GBrowse Details

Vigan.11G097000.01

Basic Information:
Name: Vigan.11G097000.01
Multiple alignment
Variant Information
Position: Chr11:12567417..12571231 (+ strand)
Length: 3815
Functional Information:
Description: Similar to mitochondrial import receptor subunit TOM20-like. [XP_004489624.1, Cicer arietinum]
GO: Biological Process: protein import into mitochondrial outer membrane (GO:0045040)
Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742)
Molecular Function: protein binding (GO:0005515)
InterPro: Plant specific mitochondrial import receptor subunit TOM20 (IPR010547)
Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:106.55,60.58,34.23,22.23,166.50,100.02,56.28,22.30
Automatic updates:
Name: NM_001248621 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499753 (LOC100499753), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial import receptor subunit TOM20-like (LOC100819858), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:12567417..12567597 (+ strand)
Length: 181
Type: five_prime_UTR
Position: Chr11:12567598..12567696 (+ strand)
Length: 99
Type: CDS
Position: Chr11:12567950..12568028 (+ strand)
Length: 79
Type: CDS
Position: Chr11:12568427..12568596 (+ strand)
Length: 170
Type: CDS
Position: Chr11:12568710..12568757 (+ strand)
Length: 48
Type: CDS
Position: Chr11:12569940..12570032 (+ strand)
Length: 93
Type: CDS
Position: Chr11:12570553..12570687 (+ strand)
Length: 135
Type: CDS
Position: Chr11:12570688..12571231 (+ strand)
Length: 544
Type: three_prime_UTR

>Vigan.11G097000.01 class=Sequence position=Chr11:12567417..12571231 (+ strand)
TATCTAAAAT TGAGTAATGG TTCGAATGTA ATTTGAGGAA AGAGAGGGCA ATTTCAGGTC TCCACGTAGG TCATTAGCAG
CTACGCTGCC CTCATAAGAG CAGCTGCAGA TTTCCATTCT AAAACCCAAA ACCCTAAAAG CGAGACAAAG CTCCCAAAGT
ATCTGTTGCT CTCAAGCTGC CATGGATTTG CAACAGGGTG AGTTTGATCG CCTCTTGTTC TTCGAGCACG CTCGTAAGGC
TGCAGAAGCC GAATACATCA AGAACCCTAT AGATGCCGAC GTTCGTATAT CTTCTTCCTT TCTATGTTTT ATTTTATTTT
AGATTCGTCG GTTCCTTCGA ACTCCAAATG TTTCTCTCAA AGGATTGGCT CATGGCTACT CTATTTAGAT TATCATCCCA
