GBrowse Details

Vigan.11G040800.01

Basic Information:
Name: Vigan.11G040800.01
Multiple alignment
Variant Information
Position: Chr11:4510698..4516512 (+ strand)
Length: 5815
Functional Information:
Description: Similar to 3-dehydroquinate synthase. [G7IDE5, Medicago truncatula]
GO: Biological Process: aromatic amino acid family biosynthetic process (GO:0009073)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: 3-dehydroquinate synthase activity (GO:0003856)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: 3-dehydroquinate synthase (IPR002812)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.46,3.05,2.44,6.10,2.10,3.04,0.39,2.72
Arabidopsis thaliana homolog: AT3G28760.2
Automatic updates:
Name: NM_001415097 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 3-dehydroquinate synthase homolog (LOC100806285), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:4510698..4510835 (+ strand)
Length: 138
Type: five_prime_UTR
Position: Chr11:4510836..4511217 (+ strand)
Length: 382
Type: CDS
Position: Chr11:4511935..4512101 (+ strand)
Length: 167
Type: CDS
Position: Chr11:4512371..4512469 (+ strand)
Length: 99
Type: CDS
Position: Chr11:4512575..4512643 (+ strand)
Length: 69
Type: CDS
Position: Chr11:4512714..4512854 (+ strand)
Length: 141
Type: CDS
Position: Chr11:4512943..4513032 (+ strand)
Length: 90
Type: CDS
Position: Chr11:4513726..4513893 (+ strand)
Length: 168
Type: CDS
Position: Chr11:4515628..4515703 (+ strand)
Length: 76
Type: CDS
Position: Chr11:4515780..4515907 (+ strand)
Length: 128
Type: CDS
Position: Chr11:4515908..4516512 (+ strand)
Length: 605
Type: three_prime_UTR

>Vigan.11G040800.01 class=Sequence position=Chr11:4510698..4516512 (+ strand)
GATCACTGGC CTTTTCCAGT GAGGCCGGTA TCACGTGACT TGGAACACCA GAAAGAGATG CCACGTGACT CAAGAAGATG
AGGTTGCACA CGGTCACTCC CTGGTTGCCG TTGCAGACTT CATCAACGAC AACATAGGAT GGCACTGCTG TCGCATATTT
GCATCTCTCA CTTCTCTTCA ATTGCACCTT CTTCATCTTT CTCCGTTTCA CCAACCACTT TCCTCCAATG TTCTTGGTTG
TCCACAGACT CTGGAAACAT TCGAGCCACA AACCTTTGTT CCAACTTTAA TTCTCTTCAT TGTGGAAAGA CCCTTTTGCG
