GBrowse Details

Vigan.11G051900.01

Basic Information:
Name: Vigan.11G051900.01
Multiple alignment
Variant Information
Position: Chr11:5896882..5899586 (- strand)
Length: 2705
Functional Information:
Description: Similar to lamin-like protein-like. [XP_004489434.1, Cicer arietinum]
GO: Molecular Function: copper ion binding (GO:0005507)
Molecular Function: electron carrier activity (GO:0009055)
InterPro: Plastocyanin-like (IPR003245)
Cupredoxin (IPR008972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.80,15.93,62.78,28.24,86.31,89.63,77.33,61.43
Arabidopsis thaliana homolog: AT5G15350.1
Automatic updates:
Name: NM_001250228 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cupredoxin domain-containing protein (LOC100305564), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:5896882..5897340 (- strand)
Length: 459
Type: three_prime_UTR
Position: Chr11:5897341..5897678 (- strand)
Length: 338
Type: CDS
Position: Chr11:5899215..5899407 (- strand)
Length: 193
Type: CDS
Position: Chr11:5899408..5899586 (- strand)
Length: 179
Type: five_prime_UTR

>Vigan.11G051900.01 class=Sequence position=Chr11:5896882..5899586 (- strand)
TTAAATAAGA AAAAAAAGAC AACTTTCACA CAACAGATGC TATTTAAAAA ACCCCAAAAG AACCAAAAGG AGTCCTTAAA
AGGCCAAAAG AAAAGAACAT TGTGACAGAG TGTTCCAGAG TTTGTTGAAC TGTGAAGAGA AGAGAAGAGG GTAACTGCAA
CCAAGCAAGC GAAGCAGTGA TGGAGGATAG GATGAAGAAG ACGGTGCTTT CTCCACCCAT TGTGCTTCTC TTTCTAGCTT
TCTCACTTCT TCTCTTGCTT CCAGAAGCTT CGGCTACAAA GTTTAACGTT GGAGATAGCA AGTTTTGGAA CCCCAATATC
AACTACACTG AATGGGCCAA AGGAAAACAT TTCTACCTTG GAGATTGGCT GTGTAAGTTC CCTTTCTCTC TTTATCTATT
CATGTGTTTT GTCTGGGACT GGACTTTTTG TTTCCGTGCT GGGTGTTGTG TTGGTGCAGT CTCTCTGTGA ACCGGATCTG
ATTTAGTACG AGGATTGGAT GAAATAGATA AAGCTGTTAT CTTTCTGTTG TTTTCATCGC TGAATTTACT GTCTTTTGAA
GCAAGAGGGT CCATATTTGA TAGTTTCAAT TTCAGATCTT TTGGTTTTCT TCCCTGTCTT TAGTTAACAT TTGGGTCTTT
TGTTGAACTC ATGCTAGGTG GATAAGAACA GTGAAAGAAT TTGGATGGTG TTGTAGAAGA ACTGGGAATT GTTGTGTGTA
TGATATTACC AGCATTTTGT AAATGAACTG TAAAAGTTGT GTTTTTAGGG GAATGGTGTT GGAGTTTTTC CCACATTCCC