ATTAATCTGT TAATTTTTGT TTTTATCGTT TTCTGGGTTT ATTTTCATAT GAATTGGTCG TTGCGTGCTA GATTGGGAAA
AATGTTCTGC AATTTTTCTA AAAATGATTC GTTTTTTCCA TTTTTCTCTA CAGAACTTAA CACGATGGGG TGGAGCTTTA
TTAGAATTGT CTCAGTTTCA GAACTTTCCT GAGTCGAAGA AAATGACCCA AGGTACTGCT AATTTTCTTA TTCTACTTAA
ATCTTTTTTG GTCAATTTAG GGCCGATTAT CACTTTTTTT AAAGAAAATG ATTTTCATGC GGTTCAGCTT TTCAAATAAC
CTTAAAGAAT TTAAAATCTG ATAAAAATCA AGAGATATTT TGAAATCCCT AATATTGTAT GTATTTTAAT ATTTTATAAT
TCTCAAGAAA CATAAATTCT GCCAACAATT ATATTTTTAA AGTACATAGA ATATAACAAG TACGCCCTAC ATTTGTTTGG
ACATGAAATT TCCAAAGTAG GGACTTTTTA GTTTTTTATT TTGAAGATTT TAAATGGAGC ATATGCTGAT ATGGTAAGTA
CTTGTGTGCT TATGATTTTG AATTTTTGTT TGCGTTCTGT TTTTGAGCAG AGGCTATTTC GAAGCTGGAG GAGGCGCTTG
AGGTGAATCC CAAGAAGCAT GACACCCTTT GGTGCCTTGG AAATGCTCAC ACCTCGATGG CATTTTTAAA TCCAGATCAG
GAGGAGGCAA AGGTTTATTT TGACAAGGCA GCTCAGTACT TTCGACAAGC TGTTGATGAG GTACAATTGT TTTATTCAGT
GTCAATGGCA GTCTCATCAG AGATGCATCG TGGGATGTAT TTTACGTTTG TCTCAGTTGA AATAATTTCT AATAGAACTT
TTGTCTTATG TAGGATCCTT CAAATGAACT TTACCTTAAA TCATTGGAAG TGGCGGCTAA GGTATGTTTT GTATTATATC
GGTTTTGTAC CGTCAAATTG GTTAAATGAC TCCTTTGACT TATGATTTGT GTTTGGAATA TAGAAACGGT TGTTGCAGTT
TGTTCAATTT TGTTGTCACT TTTGTGTATG GGTTTGAGAT AATTAAGGCA GATATCGTGA TTTCCAATTT TTTATTGTAA
AGCCTCTGAT ATCTATATTT ATGGCTGAAA GTTTGCGATT GGCTTGATTT GTAGATTGTC AATACATCTA TGTTTATCAC
ATCTTAATGA ATTTGATTCT ATTCATGTTA TTTTTATCTG ATTGAGAAAG TTTGGATCAC AATTGTTTTG GAAGAGTCAT
GACAAAATTT TACTAGATTT GTACGGTCTG TGATGAGCAT AAATCTGGCA TCTCCTGGTT CCATCTTTTA TCCAGGTTGT
GTCCTTAGTA ACCTAATTTT ATAAAGCCAA CAATGTGTGA AGCTTTTTGA TCTCCCTGCT CCACCCTTTC CAGCTCTTCC
TGCCCTGCCA TTTTGTCCTG ACTTTTCTGA GACTATTCGA AGTCAAATAA TTTTTAACTT CTATGCAGTG TGATGTTTGA
CAATAAATTT TTTGTCTAGA TGGATTGAGT TTTTCTTATT GAAATTTTAA TTAATTGTTA TCATAGTTGT CAATCAGAAA
AGCACTCCCA CAGTGCCTCA AAAAGTGAGA GGAGGGAGAA CCGAGTGTTC TTGTCATGGT GAATGGAGGA CGCTATTGTG
TCACTTTCTA ATTATAATGA TTTTTGCGGA AACTATGATT GGAGAAAGCC ATTGCTAAAG AGTATGTATA AATTGAATGT
GGAAAAACAC ATATACTGAT CTAGTTTTTG AGGAGAGTTG TTAGGAACTA ATACTGAAAT GGGAAAGAAA AGCTTGGTTT
TGTTGAATTC AATGCAAAGA ATGGAAAATG AGAGGAAGAT CTCTATTCCA AAGTTTTTGT CTTCACAAAA GGGTTCCCCT
