GBrowse Details

Vigan.11G063700.01

Basic Information:
Name: Vigan.11G063700.01
Multiple alignment
Variant Information
Position: Chr11:7295611..7300676 (+ strand)
Length: 5066
Functional Information:
Description: Similar to Developmental protein SEPALLATA 2-like protein. [T2DPG6, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,0.02,81.70,0.07,0.04,63.69,0.12,0.42
Automatic updates:
Name: NM_001348519 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor SEP1 (SEP1), transcript variant 2, mRNA.
PubMed ID: 19289160 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:7295611..7296031 (+ strand)
Length: 421
Type: five_prime_UTR
Position: Chr11:7296032..7296216 (+ strand)
Length: 185
Type: CDS
Position: Chr11:7298662..7298740 (+ strand)
Length: 79
Type: CDS
Position: Chr11:7299141..7299205 (+ strand)
Length: 65
Type: CDS
Position: Chr11:7299426..7299525 (+ strand)
Length: 100
Type: CDS
Position: Chr11:7299695..7299736 (+ strand)
Length: 42
Type: CDS
Position: Chr11:7299817..7299858 (+ strand)
Length: 42
Type: CDS
Position: Chr11:7300107..7300243 (+ strand)
Length: 137
Type: CDS
Position: Chr11:7300326..7300431 (+ strand)
Length: 106
Type: CDS
Position: Chr11:7300432..7300676 (+ strand)
Length: 245
Type: three_prime_UTR

>Vigan.11G063700.01 class=Sequence position=Chr11:7295611..7300676 (+ strand)
CTGCACTCCA TTTTATGGTG GAGATTGGAA GAAGATAAAA GAGAAAAGAA AAAAAAGAGA AGATTTGAGG ATGAAAATGA
TGAGTTAGCA AAGAGAGATA AACACTTACA AGTTACAAGT ATTGTGTAGT TGTTAGCTTT GTGATGTTTC TCTCTCTTGA
TTTTTTCTCT CTCTAGGGTT CCAAGTTTTG AACTTGAGAA CTCTGTCTTG TTTTTCACAA ATTTGGCTGC ACTTGGGTAC
TGACCCAGAA AAGAAGGTTC AACAGGTACC TAAGAGAAGG AAGGGGTGGA AAAAAATAGA AACTGTACGT ATGAAAGAAG
AAATAAAGAG ATAAATAAGA AAAGGGTAAA TTTTGAATAA GAGTGAGGAA TAGAATAACA CAATAATAGT ATTAATATTG
ATAAGAATCA AGTGGGAAAA TATGGGGAGG GGAAGAGTGG AACTCAAAAG GATAGAGAAC AAGATAAACA GGCAGGTAAC
GTTTGCAAAG AGGAGAAATG GCCTTCTCAA GAAAGCCTAT GAGCTTTCTG TTCTCTGTGA TGCTGAGGTT GCCCTTATCA
TCTTTTCCAC CCGTGGCAAG CTTTATGAAT TTTGCAGCAG TTCAAGGTAT GTCTTTTTTT CGTTTCTGCA CTCATCAAAT
CATCTCTTAT TTAATCACTT TCATCTTTCT TTTATGTCTT TTATGTATAC CCTTTGGTTT AATTATATGT TTGAGAAGAT
CAGTATTTTT ATTTATTTTC CTTGTTTTCT TTTTTAATAT TCATCATAGC TGCTTGAATC TCATTTCTAA GTTTGTGGAT
TCTGTGAGTT CTTCTGGCCT GAGAAGAACT TTCATGTTTC TCTTTCCTAC CTTTTTTTTC TTATCTCTTT CCAATGGAGT
TGAAGAAATT AATCAATCTT TCGGCTCTGG TTTGGTCTTT TGAATGTAAG GTTGTGAGAT CTGGTGATGC AGTTCATGAT