GCATAGGCGT AATAGTCCTT GTTTCTCAAT GCCATCTTCT TCTTCTCCTT CTCGGACATC GTGGGATGAG ACTGGTAAAC
GATCCAAGAG AGTGTGGATA TGGACCACGA ACAAGCAGGT AATGACTGCG GCAGTAGAGA GAGGATGGAA TACTTTTGTT
TTCCCATCAC ACCATCGGCA ACTTGCTCAA GAATGGTCTT GTAAGTTCTT CATTCGGAAG GAAATTCTAT CACCCATTTG
TGTTTTTTCG GCATAATTTA ATTTGGATTG ACTGCAAATG CAAAAACATT TACAATCTCA ATCAATTGGG AATCAATCAC
TATGAATGAC TTTGAAAATG ATAATTATAG AAGCTAGCAA TCTTTCCGTA CATGAGACAA TTAATGGTTC AGGATGCAAA
CAGAACATAG AACACAAGCC TTATGCTATT AGATGCGGTT GGTTTCATGA ATCGCACTGG GCTATTCTGC TCCGTCAAAG
ATAAGATTTT CAGAGATATT GTTTTATATG AGGTCCCCCT AAACAACTTT ATCCAATGTG ATTCTTTCTT GGTCTTCCTC
TCTCCCTTTT CATAGCTGGT CTTAATGCTG GTAAAGGAGG AGAGTTGTGT TAAGCTCTCA GCTGTGAATA TAAAATGAAT
GTGGACCATG ATTGAAGAAT GCATTCTGGT GAGCTTCAAT TTGTTAATAC ATGATAGTGG GAAAATGTTT TGTGCTGAAA
GTATTATAAA AGGTCAAAAT GAAATCCCTT TAGTGTTATG CTAACCATAA ATAAGATAAG ATGACCATAA TTGTTTTGTA
CACAATACAT TTTCTGGCTC TGAGGAAAGT AGAGTTTGTA TTATTGGTGA ATCGGTATAT TATACTACTA CCATGTGTAA
TTTTACGAGT TTGGAATTTT GGTCTTGATG GGTACAGCAA TTGCAGTAAT ATGCCCACTT TTTGTTAATG AGGGAGAGGT
TTTGGATGAA CAGAATAAAA GGGTAGCCAC AATTTTTGAC GTTTCAAACC CAGAGGAGCT AGAGGGACTT AGACCAGAGG
ATGAACAGGC AGAGAGCATT GTAGTTAATT TACTAGATTG GCAGGTATTT TCGTTGTAGC TTGCTATAAC TAGTATAATG
GAATAGTTTT GCACACTTGT TATCCATGAA TGATTTTGTC TATGGTTTTT ATAACAACTT TAACTCTATG ACTTCCACAG
CATCACCTCA AAAACCATTT TTTTTCCTGG TTTGATCATG TCTGACGTCT ATTGCTGAAA CAAAATCCAC TGTCTTTTAA
AAGTGTAATA TAGTTTATTT TCAATCATTT ACATTCTCAT TTTCAATACT TTTCTTTGTT TACATTTTCT CAGGTAATAC
CTGCTGAAAA TATAATAGCT GCATTTCAAA GAAGCCAAAA GACCGTGTTT GCCATATCTA ATAATACATC TGAAGCTCAG
GTGTTTCTTG AGGTATACAC AAGAAGACAA ATGAAGTAAA CTTTACGCCG TATATAGTAG TACTTTTTTT CTTAGGCGTA
ATTCTCTTCT GACAGTTACA TCACTTGGAT TTTACAGGCG CTTGAACATG GTTTAGATGG CATAGTTATG AAAATTGAAG
ATGTTGAAGC TGTTCTTGAG CTAAAGGTAT TCTGTACGTA GATTAGACTT CTTCAGTAAT TAGGCTTGAC CTCTTATTAC
AGCTGGAAAC TTTCAGGCAT ATTTTGACAG AAGAATTGAA GAAAGCAATC TATTGAGCTT GACTGAAGCC ACTGTGACAC
ATATTCAAGT GGCTGGAATG GGGGATCGTG TTTGTGTAGA TCTCTGCAGT CTCATGAGAC CTGGTGAAGG ACTTCTGGTA
TGTATCAGTT TCCTCTGCAA CATTTAAGTT ATTTCTTGGC TAATCAGTGA AGCTTCCATT CTTATTGTTC AAATATTTGC