TGCCTCATTT CATTTTGATT TCTTAATTGA TATTTTCTGT CTAGAGGGAG TGTAAATGAA AAATAGGGTT TTGAATTTGG
ATCCCTTTTT GTGCTTTTGT TGACTTGGGC TGCATTTCCA AATCCTTAGT TAACATCCTT ATTCTGTTGC TTGTTCGTGC
ATTTCTCTCT TTCAGTGAAA ATTCCTCGTT TTTGTGCCGT CAAAATTTTC ATGGTTACTT TTGGTGTGAA TGCAAGTTAA
TTTGTGTTTT TCATGGTTCT TGCATCTTCT CTCCCCGTTG GTGTTGAGTT CTGGATGCTC ACCACCAAGA TAAGCCATAA
ATATGTGAAT GGTTAAACAA AAATGTGGAA TAGCAATCAA ACAATTGAAA TGTGAACAAG AATAGAGAAT TGCAGATCTT
GTTTAACCTT TAAACAATTT TTAGCTGTGG CAGGATGCAC TCTATACTGC CATATTCTGC GTATTATAGC ATGTTGCTCG
AGTTTATGAG TTCACTAATT TACCCAAATT AATCAAAAGG TTAAGCTGAA TATTCCCATC AATTAACATC ACAGTAAAAA
TGAGGTGAAG TAAAGTTAAA AGAATGACTT TCACCCTCAA TTAGTGGCTC AATTTGTTAA TGGAATGCAA CATAACATAA
CAGATATAGT ACATGTTTGA AATGTAAAAC TTACTTTTGA AGGACATTCT GTATCTTTTA GTCTCAAAAG TACTTTTAGA
ATGAGGCTAA GGGTAATCCA AACAAGGTAA TAGGTATTCA TTATTATTGA AGATCCTAAG TAAAGATAAG AAGACAAGTT
TATAGTATAT AAGTGGGTAT AAATCTCATT TTTCAAGTTG GTTTTGTTGG ATTGAGTTAT AGTTAAAGTT CACTTCTTAA
TAATTATCTC TTCTATCTTA GAAGTTTTCT ACTCTAGTTT TGATTTGTAC TCTCATTGTC TTGTCATACC TCAATTTTTG
GTTATAGAAG CACACAAACA CTTGTAAGAA GTAGCAATGA ACAAAGTTGT GTGGTGGTTG GGTGCAAATT TTGAGTTCCA
AACCAAGATT TTATGGAATG CAATGTTTCC TAGTTCATAT ATTCATGCTA ACTATGTCTG TTTTGCAGAT TTTGTTTACG
ACAGGAACCA AGCTAGCGTG CTGGAAGTGA ACAAGACCGA TTATGAGACT TGTAACTCTG ATCATCCACT CACAAACTGG
ACAAGGGGTG CAGGAAGAGA TGTGGTTCCT CTAAATGTAA CCAAAACCTA CTACATCATC AGTGGCAAAG GGTTCTGCTT
CAGTGGCATG AAGGTGGCTG TTCATGTCGA AAAGCTACCA CCTCCACCGA AAGCCGCCCC TGTAAAATCC GGCGCACCAA
CACTCTTCTC CACCGGCCAC ATTCTTCTCA TGCCGGTTGT TTTTGCCGTC GGAGCAGCGT GGGATGCATT CATTCATTTC
TGGTAGTGAA TACCACACCA CCATTGAACA ACATCATTGG ATAAGTGTTA ATGTTGTGTT AGTTGATTTT ATTTTTTGTT
GAAAGGCAAT TGTTGTCTGC ATTGCATGGT GATAGTAGTT GTTGGCCTCA AATGGGTCAG ACAAAAGGGT GATTTTTCAG
CAAGTTAGGT AGTGTCTGTT TGATTTTCAA AATGTGTTGT GTTTCTGCAT GATTATGGTC AGAAATATGC CACAAACTGG
TTTAAATTAA TTTGATTTAT TGGAGAATTC AAATGCGGGA ATTGCGGGAA TTTGTATCAT GCTTTAGGAC TGGTAGGACC
TTCTGCATGT GCTTGTAGCA TCATCATCAC TGCATTTTAC TTTTCATCAA TGTTTTCATG TCTTAAACTT AAATCCCATA
TTAATACGTA TTTAGAAGAC CCTTTTTCAT ATAATTAAGA AATTTTAATT TATCTTTGAA ACTTA