CTGAAAAATA AGTCATGTTT TATTTTCCTG TACGGAAAAT TTTGGTGGAT TACCTCTTCT TTTATGTTTT CTCTTCCCCC
ACATGCTTTG AGGGGTTTCT GCGTGATTCA ATGTAATTTC TTTTCCTGCT TTGACTCTTT TTGTTCACCA AGAAGGCTAA
TGGATCTGTG TTTTTTCGTA TTAAGATGAT TTTGTTTGTT TTCTTGGTTT TATTTTTCCT TAAAAGTTTG GTTATATCTA
TGTATGACCA AGATGTATTA GCAGCAGTAC TTGATTGTCC TGAAATGAAG TTCTATGACA GCTTGAACAC ATCTTAAGTC
CAATGAAACA AGGACAGAAT GTAAGCATGT AGTGTGCTGC ACCAAAAACA AATAAACACT GTTTCTTCAC TCTAAAACAA
ATAGTTCGAC ATTTGGAAAG CAATAAAGGG TGTTTTATTT CATCACCTTG CCACTGTTTA TTATCAGTGT ACGGGGACCT
TTTCCCTGAA ATTGCTGCAT TTAATAGTTT TTTTTTCATT ATATCTATCT ATATATCTAT ATAACCATAT AATATAAATA
TATACAAAAT CATTTTAGTA TATTTTCCAT GTATAATTTC TATTTTTTTT TCTTCACTTT ATGTTAACTA ATTATACTTA
GTTGAAATTT TATCGTGTGT CAATGTTATA CCTCACTATT AAAGCAAAGT ACTTCACTAA TGAATTCATT AGTACTTAGG
TTTTATGAGT GTATCTCATT GACGTTCAAT GCTGAGAAAG TTTTCATGTT GAACATTTAA TGACCACAAA TTAAACCGTG
TTATTGATGG CTTCTCTTAA TTTTTATGGA TTTCTCTATC CTCTGGCGGG GAATTAGACA TTAAGAATGA ATTTGTTGTT
GAAATAAATT CTCACACAAA CGTGTGCTTT GTCATAGTAT CAGATCATTT ATATGCACAA CAGATTGATT TTAAAGGTTG
TTTTTGTCAT CAATGTGATT ATATTGCTTC ACTGCCATCA AAGCTTGAAG AATTCAGTGT TTGTAGGGGA TTAAAGGTTG
GATATATGAG TTGACAAAGA AAAAGCCTAC ATAACTTTGG ATATAACCCT ATTTATTGGC AATTAGACAC TAATTCAGTG
CAATATTATT GAAATAATTT TTTTTATTCA AATTCTGTTT ATTTAACCTG CCTCTATAAA TCATGCTATC CAACAGTAGC
TTTTGTATAA ATAATACTAT TTATGATTTT ATTAAGTTTT GACACAACTC CATGAATATA TGTGTTTTCA TTAAAAAAAG
TTGACTTTTT ATTCTGGAAT TAGTAAAAAA ATCAAATAAT TTTTATATCT TCTACTTCTA TACTAATTTA AAAACCGATA
TAAAAAGATT TTTTTAACGT AATAATATGT ACATGCATGA ATTTGGGTTT AACTGTAACT ACAAGGTTTG AATATAATTC
ATCATATCTA GCACTTGTAT TCTCTCTTGT TTTATCATGC TGACCATTAA AATGAGTAAA TTATATTTTA AAAAAAATTC
ATGAGTTCTA TATTTATCTT TTTTTTTTTT TATAAAGTTG CCCATAAAAG TACCTTTTCA TAGATCTTGA TGTCTTTTTG
GTCTAAGCTC TGACTAGTCT GATGTTCTAA CTACCCATTG TATTGCTACA AAGATCGAGT GAATCAATTC AGGGAAATAT
ACAGAAACTT TTTCTTTCTT TTTTCTTTTT TAATCAACAG ATTATATACT CAATTCCACG TGCAATTTTG TATCTCAGAT
AATGGAAATT TTGCAGTTGT GTCAACTTTT TTCTTCAAAA TTTGCCCTAG AAATCAAGGT CCTGATATAT TATATAGTAT
TTTCTGCAGC CTTGTTATGT TGCATTTCAT TACCAACTAT CATGCATTAG TTTAGGAAAG TAGTAAGAAA ATTGTAGATT
TTTACTTTAT AATTTGAAAA CCATTTTATT TGATTTTTTT ATCTTGGAAC ATCCAAGGTA AGTGTGATTT AGATGAATAA
TAGAATATCT AAGCTATAGT CTTGTATGAC TAACTATTCA TACACCGTCA TCATTTTTAC TGATTCTTCC TTTCTTTTCT
TGAATCTGCA GCATGCTCAA AACACTTGAA AGGTACCAAA AGTGCAGCTA TGGTGCAGTT GAAGTCAGCA AACCTGCCAA
AGAGCTTGAG GTATGAAATA ATACTTTTTG TTCAGAAATA ACAGCTGTTT AAGCTTTATA ATAATGAACT TTAAAGTATT
