GBrowse Details

Vigan.11G088600.01

Basic Information:
Name: Vigan.11G088600.01
Multiple alignment
Variant Information
Position: Chr11:10917534..10921266 (+ strand)
Length: 3733
Functional Information:
Description: Similar to Uncharacterized protein. [I1N6V9, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.25,24.42,21.94,23.37,35.99,45.21,29.37,21.91
Arabidopsis thaliana homolog: AT4G35860.1
Automatic updates:
Name: NM_001255030 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ras-related protein RABB1b-like (LOC100797461), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:10917534..10917764 (+ strand)
Length: 231
Type: five_prime_UTR
Position: Chr11:10917765..10917810 (+ strand)
Length: 46
Type: CDS
Position: Chr11:10917903..10918042 (+ strand)
Length: 140
Type: CDS
Position: Chr11:10919469..10919551 (+ strand)
Length: 83
Type: CDS
Position: Chr11:10920073..10920277 (+ strand)
Length: 205
Type: CDS
Position: Chr11:10920389..10920457 (+ strand)
Length: 69
Type: CDS
Position: Chr11:10920770..10920862 (+ strand)
Length: 93
Type: CDS
Position: Chr11:10920863..10921266 (+ strand)
Length: 404
Type: three_prime_UTR

>Vigan.11G088600.01 class=Sequence position=Chr11:10917534..10921266 (+ strand)
CTAAATTAAA AGAAAAGAAA TATTAAATGA TATTCAAGAC GCATTAAAGA AACAAGTGAT ACAAATACGT CACTTCTTGC
TTTGGTTGGG AATCAAACCC ACCATTTTCA CTGTGCATCA CTCTCTTCCT TCCTTCTTCG TCTTATTCTC CAACCCACAC
TAAAGCCTTC CTATTTTTGT TCTTTTCTCT GTTTTGCTTT TTCCAAACGG CGTCGCTTCA GAGGTTCAGC GATGTCGTAC
GACTACCTAT TCAAGTACAT CATCATCGGC GACACAGGTT AGGTTCTTCT GTTCCCTCTT TCCTTTTCTT CTCGCAATTG
GGTCTCCGAA TCTCACTTCA AGTTTGGGTT TTTCTCCGGT GCCGTGCAGG TGTAGGGAAA TCGTGTCTGC TCCTCCAATT
CACTGATAAG AGGTTCCAAC CTGTTCATGA TCTCACCATT GGTGTTGAGT TTGGCGCTCG CATGGTCACA ATTGATTCTC
GACCCATCAA GCTTCAGATA TGGGATACTG TCAGTTCACC CTCTCTCCCT TTCTATCTCT TCCTCTATTT TACTTTTTTT
TAAAGTAAAA ATCTGTTGCT TAATTGTGTT TTTTTTTTAA TTACTATTTG TTAGATAGGT ATTTCAAATT TGGTGAGAAT
TGATCAAGGG TATGTGTATG TGCTAGAACA CTAAGTAAAA TAGTTGTGAT CACTGTTTAA TTTGTTTGGT TTTTTGTGGC
ATGTATGGTC TCATGCAGGA TCATCCAACA TTATATTCAA ATGCTAGATA CCTAGAATTA GGTGAAACTT TAAGAAATTG
GTTCTGGGTT TAGATTTGAC TTTGAGTTGA AACAAGTTTA CGCGTGTTTT AAGTTTGATT TTGGATGGAA ATGTTTGTTT
TTTCTGATTT TAGAATTGGT TTTTAAGTGA TGCGATATTG TTCAGATGTT TTTATCATAA AAGCAAGCTA GAAGAAAATA
ATATACAGTT TTTATTCTGA CGCGAAAGCT ACTTAAAGTT GCTTAAACTC AGTAAATTTT GGACCTATAA AACGTAGAAC
TGAACATGCC AAAGTTTATC GTTTCTATGT GATTCTGGAA AGTTCAAGGT GAAACCAAAG GCACATTAAG TAACTTTTGG
GTTGCATAGA AAATTTTGTT GCGAATTTTG CATAGTTTTT TAGAAAGTAA ATAGCTCAAA TATAAATCTC GAAATTTCAA
AATCAATTTT AATCATTATT GGTGTTACAG AATCAATTCT GGAAACGCAA GCCCAAACAA AATAAGTCTG TTTACTTTTT