>Vigan.11G051900.01
TTAAATAAGA AAAAAAAGAC AACTTTCACA CAACAGATGC TATTTAAAAA ACCCCAAAAG AACCAAAAGG AGTCCTTAAA
AGGCCAAAAG AAAAGAACAT TGTGACAGAG TGTTCCAGAG TTTGTTGAAC TGTGAAGAGA AGAGAAGAGG GTAACTGCAA
CCAAGCAAGC GAAGCAGTGA TGGAGGATAG GATGAAGAAG ACGGTGCTTT CTCCACCCAT TGTGCTTCTC TTTCTAGCTT
TCTCACTTCT TCTCTTGCTT CCAGAAGCTT CGGCTACAAA GTTTAACGTT GGAGATAGCA AGTTTTGGAA CCCCAATATC
AACTACACTG AATGGGCCAA AGGAAAACAT TTCTACCTTG GAGATTGGCT GTATTTTGTT TACGACAGGA ACCAAGCTAG
CGTGCTGGAA GTGAACAAGA CCGATTATGA GACTTGTAAC TCTGATCATC CACTCACAAA CTGGACAAGG GGTGCAGGAA
GAGATGTGGT TCCTCTAAAT GTAACCAAAA CCTACTACAT CATCAGTGGC AAAGGGTTCT GCTTCAGTGG CATGAAGGTG
GCTGTTCATG TCGAAAAGCT ACCACCTCCA CCGAAAGCCG CCCCTGTAAA ATCCGGCGCA CCAACACTCT TCTCCACCGG
CCACATTCTT CTCATGCCGG TTGTTTTTGC CGTCGGAGCA GCGTGGGATG CATTCATTCA TTTCTGGTAG TGAATACCAC
ACCACCATTG AACAACATCA TTGGATAAGT GTTAATGTTG TGTTAGTTGA TTTTATTTTT TGTTGAAAGG CAATTGTTGT
CTGCATTGCA TGGTGATAGT AGTTGTTGGC CTCAAATGGG TCAGACAAAA GGGTGATTTT TCAGCAAGTT AGGTAGTGTC
TGTTTGATTT TCAAAATGTG TTGTGTTTCT GCATGATTAT GGTCAGAAAT ATGCCACAAA CTGGTTTAAA TTAATTTGAT
TTATTGGAGA ATTCAAATGC GGGAATTGCG GGAATTTGTA TCATGCTTTA GGACTGGTAG GACCTTCTGC ATGTGCTTGT
AGCATCATCA TCACTGCATT TTACTTTTCA TCAATGTTTT CATGTCTTAA ACTTAAATCC CATATTAATA CGTATTTAGA
AGACCCTTTT TCATATAATT AAGAAATTTT AATTTATCTT TGAAACTTA

>Vigan.11G051900.01
ATGGAGGATA GGATGAAGAA GACGGTGCTT TCTCCACCCA TTGTGCTTCT CTTTCTAGCT TTCTCACTTC TTCTCTTGCT
TCCAGAAGCT TCGGCTACAA AGTTTAACGT TGGAGATAGC AAGTTTTGGA ACCCCAATAT CAACTACACT GAATGGGCCA
AAGGAAAACA TTTCTACCTT GGAGATTGGC TGTATTTTGT TTACGACAGG AACCAAGCTA GCGTGCTGGA AGTGAACAAG
ACCGATTATG AGACTTGTAA CTCTGATCAT CCACTCACAA ACTGGACAAG GGGTGCAGGA AGAGATGTGG TTCCTCTAAA
TGTAACCAAA ACCTACTACA TCATCAGTGG CAAAGGGTTC TGCTTCAGTG GCATGAAGGT GGCTGTTCAT GTCGAAAAGC
TACCACCTCC ACCGAAAGCC GCCCCTGTAA AATCCGGCGC ACCAACACTC TTCTCCACCG GCCACATTCT TCTCATGCCG
GTTGTTTTTG CCGTCGGAGC AGCGTGGGAT GCATTCATTC ATTTCTGGTA G

>Vigan.11G051900.01
MEDRMKKTVL SPPIVLLFLA FSLLLLLPEA SATKFNVGDS KFWNPNINYT EWAKGKHFYL GDWLYFVYDR NQASVLEVNK
TDYETCNSDH PLTNWTRGAG RDVVPLNVTK TYYIISGKGF CFSGMKVAVH VEKLPPPPKA APVKSGAPTL FSTGHILLMP
VVFAVGAAWD AFIHFW*