AACAGGTTGG ATCTTTTGCG AGAGGATTAT TTCTTGTTCA CTCAGAATGC TTGGAGTCAA ATTACATTGC AAGTAGGCCT
TTCCGGGTGA ATGCAGTAAG TTGTGCACAC AAGTTTGAAC TTAATATATT CATTGCCTTT GATCTTATTT GATAAAATCA
CCTCTCTTTT CATCATAATT CAATGGGTTG ACTGTGAGAC TAGCAATCAA ATCCCTTTTG GGAAAAAGGT TCAGTTATGG
TGTTATGTGA GTAACACTCA ACTTTCATGT GGATTTTCTA TGTTTGTATA TAAAAGTTAA TCATTAGCTT CATGTAATTT
TAAAGATCTG ACAGCATCTA TAATGACTAA AATATATTTA TTGCTATTGT GTGTAAGAAT TTATTTTAAT AGGGAAACCT
ATATTATTGC TGAATTAGGA TTGTTTTACT TTCAAAGCAG ACTTTGACCA AGCTTTTATT AAGGCAGTAC ATTCCTCATG
ATAATTGTTT CCCATTATTT GTCATGAATG TTGAATTAAA TTTACATGGG CTATAAGTAT TGTCTGCTCA TGTTGCAGAG
TCAGTAAACT AGGCACTTTA TAGCTGAAAT CTGTCTAACC TTGCATGTCT CCCTTTGCTA GGTTAATTCG GCTTATTTAC
ATTCCTGAAG CTGAAAATAT GACTTTTGCA GTATTTGTTT TTATTACTTT TTTTATTCAC AGTGTCTTGG AGTTTTCAGT
TAAAATGTTA GTCATGCTGT CTACATAAGC TCTATGAACC CTTTCTAACA AATTACTTAT CATAACAGGG ACCAGTGCAT
GCCTATGTTG CTGTTCCAGG AAACAGAACA TCCTACCTGT CAGAATTGAA GTCGGGAAAA GAAGTTATTG TTGTTGATCA
GCAGGGTCAC CAACGAATTG CTATTGTTGG GCGTGTAAAG ATAGAAAGTA GACCACTAAT CCTAGTGGAG GCAAAGGTTT
GTGAATGCAT TATTGAAAAA AAAAATATAT TGAAAAGTGT TTCTTTTATA TATTTTGCTT GATTTCTTTA ACGAGTGTGC
TATAGTGTAT TTTCTGTGGA ATATGTCAAG TTAATCTAAA ACAGTATATT CTTAAAGATG TAGCAGTTTA TAATACACTG
AGATTACAGC TTGTCCTTAG GGGTTTATGT AAACTCCTAT AAACTGGATA CTAAAGTGTA ATGGGTTAGT TTTTTTGAAC
AACATTTCTC ATGAATTCTG ATTCTTAGAC AAAATTGATT CTTAAACAAC AATTTCAAAG TTGGTCTTTT TCCTGATCCA
ACTTTAGTTT TTCTTTTGCT CTCTCTTCCA TTTCATTTTC CCCTTGTCCT CCTCAACTGG ATCTAAGAGT GTTACTGGAT
AAGATAAAAT TGCAAAACCA CTCATTTATC AGTCAGTAAA CAAGTTAGTG TTTTTGATAC AAAACCAGAT AGATATAGAG
TGGTTTAAAA CAAATTTTAA TGGAAGTTTG GGTTAAACCA AGTTTTATAG GGTTTAGGGT TTATAATAAC CTGAATTTAT
ATGGTTATCT TATTTTAAAT AGTTTTAAAT TAGCTTTGAG AGTTCTCAAA TTTCCCCTTA TTTAGCACTT GCAATGAAAC
CAATTGTCAT AAAGTATTAT TTCATAATCT CATCATCATT AGGGAAACCA TAATTCATTT TTCTATTTTA CCCTTAATTA
TATTCAAAAC CACAACATCA TCACTCCGGC AACTAACCCT TTGTTAATCC CAACTGTACA TGACTAAGAA AAACACCATA
GAGATGTACC TGAAAAAACA AAACATTGTT TGGTAACTAA TCTTAATACC TCTACTGACA CAAAACGCAC GGGTAAGAAA