TAATCTATTC TTTTATTCTT TGTCTTGATT GTATCATGGT AAATAGGAGT GCAGGGACAT GGTTAGGAAT AAGGGGTATG
TATATATACA GTAAAAGGGT ACTGGATTTG TGATTGTGAC AGAGAAATCG GAATGGAGAA TGATTATAAA CCGTTTTAGG
ATTGCAAATC TATAGTTGAA CTTATTCATG CAGATATATC CAACACAATC TATTATTTAT GTCTCAGGTT CTTAATGTTC
TTTATCTGTG GTGCTACTTA ATTTCTTTCT GTTTTTCATT GATTTATATA AGGTAGTCCT TGAAGTTCGT AGTTATTGAA
CCTTGCAATG ACTGACTACT GAAATTATGT CTGGTCGAGG CCAATTTAGT ATATAAAATT GACCCATTTG TCTGTGATTT
AGTTTGTTGT AAGGCTAAGC CTTGAATTAC ATTGATTGGC ATTGCATGGT GAAACCAAAT TGATGTCGCT CGTAATGAAT
GGTTTCATTA CTTCCTTTGA TCCACAACAT CGTGTATCGG TAGGATCTTA AAAAGATTAA AAAGTCTTAG TAGTGTTGAA
GATGGAATTC TTTTTTAATA TATTTTGTCA TGTCTAAACA AGGATGCTGT TTTCAACAAT ATTTAGGTAC TTATGCAGAA
CTTGTTTTAC TGTAGGCTGG GCAAGAGTCC TTTAGATCCA TCACAAGATC TTACTATAGA GGAGCAGCCG GAGCACTTCT
AGTTTATGAC ATTACAAGGT GGGTTGTGCT ATTTACAATT TGACATAGAG TTCACGGTGT GCATTTCTTT AGAATTATAT
TGAACAACAT ACCACCTTTG TTGTGGTATT TATTTACCAC TTTCATGAGT GCTAGGAATG CAATAGAAGT AAAATCCAGC
ATAATTGAAC CCAATTTCAT TCTAAAAACT ATTGAAGTTT TGGTGGCTAA CTGTAGCTAT ACTGTTACCT TCTCTTTTGT
CACTGATGGT TTCAATTCTT TTGAAGTAAA CATTAATGTC TTATTTTATT ATTAAAGTTT AATGTTTGAA CCACATGTGC
AGTGCTGGTA TGTATCCCTT GTTGCTTCCA TTGTGGCTCC CAAACAGTGT ACACTTTTTG TTTCATATAA TCAAATAAGT
ATAATGCCCA ATGATTATTT TCCCCCTTTC ATTTTTTTCT TTCTCGTATC TCTGGTGGGT GGTGGGGGTT GAGTATGAGG
TTTGTTCTTT TCTCAAAGTC CCTTCAACTG AAAACCAAAA GACTCTTTTT GTTGATCAGG AGAGACACAT TTAATCATTT
AGCTAGTTGG CTGGAAGATG CCCGGCAGCA TGCCAATCCT AACATGAGCA TCATGCTCGT AGGGAACAAG TGTGACCTGT
CTCATCGAAG AGCAGTGAGC AAAGAGGAGG GGGAGCAGTT TGCAAAAGAA AATGGACTTC TGTTTTTGGA GGCTTCTGCT
AGGACTGCTC AAAATGTGGA AGAGGTGATG CATCTCAATC AATATCAACC GAGATGTAGC ACTATGCTTT GCTACCTCAA
GAATATTTTG TGAAATTTAT TAACCATGGA AAGCCACTTA CTGCTCATTC TGCAGGCTTT TATAAGGACT GCTGCAAAGA
TTCTTCAGAA TATTCAGGAA GGTGTCTTTG ATGTGTCGAA TGAGGTAAAT ATCTATTATG TTCCGTGCAA AAAGAGGTGG
ATGGTTTCTT AAGAATGGAT GTTTTCATCA TTTTATTGTC ATAATAGGGT ATAAGAAATT GACATTTTCA TTTCATTTGC
TAATTACCAC TGTATCATCT GAGATCTAGG TTGCTCTGAT GATGGTTGGT TTCACCAAAA TGAGTTAAAT ATAGAAATGA
AGCATTGTTG CTTTTTCTTC TTTCTTGTAA TAAACAACAT ATAACATAAA ATGGAACTTT CCATGCATCC TTAGCTGCCC
GTTTTGGCTA GATCACCAAT GAATCTATTG TTGCAGTCAT CTGGTATAAA AGTTGGCTAT GGACGTCCCC AAGGTCAATC
AGGAGGCAGA GATGGAACTG TTTCTGCAAG GGGTGGGTGT TGTAACTGAT TGAAGGGAAA CCAAATCTCA ATCTAATCCT
TTTTTGCATC TATTTCTGCC TCCTGTCTCA ACTGAGTGTA TACTCTTAGA CTTGACATGG AACTTTTGGA GTACCCTGCA
ACTTCCTGTA TAGATCTAAT CTCAAAGGTG TTCTTGGAAC AGATTTGACT GCATAGTTTT CAGATCTACT AAATGTTTAA
TGATTGGCTG TTATGTTCAA AATGCCAGTT TCTTATAGTT TTGTTGTTAT CTGCTACAAT ATTTACATGT TGTAGCTTTT
TAGTAGGTAC TACCCAATGT TCCACTCAAT GTTAAACATG CATGAAGTTG TGTGGGTCCA CCATGTGTAC AATTTATCAA
TCTTCAAAGA ATGTCTTTAT ATATGAAAAA GATGAATGGG GTATCCTAGA GAT