TCACAAAAGA TTGATGCCAC AATTGGCTAT TCTTTAAAGT TGATCTGTTC CTTGCTTTTT ATGGATGGTG GTACCTTATC
CACTGCCTCA TTTGTATTCT TTCTTTCTAG AATAAACTTT CTCTTTTATT TAAATAGAAA AAGTTTCATC AACTTGTTCT
GAGATTGGCT TCTGTGTCAA ATTACTAATG CCTTTCTTTC CAGGCTCCTG AGCTTTATCT AGAAATTCGT CAGCATGGAT
TGGGTCAGCA GCAGCAGGCA GCAACAGCTG GATCTTCTAC ATCTTCGGCT ACAAAGGTAA TATTTCTGTC TTGTTTCCCT
GCGTTAACCT TGTGATATTG TATGAGTTTT TTGTTTTTTT GTATAGTTCT CGACCTTTTA TGAACAACTA ATATATATTT
TTCGCAATTT GTTAATGAAT TGATTTTTCT GAGGTTTAAT TTACCTTCAA ATTATCTTTC CATTAATTTA CTGTTGTCTG
ACGGAGGACA AAATCAAGGA TTGCCGATGC AGTGAAATAA AGGAGTTTGT TGAATCAAAT TTGCAAGTTG ATGGTTCTAA
ATGTTCACTT TTCTACGTTA AGTTTGATTC TTCTAGTGAA GTAGGAAGGG CTCATAGGTT TTACCATTAG TGCACCAAAT
TGAATTTGTA TAGATCTTAG TTACCTAATC AGTATATACA TGCTTTGAGA TAGATTGGAT ATGCATTTTA TTTGGAGAGT
CCAAGAGCCA AGTCCAACCC AAACAAGACA AATAGCAGTA AGCATGTCTT ATGCTTTGTA TGAGTTTTAT CACCTATTTG
TGGTTCTCTT TGTCAGACGC AGAAGAAAAA GAAGAGCAGT GATCTGAAGT ATGACATATT TGGATGGATA ATTCTGGCAG
TTGGCATTGT TGCATGGGTG GGATTCGCAA AATCGAACCT GCCTCCACCT CCTCCTCCAC CTCCTCGATA AGTGAAACCA
TTTGATTCTA TCTCATACAT TATTGATTAT TGAGAATGAT ATTTAATTTG GTTCAGTGCC GTTTGTTTAC CTTTTGACAG
CAGTAATGTT TGTAATGATG TAGCCATTGG CGTATCTTAT CCCTCATACG AAATTTTTTC CTACTGTGGG TTGAGCGGTT
AAATATGTCC GGCTTAGATC TTTGCTAGTT TTGCAGAATC AAAAGCATCG CCTTCAGTCA AGTATTGAAT ATAATAAGAA
TTTTACGCCA AGGTTTCGGT TTTTCATTTA TGGCTCCGCT TCAATAGTAT TGGTGCCAGT TTGGTAAATA GGCCTTATGA
CATGCTTTAA TAAATTTGTT ATTGAGAATT TAGTTTTGGA TCTGTATGGG AAAATTTCAC TTCCACTGTC TTTTATTGGA
ACGAAAAATA AGCAAAATGG AGAAGTCTTT TTAGAAGCTA AAATTGCGTA CCACCAAGTT AAAAATAAAG AAGATAGAGA
AGAGATATTT TTAACAAATA AGATTGTGTA AACTGATCTT AATTTTAGAA GTTCG

>Vigan.11G097000.01
TATCTAAAAT TGAGTAATGG TTCGAATGTA ATTTGAGGAA AGAGAGGGCA ATTTCAGGTC TCCACGTAGG TCATTAGCAG
CTACGCTGCC CTCATAAGAG CAGCTGCAGA TTTCCATTCT AAAACCCAAA ACCCTAAAAG CGAGACAAAG CTCCCAAAGT
ATCTGTTGCT CTCAAGCTGC CATGGATTTG CAACAGGGTG AGTTTGATCG CCTCTTGTTC TTCGAGCACG CTCGTAAGGC
TGCAGAAGCC GAATACATCA AGAACCCTAT AGATGCCGAC AACTTAACAC GATGGGGTGG AGCTTTATTA GAATTGTCTC