TTAAATAAAC TGAAAAGGAA AAGAAGGAAA TATGCTTAAT TTGTTGAATA ATGGGAGGAA AGTGGAAAGT AATTGCATGC
TCTACTTTAT ATCTACAATA ATACATATGA TTTATTCAAT ATGATTTATT CAATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT TTGTGACGCT ACTAACACTT ATTGTTGGAC TTCTAACATT TGTCACACTC TAAGATATGC
CATCAACAAA GAATACCAAA AAAATTTTAA TGACTGTACA TTAAGATTGA ATTTCAAATT TGAATGCTGC ATGTAATGCT
GATCACATTT TTCAAAACGT TTAATTTATA TAACCATAAC TTTATCATAT CTGATAGATC ATTGTATGCA ATTCAGGAGC
TGAAGATTGA ACTGCTGTTT TGAACCTGAA GCATAAATAA ATTGGTCGGA AATTTTATCA TGGTACAACA ACTAGTTTTC
TCCCCAAAAT TAGACTTCCT GGTTATTAAA CATAAAATTC AGAGTACAGC ATCAAAAGTT GTTTTACAGG GTTTCAGAAC
TTAGAAAATG ATAATTTATG CCAGAATAAA TGCAATACAC AGTAACTGGT TGAATAGAAT ATCTACTTCT TCTACTTGTT
TGTTGAAGGG GTATTAGCCT TGTCGATGTC TTCACTTTGC AGCAATATTG TATAGTAAAG GATGAACATA TTGTGTGGAA
GTAAAGAACT AAAGTTTTGT TTTGTCGTGT GAACATCTCA TAAGTTATCA CTATTACAGG TCCTTCTATT GCTGTTTGCT
TGAGACCTAT CCAAAATTCT GATCTGGCAA TAATAATTGT TTCATTTCAG ATAGAATCAG ATAATCAAAC TATCAGCATC
CTTTTACAAA ATGCAGAAAC AGTTGCATTG GTTTGTCCCC CACAAGGTGA TTCAATGATT TTTTTCATAT TTTCTGTTAT
TTTGCTGATT TTCTTAAAGT GTTGTGTATT TTGTCTATTC AGGAAATACA CTGTCAAAAA CAGCCATTCC AGTGACCTCA
CTCAAAGTTG GAGATGAAAT TCTTTTGAGA ATACAAGGAG GTGCTCGGCA TACAGGAATA GAAATTCAAG AATTTATAGT
TGAGAAATGA ACTAGTAATA ATGTATTCAA GTTGTAGTAC TCATTCAAAT TGTGAACCTT TGTTCTCCCT GCAGTTATGA
TGGTAGAGTA GATTATGATC TGGCCAGAGA CATGGAAACG AGCAGCTTAT ATTTTGCTCT ACACATGACA TTTGAGTTAT
GGAGTTAGGT TGGGCCAAAG GGTTAACATG ATTGCACAAA AGCAGTCACT CACAGAACTG CTGATGTAAT CACCAAGTGT
TTGTTAACTT CACCATCATG ATTGAGCTCT AAATGCATCT TGGATGGAAC TAGCTCTCCA TTTCCTTCTT TCAAATGTTT
TTAGGGGCCT ATGAACTCAT AGTTTGCATT GGGTTCATCT AAATCAAAGA TGTTGCAGAC ATTTTCTTCA AAATTTTAAA
ATTGAGGTGT CATCTCTGAT TTTGGCATTA TTGGACACTT AATATAGTCC CCCCAATTGA ACACTTTTGC GTCAGCACCT
ACATCTTGAG GCAGGTAACT CAGGTTTTGT TATGCTGCCT GCATAAGTTT CTCACTTGTT CTCTTTTCTT ATAGCATGTA
TATAAATTTG TAATAGAAGT AATTTATGGG TTGAAGTCCC AACTTTTCGT CTAAA

>Vigan.11G040800.01
GATCACTGGC CTTTTCCAGT GAGGCCGGTA TCACGTGACT TGGAACACCA GAAAGAGATG CCACGTGACT CAAGAAGATG
