VIGGS:GBrowse

Vigan.11G087100.01

Basic Information:

Name:	Vigan.11G087100.01 Multiple alignment Variant Information
Position:	Chr11:10663524..10665249 (+ strand)
Length:	1726

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MLR2, Glycine max]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	Ubiquitin domain (IPR000626)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.23,6.80,4.18,0.69,4.69,3.63,6.23,5.23
Arabidopsis thaliana homolog:	AT5G14360.1

Automatic updates:

Name:	NM_001252739 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100815369 (LOC100815369), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr11:10663524..10663736 (+ strand)
Length:	213
Type:	five_prime_UTR

Position:	Chr11:10663737..10663995 (+ strand)
Length:	259
Type:	CDS

Position:	Chr11:10664711..10664937 (+ strand)
Length:	227
Type:	CDS

Position:	Chr11:10664938..10665249 (+ strand)
Length:	312
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.11G087100.01 class=Sequence position=Chr11:10663524..10665249 (+ strand)
AGAAAAGACA ATTTGCCCAT ATTGTCCAAT GTCTCCCCAT GTGTTCCTTC AACTCTTGCT TTTTTGCAAC ACTAGGGCGG
CTTCTATTTT ATTCATGTTC TTCTTTCAGC CTTTTCAACA CTTTCCCTCT ATTATATAAG GGCCTAACCT CATCACCTTC
TCTTTGCTCC TTCACTTTCC AAACCAAAGA AGAGATCAAA GAGTGTGAGA AAGATGATGA AGTTGAGGTC AAAGAGGTTT
TCAAGAAGCA GCTCCAAGCT TGGCAACAAT GGCAGCAAAG GAGCAGCATC ATCCCCAGAA AAGGATGCCA AAAACAATGG
TGAAATCAAG TGGGAACTTA GGCCTGGTGG CATGCTTGTT CAGAAGAGGG AGAGTAATAA TAACCAAAGT TCTGGAGAGG
GAGTCATTGC TGTTAGAGTC TCCACTGTCT CACAATGGCA TGACATTTCC ATTGATGCCA CTTCAACTTT TGGTAATGCT
CTTCTAATGA AATATCATTT TAGTTACAAA TACTTTTATT GAGTTTGGTT TCACATTATA TATATAAGAA AAAAGATTCA
AACATCTGTT ACTTCAAAGT TTTGGGTTTA AAAAATGTAT TAATTAAGTT TCTTTTATAT AAAATGTTTT TAGTTTATTG
GTCAACAATC TCCTTAAAGT TTTCCCTAAT GAAATTTGTT TTTTCTTATC AATTTGTTGT TCATGCATAC CCTTTTCAAA
GTCTACTCCA AATTTTCATT TTTAGTTAAA AGGGTGTTTT TATTAATAAA AAAGATTCAA AATTTTGGTT TATAATGTTG
ACTTTGAAAT CATTAGTTTT TTTCTTTTTG GTATTTCTCT TTAAAATACT TGACCTTTAA TCCTTTTCCC CTTTCAGACA
AAGGTAATTA ATGTATGGTG ATTAATGATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TATATAACAT TCTAAAAGTT GGAGACCAAA ACAAAAATTC ATAAGGGTGG
ATAGAGGGAT GAATCATTAA ATCAGATAAG ATACTGAGAA TAAGTTCTCT AAATCAGAGA TCAGAAATGA TTAAACTTTT
CATTTCTTGA AAATTGGAGA GACCACAGAG ATTTTGATAC TAATTTGTGA ATGATAAAAA CTTGCAGGGG AACTAAAACT
GATTTTGTCA CTGGTGACAA ATTTGGATCC CAGAGAGCAG AGGCTTCTGT TCAAGGGCAA AGAGAGGGAG GACAGTGAAT
TCCTTCACAT GGTTGGGGTG AGAGACAAGG ACAAGGTTCT AATGCTTGAG GATCCTGCAA CAAAGGAGAT GAAGCTTCTT
GGCATGGCAA GAGGCCAACC CATTAACAAT ACTTGCTGTA CCATCGCTGT ATGAACACCC TTTGATTTCA TCAAACTTCT
TGTGAATTAG CACTAACCAG AAAAGAAAAA AAAAACAAAA AGTGAAGTAA AGTTTAATGT AACGATATGG TCTTTCTTCA
CTTTTGTTTG TCTTAGAATA GAAACTTAAT TATGTACTTA TCTGTTGGGT AGAACCTCCC TTCATTTAAA AATGTACAAC
ATGATGCAAT GCCATGTCAT TTTGCAGAGG TTTCTCTTGT AATTCAAGTA TCCATTCTCT CGTATGTTTT TTGTACTCTC
CTTCTCTAGT GTTTTTAAAA TATATTTATT TTGATACATT AAAAAA

