACCAG CCAATGCAAT GCCCAACCCG TGGGTAATGG TGATCAAACC
AATCCACACA GTTATTACAA ATTGAACTCT TAGAACATTG AAGAGGTTTG TAGACCATGC ATATATCACA ATGCTTGACT
GTATCAGTGA TTCGATTGAC CTCAACCTCC TTAATGCAAG GCAACCACAG TTTAGGAGTT TGACCAGCTC AACACTACAC
TACTTTCAAA ATCATATGGC TCTGGAGGGC GTGCATTGCA TGGAATTATG CTAGGGTTTT GGTCAGATGT TAGCAAGAGA
AGTACTAAAA CCTAAAACAG ATTATAGCAT CAGCACACTG TGTAAAAGAA TATACTTCAG TGCTCATAGT GCGTAGGCCT
GTTAAGAAAA CTATCAACTG TGAACTAAAT AACTGAACTG CTTTAAACCA TTACTAGTTG ATTTATTTAC AAATTAAACT
ACTCTTAGTC TTTTATTTGT CAAAACAGTC CACTAAATGA ACTTATGTAA TGGTTTAATG TAGTGGATTT AATTAAATGA
AATACTTTAT CACTAACGCA AGTGTTGGGG AGGCAAGGGG TCATTACTTG GACTTCATTA TTGTGCTTCT TTCCTCATGC
TATCTGCTCC AACACTAATT TTTTTTATTT TATTTTATGT TTGCATAATG AACATCTCAT CGAATAAATG TAAAAAGATA
TATATCATAT AATCATAATC TGTATTCATT CAGCTTGATA TCTATTCCAT GTCTTCGCAT CCTTAAATTT GATGACTAGC
ATTTTGAACT GTTAGGTCAT GCTTATATAG AACTTGCTTA TATATTCACC TAAAAGCATT AAAATTTGAT TGATGTAGTT
TCAAGTTCCG TTCACTTTAT TTTATATGTT GTAGAGGTCA GTGATAAAAA ATATGTTAAA TAAGTTTTGG ATACCTCCAA
AATTGACACC TATTGAAGTT GATAAATTCA AAATTTTTAG TGTTTTTGAT ACCGAACATT TAATATAGTT GCTCTTAAAT
TACAGTGTTT CTAATCATCC TAGTCTGATA TTTTCATGTA TGCTGACATG TAACACTGTT CGAATGAGCA TGTCAACATT
CTTAATTCAA AAGTAACACA ATAATTGTTA GGACCAAATT CACATATTTG TTAAGTATTG ACTGTCAAGA ACACTGAAAT
CTTTTTGGAG ATTCCCAATT TTAATACAGA TCCATTTTCA AAGTACCATA AACTTATTTA ACCCTAAAAT ATTATAGATT
GATTGTCTTA AAATCATTGT TTACTGTTTG GATTCAATTT TAAAGCTTTT GTATAAACAG TTCATGAAAA AGCAAAGTTC
TTGAACTTGT AATAATTCAG TACATTTTTT TAATTAGAAT TAGTTCGATA AACATATTAA AAGTTCAGTT CAATTTAGGA
TTTAAATAAA TGGTTTAATA TAGCTTTTTA AAACTAGCTT TCAGTTCATT TATTTCATTT AGTTTCTCCT CTTGAACTAC
ACTATGAACA GTCCTAGTAG TTATGCGCAA ATGCATAATG TTATCCAAAA TAAATTGGTA TCGCTGCTCC ACTTTCTCGC
AAAATATACC AAATGATAAT TAACCAGCAC ATAAAAGTCG ACGAACGTGA ATAATCCTGC CATGCTAGCT GCTAGAAATA
CAAGCCCTGA TAGAAAGAAT TTAAATTTAA AGAGAAAATT TCTCCTTTCA AACAAATTTG TAAAAATTCC ACTTACTTTA