AAATAATTTT TTTGTAATTT GTTTCTAAAT ATTTATTGAG AGAACATTTG CATTTATTAC AGATAAAAGT AATGTATTTT
TCAAGAAAGG GATTATTTTA GTAAAATTGT TTTACTAAAT AATATGTTTG TTGTTGTTCT TAATGGTATG AAGTTATTAT
AGGATGAAGG TAGTGTGCAT TACAGAAATA ACATCTCATA AATTTTCACT TTAGGAAAGT TTTGTTAATT GCAAGAACTT
TGATTTCCAA CATATTAAAA TATATATTAT GCTTTCCATT AAATATGGCT AGGCACTCTG TTACTCTTCA TTTGTCATTT
GCTTTTGTAG CAGAGCAGCT ATCGTGAGTA CTTGAAGCTC AAAGGAAGAT TTGAATCTCT TCAGAGGACC CAAAGGTGAA
TTTCATGAGA AAGTATTTCG AAAAACTCCT TTCAAATTTA GTACTAAACC TATAACTTGG CCTGTACTCT TTTAACTTTT
GTGGGTTAAG GTTTGAGAAA ACTGTCTTCC ATTCAGTTAG TCATCATTAT TAAATTTTTC GTATTTTTCA AAAAAGGTTT
ACCATTTGCA TTAGTAGTGT TTTGATTAAG ACCATGTTCT TGTTCCATGC TGCAGAAACC TTCTAGGTGA AGACTTGGGC
CCATTAAATA CCAAAGAACT TGAGCAGCTT GAGAGGCAGC TAGATTCATC TCTCAAGCAA GTGAGGTCGA CAAAGGTAAA
AAAATTATAA CCTTTTATGT TCTATACAAT GGTAAACTTG GAACATGTTA TTCATATGGT CGGAAAAGCT AATTAAAGAG
TCTAATGTTC CCTTATGAGA TGTTCCCTTA TGAAAGCAGA TTACTAGTTT TCTGACACTA TATATCTGGA ACATTACTTT
GCAGACTCAA TTCATGCTGG ACCAGTTAGC TGATCTTCAA AATAAGGTAT ATATAGTGTT AGCATAGTCA TAGGAAAAAC
AAAATTTATG TTTGGCTAAC ACTTTCAAGC TATTGTTTGC ATACAGGAGC AGATGTTGGT AGAAGCAAAC AGAGCTTTGA
CCATGAAGGT AACATTAAAC ACTATCCATA AAGTTCATCC TACAACAAGC AATAATAAAA ACCTTATCAA TGATTATGTA
TTGATATTAC TGTTCTTGTT GTTCTGTCGC ATAATGTGAT TGTTCACTTG TTTTTAATAC TTTACAAAAT GGAAACTCTA
TTCAAAAGTG TTTGATGAAA GTGGTAACAC TATCTTTCTT CCATTCACAT TAATCTCCTC CAATGATGAT TTGGTTCATG
GCTACTATGT TGGCAGCTGG ATGAAATCAA TTCAAGAAAC CAGTATAGGC AAACATGGGA AGCTGGCGAT CAAAGTATGC
CGTATGGTAC TCAGAATGCT CATTCTCAAG GCTTCTTCCA GCCCTTGGAG TGCAACCCTA CATTGCAGAT AGGGTATAAT
ATACAATCAT TTTTCATGTA TTTTTGGGCT GAGGGTGATT TTGAATTGTA TTTTAATGCT TGTGCCTTGA TGCAGTTCTG
ACTACAGGTA CAACCCTGAA GCCTCAGATC AGCTAACTGC CACAACTCAA GCTCAACAAG TTCAACAAGT GAACGGTTTT
ATTCCTGGAT GGATGCTTTG AACTGAGCTA AGTATTTAGC TGGCTACATA AATAAAATTA GCAGACACCT AAGGCCAAAG
TCAAAATGCC TCTTGGTGTT GGAAATGTGT AAATGCTGCT TGTGCTTCTG TTATTTATTT TGGCATAAAA ACAGCAGTGA
CTGACTTAAA ACTATTAAAA CTTTAGCCAT TGACTTTTGG CTTGTAAGAA GATTACAGTA TGTTGAATAT CTTTGAAGGA
CTAGTGTTAT CTGACTGAAT GACCAG

>Vigan.11G063700.01
CTGCACTCCA TTTTATGGTG GAGATTGGAA GAAGATAAAA GAGAAAAGAA AAAAAAGAGA AGATTTGAGG ATGAAAATGA
TGAGTTAGCA AAGAGAGATA AACACTTACA AGTTACAAGT ATTGTGTAGT TGTTAGCTTT GTGATGTTTC TCTCTCTTGA
TTTTTTCTCT CTCTAGGGTT CCAAGTTTTG AACTTGAGAA CTCTGTCTTG TTTTTCACAA ATTTGGCTGC ACTTGGGTAC