[show][hide][copy]TRANSCRIPT

>Vigan.11G087100.01
AGAAAAGACA ATTTGCCCAT ATTGTCCAAT GTCTCCCCAT GTGTTCCTTC AACTCTTGCT TTTTTGCAAC ACTAGGGCGG
CTTCTATTTT ATTCATGTTC TTCTTTCAGC CTTTTCAACA CTTTCCCTCT ATTATATAAG GGCCTAACCT CATCACCTTC
TCTTTGCTCC TTCACTTTCC AAACCAAAGA AGAGATCAAA GAGTGTGAGA AAGATGATGA AGTTGAGGTC AAAGAGGTTT
TCAAGAAGCA GCTCCAAGCT TGGCAACAAT GGCAGCAAAG GAGCAGCATC ATCCCCAGAA AAGGATGCCA AAAACAATGG
TGAAATCAAG TGGGAACTTA GGCCTGGTGG CATGCTTGTT CAGAAGAGGG AGAGTAATAA TAACCAAAGT TCTGGAGAGG
GAGTCATTGC TGTTAGAGTC TCCACTGTCT CACAATGGCA TGACATTTCC ATTGATGCCA CTTCAACTTT TGGGGAACTA
AAACTGATTT TGTCACTGGT GACAAATTTG GATCCCAGAG AGCAGAGGCT TCTGTTCAAG GGCAAAGAGA GGGAGGACAG
TGAATTCCTT CACATGGTTG GGGTGAGAGA CAAGGACAAG GTTCTAATGC TTGAGGATCC TGCAACAAAG GAGATGAAGC
TTCTTGGCAT GGCAAGAGGC CAACCCATTA ACAATACTTG CTGTACCATC GCTGTATGAA CACCCTTTGA TTTCATCAAA
CTTCTTGTGA ATTAGCACTA ACCAGAAAAG AAAAAAAAAA CAAAAAGTGA AGTAAAGTTT AATGTAACGA TATGGTCTTT
CTTCACTTTT GTTTGTCTTA GAATAGAAAC TTAATTATGT ACTTATCTGT TGGGTAGAAC CTCCCTTCAT TTAAAAATGT
ACAACATGAT GCAATGCCAT GTCATTTTGC AGAGGTTTCT CTTGTAATTC AAGTATCCAT TCTCTCGTAT GTTTTTTGTA
CTCTCCTTCT CTAGTGTTTT TAAAATATAT TTATTTTGAT ACATTAAAAA A

[show][hide][copy]CDS

>Vigan.11G087100.01
ATGATGAAGT TGAGGTCAAA GAGGTTTTCA AGAAGCAGCT CCAAGCTTGG CAACAATGGC AGCAAAGGAG CAGCATCATC
CCCAGAAAAG GATGCCAAAA ACAATGGTGA AATCAAGTGG GAACTTAGGC CTGGTGGCAT GCTTGTTCAG AAGAGGGAGA
GTAATAATAA CCAAAGTTCT GGAGAGGGAG TCATTGCTGT TAGAGTCTCC ACTGTCTCAC AATGGCATGA CATTTCCATT
GATGCCACTT CAACTTTTGG GGAACTAAAA CTGATTTTGT CACTGGTGAC AAATTTGGAT CCCAGAGAGC AGAGGCTTCT
GTTCAAGGGC AAAGAGAGGG AGGACAGTGA ATTCCTTCAC ATGGTTGGGG TGAGAGACAA GGACAAGGTT CTAATGCTTG
AGGATCCTGC AACAAAGGAG ATGAAGCTTC TTGGCATGGC AAGAGGCCAA CCCATTAACA ATACTTGCTG TACCATCGCT
GTATGA

[show][hide][copy]PROTEIN

>Vigan.11G087100.01
MMKLRSKRFS RSSSKLGNNG SKGAASSPEK DAKNNGEIKW ELRPGGMLVQ KRESNNNQSS GEGVIAVRVS TVSQWHDISI
DATSTFGELK LILSLVTNLD PREQRLLFKG KEREDSEFLH MVGVRDKDKV LMLEDPATKE MKLLGMARGQ PINNTCCTIA
V*