AGGTTGCACA CGGTCACTCC CTGGTTGCCG TTGCAGACTT CATCAACGAC AACATAGGAT GGCACTGCTG TCGCATATTT
GCATCTCTCA CTTCTCTTCA ATTGCACCTT CTTCATCTTT CTCCGTTTCA CCAACCACTT TCCTCCAATG TTCTTGGTTG
TCCACAGACT CTGGAAACAT TCGAGCCACA AACCTTTGTT CCAACTTTAA TTCTCTTCAT TGTGGAAAGA CCCTTTTGCG
GCATAGGCGT AATAGTCCTT GTTTCTCAAT GCCATCTTCT TCTTCTCCTT CTCGGACATC GTGGGATGAG ACTGGTAAAC
GATCCAAGAG AGTGTGGATA TGGACCACGA ACAAGCAGGT AATGACTGCG GCAGTAGAGA GAGGATGGAA TACTTTTGTT
TTCCCATCAC ACCATCGGCA ACTTGCTCAA GAATGGTCTT CAATTGCAGT AATATGCCCA CTTTTTGTTA ATGAGGGAGA
GGTTTTGGAT GAACAGAATA AAAGGGTAGC CACAATTTTT GACGTTTCAA ACCCAGAGGA GCTAGAGGGA CTTAGACCAG
AGGATGAACA GGCAGAGAGC ATTGTAGTTA ATTTACTAGA TTGGCAGGTA ATACCTGCTG AAAATATAAT AGCTGCATTT
CAAAGAAGCC AAAAGACCGT GTTTGCCATA TCTAATAATA CATCTGAAGC TCAGGTGTTT CTTGAGGCGC TTGAACATGG
TTTAGATGGC ATAGTTATGA AAATTGAAGA TGTTGAAGCT GTTCTTGAGC TAAAGGCATA TTTTGACAGA AGAATTGAAG
AAAGCAATCT ATTGAGCTTG ACTGAAGCCA CTGTGACACA TATTCAAGTG GCTGGAATGG GGGATCGTGT TTGTGTAGAT
CTCTGCAGTC TCATGAGACC TGGTGAAGGA CTTCTGGTTG GATCTTTTGC GAGAGGATTA TTTCTTGTTC ACTCAGAATG
CTTGGAGTCA AATTACATTG CAAGTAGGCC TTTCCGGGTG AATGCAGGAC CAGTGCATGC CTATGTTGCT GTTCCAGGAA
ACAGAACATC CTACCTGTCA GAATTGAAGT CGGGAAAAGA AGTTATTGTT GTTGATCAGC AGGGTCACCA ACGAATTGCT
ATTGTTGGGC GTGTAAAGAT AGAAAGTAGA CCACTAATCC TAGTGGAGGC AAAGATAGAA TCAGATAATC AAACTATCAG
CATCCTTTTA CAAAATGCAG AAACAGTTGC ATTGGTTTGT CCCCCACAAG GAAATACACT GTCAAAAACA GCCATTCCAG
TGACCTCACT CAAAGTTGGA GATGAAATTC TTTTGAGAAT ACAAGGAGGT GCTCGGCATA CAGGAATAGA AATTCAAGAA
TTTATAGTTG AGAAATGAAC TAGTAATAAT GTATTCAAGT TGTAGTACTC ATTCAAATTG TGAACCTTTG TTCTCCCTGC
AGTTATGATG GTAGAGTAGA TTATGATCTG GCCAGAGACA TGGAAACGAG CAGCTTATAT TTTGCTCTAC ACATGACATT
TGAGTTATGG AGTTAGGTTG GGCCAAAGGG TTAACATGAT TGCACAAAAG CAGTCACTCA CAGAACTGCT GATGTAATCA
CCAAGTGTTT GTTAACTTCA CCATCATGAT TGAGCTCTAA ATGCATCTTG GATGGAACTA GCTCTCCATT TCCTTCTTTC
AAATGTTTTT AGGGGCCTAT GAACTCATAG TTTGCATTGG GTTCATCTAA ATCAAAGATG TTGCAGACAT TTTCTTCAAA
ATTTTAAAAT TGAGGTGTCA TCTCTGATTT TGGCATTATT GGACACTTAA TATAGTCCCC CCAATTGAAC ACTTTTGCGT
CAGCACCTAC ATCTTGAGGC AGGTAACTCA GGTTTTGTTA TGCTGCCTGC ATAAGTTTCT CACTTGTTCT CTTTTCTTAT