AGTTTCAGAA CTTTCCTGAG TCGAAGAAAA TGACCCAAGA GGCTATTTCG AAGCTGGAGG AGGCGCTTGA GGTGAATCCC
AAGAAGCATG ACACCCTTTG GTGCCTTGGA AATGCTCACA CCTCGATGGC ATTTTTAAAT CCAGATCAGG AGGAGGCAAA
GGTTTATTTT GACAAGGCAG CTCAGTACTT TCGACAAGCT GTTGATGAGG ATCCTTCAAA TGAACTTTAC CTTAAATCAT
TGGAAGTGGC GGCTAAGGCT CCTGAGCTTT ATCTAGAAAT TCGTCAGCAT GGATTGGGTC AGCAGCAGCA GGCAGCAACA
GCTGGATCTT CTACATCTTC GGCTACAAAG ACGCAGAAGA AAAAGAAGAG CAGTGATCTG AAGTATGACA TATTTGGATG
GATAATTCTG GCAGTTGGCA TTGTTGCATG GGTGGGATTC GCAAAATCGA ACCTGCCTCC ACCTCCTCCT CCACCTCCTC
GATAAGTGAA ACCATTTGAT TCTATCTCAT ACATTATTGA TTATTGAGAA TGATATTTAA TTTGGTTCAG TGCCGTTTGT
TTACCTTTTG ACAGCAGTAA TGTTTGTAAT GATGTAGCCA TTGGCGTATC TTATCCCTCA TACGAAATTT TTTCCTACTG
TGGGTTGAGC GGTTAAATAT GTCCGGCTTA GATCTTTGCT AGTTTTGCAG AATCAAAAGC ATCGCCTTCA GTCAAGTATT
GAATATAATA AGAATTTTAC GCCAAGGTTT CGGTTTTTCA TTTATGGCTC CGCTTCAATA GTATTGGTGC CAGTTTGGTA
AATAGGCCTT ATGACATGCT TTAATAAATT TGTTATTGAG AATTTAGTTT TGGATCTGTA TGGGAAAATT TCACTTCCAC
TGTCTTTTAT TGGAACGAAA AATAAGCAAA ATGGAGAAGT CTTTTTAGAA GCTAAAATTG CGTACCACCA AGTTAAAAAT
AAAGAAGATA GAGAAGAGAT ATTTTTAACA AATAAGATTG TGTAAACTGA TCTTAATTTT AGAAGTTCG

>Vigan.11G097000.01
ATGGATTTGC AACAGGGTGA GTTTGATCGC CTCTTGTTCT TCGAGCACGC TCGTAAGGCT GCAGAAGCCG AATACATCAA
GAACCCTATA GATGCCGACA ACTTAACACG ATGGGGTGGA GCTTTATTAG AATTGTCTCA GTTTCAGAAC TTTCCTGAGT
CGAAGAAAAT GACCCAAGAG GCTATTTCGA AGCTGGAGGA GGCGCTTGAG GTGAATCCCA AGAAGCATGA CACCCTTTGG
TGCCTTGGAA ATGCTCACAC CTCGATGGCA TTTTTAAATC CAGATCAGGA GGAGGCAAAG GTTTATTTTG ACAAGGCAGC
TCAGTACTTT CGACAAGCTG TTGATGAGGA TCCTTCAAAT GAACTTTACC TTAAATCATT GGAAGTGGCG GCTAAGGCTC
CTGAGCTTTA TCTAGAAATT CGTCAGCATG GATTGGGTCA GCAGCAGCAG GCAGCAACAG CTGGATCTTC TACATCTTCG
GCTACAAAGA CGCAGAAGAA AAAGAAGAGC AGTGATCTGA AGTATGACAT ATTTGGATGG ATAATTCTGG CAGTTGGCAT
TGTTGCATGG GTGGGATTCG CAAAATCGAA CCTGCCTCCA CCTCCTCCTC CACCTCCTCG ATAA

>Vigan.11G097000.01
MDLQQGEFDR LLFFEHARKA AEAEYIKNPI DADNLTRWGG ALLELSQFQN FPESKKMTQE AISKLEEALE VNPKKHDTLW
CLGNAHTSMA FLNPDQEEAK VYFDKAAQYF RQAVDEDPSN ELYLKSLEVA AKAPELYLEI RQHGLGQQQQ AATAGSSTSS
ATKTQKKKKS SDLKYDIFGW IILAVGIVAW VGFAKSNLPP PPPPPPR*