GTTTGCTGGA ATATTCACTA AAGTTCTGCT GGAATATTCA CTAAAGTCCT TGCCCAATTG TCTACATTTG TTTTGTGAAT
TAGAAGCCAA ACTCACAAGT GACTGATCAT TTTGTAACAT CCATGGATAA CTGTTTGTGA TTGATATCGG GTTCCTCGAT
CGAGATATCC AACCCTTGGC TTGAGGGGTG TGTTAGAGAT CCCATATTCA CTAAAGATAT GACTAAATAA CAATATTTAG
GTGACTGCAA AATTGATCTT ACAAGCTAGT TTTGTAGTGT TGAATTATGT TTAAATTCCA TTTTCTTAAG AACATACTAT
AATCCTGAAT TTAAACTTAT TATAAAGTGA AGCGTGGAAT GGATGATTGT TTAGATAGGT TGGTGAGAGA CATTGATAAG
ATCTGTAAAG ATTGATCCTA AAGTTGATAA TTTCAAGAGA AAATCTATAT TTTTTGGTAG TTTAATAACT CAATATGCAC
TTCAAACCAT AACTTTAGCT CAATGGTGGG ATTCATATGT TGATGATCAT CGAGAATTAC CAAGGTTTTT CTATTGGAGT
ATTGAGTTTG ACTTTTTTAT CTAGTGTGGT AATTTGAATT TATGAAATTG ATTTTATAAT CAGGTACCTA TGGCTTGTAT
AATATGTTAA TTAATTTTAT ATAGGTCTGC AATGAGAAAA TAGATTGTTT ATTATAAATG ACCATGAATA ATGTGTTGTT
TGTGATGACT AATTCAGAAT TGAACAAGAA GGATGTTAGG AAAAAATGTC TATAACATTG ATAATCTTGC TTTTGTTATG
AATGGACTGT GGAGGAGAAT GGAGCAAATT CAGATTTGGA TGCTTCAAAC GTAGACATCT TAGCTAAAGT TGGAGAAGAT
GTTAGTGGTG CTGCACCTAT GGATGATTTG GAGGTTCCTC CAATTACTTA ATGGTGTAGG CAGGCGGCAG AGATGACATT
AATGAATATG AAGATCATGA GGACGAGGAT GACTATTTTG ATTTTAATAT GAATGATTTC CTTGGATAGT TTGTTTGCCT
AAAATAACTA TGAATTTGTT AGTTGTTATG AGTAATTTTA TCACATGTGA TTCTACTTAT AGTTGTACTA TGTATGGGAT
CTTAATATTT ATAATTTGTT TTCACATCCG AAATCGGATA CTCCTACTAC TATCCTTGAG TTTGACAATA TTGAGTGGGT
GAGCTGGAAC ATGTGGAAAG CAATCACAGA ATAAATATGT GGGGAGGTAA TGAGTGATAG AAATGCAGGA AAAGAGTTTG
CTACGTAGTT GGGCAAAGAA TTCTTCTCTA AGTTGAGGAG TCCTACGCTT TGGTTTACGT CTATTTCATA TTCTCAGTTT
CCTTTCCTAA TCTCTGTTAA CTGCTTCATT TCTGGTTTTA CTGTTTTTGG ATGATGTTAA TGAATAACGA TGATATTTTT
TGTAATGCAT GTTTGGAAAC GGTTACTTTT TTGAGCCTTA ATTTCTCTGA CATTACAAAT GCCATTTCGT TGTTTATTTT
TTTGGTTGTA AACATCACGT GTCAAATTGA TGAGAAAATG ATCTTGTAAT TGGATAGAAA CTATGACTAT AAAAAGTCTA
ATGTTTTCAT TTTGGGCGTG CTTGTTTTAC AGGAAAGCAA CTGATGTTAC GGGTTGCAGA GATGGTGCCT AGGCATCATG