AGCATGTATA TAAATTTGTA ATAGAAGTAA TTTATGGGTT GAAGTCCCAA CTTTTCGTCT AAA

>Vigan.11G040800.01
ATGGCACTGC TGTCGCATAT TTGCATCTCT CACTTCTCTT CAATTGCACC TTCTTCATCT TTCTCCGTTT CACCAACCAC
TTTCCTCCAA TGTTCTTGGT TGTCCACAGA CTCTGGAAAC ATTCGAGCCA CAAACCTTTG TTCCAACTTT AATTCTCTTC
ATTGTGGAAA GACCCTTTTG CGGCATAGGC GTAATAGTCC TTGTTTCTCA ATGCCATCTT CTTCTTCTCC TTCTCGGACA
TCGTGGGATG AGACTGGTAA ACGATCCAAG AGAGTGTGGA TATGGACCAC GAACAAGCAG GTAATGACTG CGGCAGTAGA
GAGAGGATGG AATACTTTTG TTTTCCCATC ACACCATCGG CAACTTGCTC AAGAATGGTC TTCAATTGCA GTAATATGCC
CACTTTTTGT TAATGAGGGA GAGGTTTTGG ATGAACAGAA TAAAAGGGTA GCCACAATTT TTGACGTTTC AAACCCAGAG
GAGCTAGAGG GACTTAGACC AGAGGATGAA CAGGCAGAGA GCATTGTAGT TAATTTACTA GATTGGCAGG TAATACCTGC
TGAAAATATA ATAGCTGCAT TTCAAAGAAG CCAAAAGACC GTGTTTGCCA TATCTAATAA TACATCTGAA GCTCAGGTGT
TTCTTGAGGC GCTTGAACAT GGTTTAGATG GCATAGTTAT GAAAATTGAA GATGTTGAAG CTGTTCTTGA GCTAAAGGCA
TATTTTGACA GAAGAATTGA AGAAAGCAAT CTATTGAGCT TGACTGAAGC CACTGTGACA CATATTCAAG TGGCTGGAAT
GGGGGATCGT GTTTGTGTAG ATCTCTGCAG TCTCATGAGA CCTGGTGAAG GACTTCTGGT TGGATCTTTT GCGAGAGGAT
TATTTCTTGT TCACTCAGAA TGCTTGGAGT CAAATTACAT TGCAAGTAGG CCTTTCCGGG TGAATGCAGG ACCAGTGCAT
GCCTATGTTG CTGTTCCAGG AAACAGAACA TCCTACCTGT CAGAATTGAA GTCGGGAAAA GAAGTTATTG TTGTTGATCA
GCAGGGTCAC CAACGAATTG CTATTGTTGG GCGTGTAAAG ATAGAAAGTA GACCACTAAT CCTAGTGGAG GCAAAGATAG
AATCAGATAA TCAAACTATC AGCATCCTTT TACAAAATGC AGAAACAGTT GCATTGGTTT GTCCCCCACA AGGAAATACA
CTGTCAAAAA CAGCCATTCC AGTGACCTCA CTCAAAGTTG GAGATGAAAT TCTTTTGAGA ATACAAGGAG GTGCTCGGCA
TACAGGAATA GAAATTCAAG AATTTATAGT TGAGAAATGA 

>Vigan.11G040800.01
MALLSHICIS HFSSIAPSSS FSVSPTTFLQ CSWLSTDSGN IRATNLCSNF NSLHCGKTLL RHRRNSPCFS MPSSSSPSRT
SWDETGKRSK RVWIWTTNKQ VMTAAVERGW NTFVFPSHHR QLAQEWSSIA VICPLFVNEG EVLDEQNKRV ATIFDVSNPE
ELEGLRPEDE QAESIVVNLL DWQVIPAENI IAAFQRSQKT VFAISNNTSE AQVFLEALEH GLDGIVMKIE DVEAVLELKA
YFDRRIEESN LLSLTEATVT HIQVAGMGDR VCVDLCSLMR PGEGLLVGSF ARGLFLVHSE CLESNYIASR PFRVNAGPVH
AYVAVPGNRT SYLSELKSGK EVIVVDQQGH QRIAIVGRVK IESRPLILVE AKIESDNQTI SILLQNAETV ALVCPPQGNT
LSKTAIPVTS LKVGDEILLR IQGGARHTGI EIQEFIVEK*