>Vigan.11G088600.01
CTAAATTAAA AGAAAAGAAA TATTAAATGA TATTCAAGAC GCATTAAAGA AACAAGTGAT ACAAATACGT CACTTCTTGC
TTTGGTTGGG AATCAAACCC ACCATTTTCA CTGTGCATCA CTCTCTTCCT TCCTTCTTCG TCTTATTCTC CAACCCACAC
TAAAGCCTTC CTATTTTTGT TCTTTTCTCT GTTTTGCTTT TTCCAAACGG CGTCGCTTCA GAGGTTCAGC GATGTCGTAC
GACTACCTAT TCAAGTACAT CATCATCGGC GACACAGGTG TAGGGAAATC GTGTCTGCTC CTCCAATTCA CTGATAAGAG
GTTCCAACCT GTTCATGATC TCACCATTGG TGTTGAGTTT GGCGCTCGCA TGGTCACAAT TGATTCTCGA CCCATCAAGC
TTCAGATATG GGATACTGCT GGGCAAGAGT CCTTTAGATC CATCACAAGA TCTTACTATA GAGGAGCAGC CGGAGCACTT
CTAGTTTATG ACATTACAAG GAGAGACACA TTTAATCATT TAGCTAGTTG GCTGGAAGAT GCCCGGCAGC ATGCCAATCC
TAACATGAGC ATCATGCTCG TAGGGAACAA GTGTGACCTG TCTCATCGAA GAGCAGTGAG CAAAGAGGAG GGGGAGCAGT
TTGCAAAAGA AAATGGACTT CTGTTTTTGG AGGCTTCTGC TAGGACTGCT CAAAATGTGG AAGAGGCTTT TATAAGGACT
GCTGCAAAGA TTCTTCAGAA TATTCAGGAA GGTGTCTTTG ATGTGTCGAA TGAGTCATCT GGTATAAAAG TTGGCTATGG
ACGTCCCCAA GGTCAATCAG GAGGCAGAGA TGGAACTGTT TCTGCAAGGG GTGGGTGTTG TAACTGATTG AAGGGAAACC
AAATCTCAAT CTAATCCTTT TTTGCATCTA TTTCTGCCTC CTGTCTCAAC TGAGTGTATA CTCTTAGACT TGACATGGAA
CTTTTGGAGT ACCCTGCAAC TTCCTGTATA GATCTAATCT CAAAGGTGTT CTTGGAACAG ATTTGACTGC ATAGTTTTCA
GATCTACTAA ATGTTTAATG ATTGGCTGTT ATGTTCAAAA TGCCAGTTTC TTATAGTTTT GTTGTTATCT GCTACAATAT
TTACATGTTG TAGCTTTTTA GTAGGTACTA CCCAATGTTC CACTCAATGT TAAACATGCA TGAAGTTGTG TGGGTCCACC
ATGTGTACAA TTTATCAATC TTCAAAGAAT GTCTTTATAT ATGAAAAAGA TGAATGGGGT ATCCTAGAGA T

>Vigan.11G088600.01
ATGTCGTACG ACTACCTATT CAAGTACATC ATCATCGGCG ACACAGGTGT AGGGAAATCG TGTCTGCTCC TCCAATTCAC
TGATAAGAGG TTCCAACCTG TTCATGATCT CACCATTGGT GTTGAGTTTG GCGCTCGCAT GGTCACAATT GATTCTCGAC
CCATCAAGCT TCAGATATGG GATACTGCTG GGCAAGAGTC CTTTAGATCC ATCACAAGAT CTTACTATAG AGGAGCAGCC
GGAGCACTTC TAGTTTATGA CATTACAAGG AGAGACACAT TTAATCATTT AGCTAGTTGG CTGGAAGATG CCCGGCAGCA
TGCCAATCCT AACATGAGCA TCATGCTCGT AGGGAACAAG TGTGACCTGT CTCATCGAAG AGCAGTGAGC AAAGAGGAGG
GGGAGCAGTT TGCAAAAGAA AATGGACTTC TGTTTTTGGA GGCTTCTGCT AGGACTGCTC AAAATGTGGA AGAGGCTTTT
ATAAGGACTG CTGCAAAGAT TCTTCAGAAT ATTCAGGAAG GTGTCTTTGA TGTGTCGAAT GAGTCATCTG GTATAAAAGT
TGGCTATGGA CGTCCCCAAG GTCAATCAGG AGGCAGAGAT GGAACTGTTT CTGCAAGGGG TGGGTGTTGT AACTGA

>Vigan.11G088600.01
MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTI DSRPIKLQIW DTAGQESFRS ITRSYYRGAA
GALLVYDITR RDTFNHLASW LEDARQHANP NMSIMLVGNK CDLSHRRAVS KEEGEQFAKE NGLLFLEASA RTAQNVEEAF
IRTAAKILQN IQEGVFDVSN ESSGIKVGYG RPQGQSGGRD GTVSARGGCC N*