GAAGAACCAA GAAGCAAGAG ACTGCATCAA CATCAACTAC TGGACCTTCC CAAAAATCTG GAAAGGGTGG GAAAAAGAGG
AGATAATTTA TGTTTCAAAC GTTGTTGTAC ATGTTTGAGT GTTTTGTCAG ATGTACTTTA TATGATATGA CCAACTACCC
CAACCAAGTT AAAAAATTTA GGCATTCTTA CACTCGGGCC TCTATTTTGC GTATTGGACA ATTTTTTCAT AGCCCTTCAT
TTGGGAGGGG TGGGACACAT TTCTGAAGTT GTTAAGGGGT TACTTCTGCA ATCAAAATTT TGATGTGATT TATTTGAACA
CTTATTCTAT TTGATATT

>Vigan.11G101100.01
CAGGATTCGA GAATTGGGCC CGACAATATC CTGGTTTCTC TTCGTCACCT TCTGTCTTTC TTCTTCTCAT TTGGGTGGGT
GCCATAGCAT AAGCAAAAGT AAAATATTCA GTGTTCAGTG TTAGATTTGG CGATTCTGCA AACCATGGAT GCCCAGTTGC
CGAACATAAA AAAATGGATT GTGATGTATC CTGTTTACAT CAATTCCAAA AAAACAATGG CAGAAGGACG ACGGATCGCG
GTCGCCAAAG CTTGCGAAAA CCCTACTTGT GCCGAAATCG GTGATTGCTG TAGCTATCTC AAGCTTCCTT TTGCAATTGA
GATAGACAAG GCGTACCCTC GCGATTTCAT GCAAAGAGGG CGCGTGAGGG TGTTGCTGAA GACGGAAGAT GGGACACTCA
TTAACCCCTC CATCTCGTCC CGAAAGCAAC TGATGTTACG GGTTGCAGAG ATGGTGCCTA GGCATCATGG AAGAACCAAG
AAGCAAGAGA CTGCATCAAC ATCAACTACT GGACCTTCCC AAAAATCTGG AAAGGGTGGG AAAAAGAGGA GATAATTTAT
GTTTCAAACG TTGTTGTACA TGTTTGAGTG TTTTGTCAGA TGTACTTTAT ATGATATGAC CAACTACCCC AACCAAGTTA
AAAAATTTAG GCATTCTTAC ACTCGGGCCT CTATTTTGCG TATTGGACAA TTTTTTCATA GCCCTTCATT TGGGAGGGGT
GGGACACATT TCTGAAGTTG TTAAGGGGTT ACTTCTGCAA TCAAAATTTT GATGTGATTT ATTTGAACAC TTATTCTATT
TGATATT

>Vigan.11G101100.01
ATGGATGCCC AGTTGCCGAA CATAAAAAAA TGGATTGTGA TGTATCCTGT TTACATCAAT TCCAAAAAAA CAATGGCAGA
AGGACGACGG ATCGCGGTCG CCAAAGCTTG CGAAAACCCT ACTTGTGCCG AAATCGGTGA TTGCTGTAGC TATCTCAAGC
TTCCTTTTGC AATTGAGATA GACAAGGCGT ACCCTCGCGA TTTCATGCAA AGAGGGCGCG TGAGGGTGTT GCTGAAGACG
GAAGATGGGA CACTCATTAA CCCCTCCATC TCGTCCCGAA AGCAACTGAT GTTACGGGTT GCAGAGATGG TGCCTAGGCA
TCATGGAAGA ACCAAGAAGC AAGAGACTGC ATCAACATCA ACTACTGGAC CTTCCCAAAA ATCTGGAAAG GGTGGGAAAA
AGAGGAGATA A

>Vigan.11G101100.01
MDAQLPNIKK WIVMYPVYIN SKKTMAEGRR IAVAKACENP TCAEIGDCCS YLKLPFAIEI DKAYPRDFMQ RGRVRVLLKT
EDGTLINPSI SSRKQLMLRV AEMVPRHHGR TKKQETASTS TTGPSQKSGK GGKKRR*