TGACCCAGAA AAGAAGGTTC AACAGGTACC TAAGAGAAGG AAGGGGTGGA AAAAAATAGA AACTGTACGT ATGAAAGAAG
AAATAAAGAG ATAAATAAGA AAAGGGTAAA TTTTGAATAA GAGTGAGGAA TAGAATAACA CAATAATAGT ATTAATATTG
ATAAGAATCA AGTGGGAAAA TATGGGGAGG GGAAGAGTGG AACTCAAAAG GATAGAGAAC AAGATAAACA GGCAGGTAAC
GTTTGCAAAG AGGAGAAATG GCCTTCTCAA GAAAGCCTAT GAGCTTTCTG TTCTCTGTGA TGCTGAGGTT GCCCTTATCA
TCTTTTCCAC CCGTGGCAAG CTTTATGAAT TTTGCAGCAG TTCAAGCATG CTCAAAACAC TTGAAAGGTA CCAAAAGTGC
AGCTATGGTG CAGTTGAAGT CAGCAAACCT GCCAAAGAGC TTGAGCAGAG CAGCTATCGT GAGTACTTGA AGCTCAAAGG
AAGATTTGAA TCTCTTCAGA GGACCCAAAG AAACCTTCTA GGTGAAGACT TGGGCCCATT AAATACCAAA GAACTTGAGC
AGCTTGAGAG GCAGCTAGAT TCATCTCTCA AGCAAGTGAG GTCGACAAAG ACTCAATTCA TGCTGGACCA GTTAGCTGAT
CTTCAAAATA AGGAGCAGAT GTTGGTAGAA GCAAACAGAG CTTTGACCAT GAAGCTGGAT GAAATCAATT CAAGAAACCA
GTATAGGCAA ACATGGGAAG CTGGCGATCA AAGTATGCCG TATGGTACTC AGAATGCTCA TTCTCAAGGC TTCTTCCAGC
CCTTGGAGTG CAACCCTACA TTGCAGATAG GTTCTGACTA CAGGTACAAC CCTGAAGCCT CAGATCAGCT AACTGCCACA
ACTCAAGCTC AACAAGTTCA ACAAGTGAAC GGTTTTATTC CTGGATGGAT GCTTTGAACT GAGCTAAGTA TTTAGCTGGC
TACATAAATA AAATTAGCAG ACACCTAAGG CCAAAGTCAA AATGCCTCTT GGTGTTGGAA ATGTGTAAAT GCTGCTTGTG
CTTCTGTTAT TTATTTTGGC ATAAAAACAG CAGTGACTGA CTTAAAACTA TTAAAACTTT AGCCATTGAC TTTTGGCTTG
TAAGAAGATT ACAGTATGTT GAATATCTTT GAAGGACTAG TGTTATCTGA CTGAATGACC AG

>Vigan.11G063700.01
ATGGGGAGGG GAAGAGTGGA ACTCAAAAGG ATAGAGAACA AGATAAACAG GCAGGTAACG TTTGCAAAGA GGAGAAATGG
CCTTCTCAAG AAAGCCTATG AGCTTTCTGT TCTCTGTGAT GCTGAGGTTG CCCTTATCAT CTTTTCCACC CGTGGCAAGC
TTTATGAATT TTGCAGCAGT TCAAGCATGC TCAAAACACT TGAAAGGTAC CAAAAGTGCA GCTATGGTGC AGTTGAAGTC
AGCAAACCTG CCAAAGAGCT TGAGCAGAGC AGCTATCGTG AGTACTTGAA GCTCAAAGGA AGATTTGAAT CTCTTCAGAG
GACCCAAAGA AACCTTCTAG GTGAAGACTT GGGCCCATTA AATACCAAAG AACTTGAGCA GCTTGAGAGG CAGCTAGATT
CATCTCTCAA GCAAGTGAGG TCGACAAAGA CTCAATTCAT GCTGGACCAG TTAGCTGATC TTCAAAATAA GGAGCAGATG
TTGGTAGAAG CAAACAGAGC TTTGACCATG AAGCTGGATG AAATCAATTC AAGAAACCAG TATAGGCAAA CATGGGAAGC
TGGCGATCAA AGTATGCCGT ATGGTACTCA GAATGCTCAT TCTCAAGGCT TCTTCCAGCC CTTGGAGTGC AACCCTACAT
TGCAGATAGG TTCTGACTAC AGGTACAACC CTGAAGCCTC AGATCAGCTA ACTGCCACAA CTCAAGCTCA ACAAGTTCAA
CAAGTGAACG GTTTTATTCC TGGATGGATG CTTTGA

>Vigan.11G063700.01
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS SSMLKTLERY QKCSYGAVEV
SKPAKELEQS SYREYLKLKG RFESLQRTQR NLLGEDLGPL NTKELEQLER QLDSSLKQVR STKTQFMLDQ LADLQNKEQM
LVEANRALTM KLDEINSRNQ YRQTWEAGDQ SMPYGTQNAH SQGFFQPLEC NPTLQIGSDY RYNPEASDQL TATTQAQQVQ
QVNGFIPGWM L*