GBrowse Details

Vigan.11G023600.01

Basic Information:
Name: Vigan.11G023600.01
Multiple alignment
Variant Information
Position: Chr11:2391391..2392735 (+ strand)
Length: 1345
Functional Information:
Description: Similar to Transcription factor C2H2. [B3IX35, Lotus japonicus]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, AN1-type (IPR000058)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.23,5.05,19.35,3.49,17.79,8.37,5.77,4.02
Structure :
Position: Chr11:2391391..2391449 (+ strand)
Length: 59
Type: five_prime_UTR
Position: Chr11:2391450..2391557 (+ strand)
Length: 108
Type: CDS
Position: Chr11:2392005..2392475 (+ strand)
Length: 471
Type: CDS
Position: Chr11:2392476..2392735 (+ strand)
Length: 260
Type: three_prime_UTR

>Vigan.11G023600.01 class=Sequence position=Chr11:2391391..2392735 (+ strand)
AATCTCTTCA ATTCAATTTT ATCGGTTTTT CCTTTTTCCA CAAACTCAAA ACCCTAACAA TGGCATCAGG CGGAACCGAG
GCCTTTCCAG ATTTGGGTAA ACACTGCCAA CACAGCGATT GCCACCAACT CGATTTTCTT CCTTTCACAT GCCAAGGTTG
CCAAAAGGTA ATTCAACTTT CTCTTCTTCT ACCATCAAAG GTTAATTGCA ATACTTTATT CAATATGTTT AATTTCATCA
TACAAATTCC AATTTTGCTT ATGTGATTTT CAGAAATTAA TAGTTCTATG TTCTAAATAT GGGTTTTCAG TTCTCAAAGT
GTTTTTGATC ATGCTGGTTA TTCTTGCACT TATCTTATTT TTCCAAAATA GTAAATTTTT TATTATTAGA CCAAAACATA
GTCAATAATC AAAATAGAGG TATAATACAA ACAATTCATA AAACAATATA TTCATAACTG TTTGTCTCTA TCTCTTTCCA
TAACAATCAC ATGTAATAAA TTGTGTTAAG AAAATGGATC AAACAAGAAA AATTGTTGTA CATGAAATTT CTCTTAATCT
GAAATGTTTG TAAAGCCTCA GGCCAACAAC ACTAACATGG CTGCAATTTA ACAGGTGTTT TGTTTGGAGC ACAGATCCTT
CAAGTCTCAC GCGTGCAAGA ATTCCGACCA CAACAGCAGA AAAGTGGTTG TCTGCGAAAC GTGTTCCATG TCCATTGAGA
CCACCGGCTA TGTGGGACAG GAAGAGGAGG CAATCTTGGA GAAGCACCTA AAGTCTGGGA ACTGTGATCC CACCAAGAAG
AAGAAACCCG TTTGCCCTGT CAAGCGCTGC AAGGAGGTTT TGACTTTCTC CAACACCAGT ACCTGTAAAA CTTGCCACAT
TAAGGTGTGC CTCAAGCACC GTTTCCCTGC TGATCATGCT TGCAGCCGAG GAGTTTCAGC TTCTTCCTCA TCCTCTGTTG
CTGATAGTGG ATGGAAGAAT CGGTTTTTGG CTGCTTTAGG TTTAAGGGCT GGACAGAACT GTGCCAAAAC TGGTTCATCT
CGTTCTACCT CTCCTCCTAG CACTCCTTCT GTCAAGGCCT ATTGAATGCT ATTTGCTTTG AATGATTTCA GAGTGGTTTG
ATGGAATGTT GTAGTATGTT CCATTCTGTT GCAATTTGAA TGTTCAAATT TACAGCATAA ACTACGATAT TTATTTAGAT
GTCGTGTGGT AGCACACATC ATTGTTCCCA TTTGATTTAG GTTCATAAAT ACCTTTTCAA TGTACATCCT TGCTTATAAA
ACCAAATACT GAAAGGTTCA ATTGCCATTC ATACAATTCA CGATGGTTCT CAATCTTCTT TAATA

>Vigan.11G023600.01
AATCTCTTCA ATTCAATTTT ATCGGTTTTT CCTTTTTCCA CAAACTCAAA ACCCTAACAA TGGCATCAGG CGGAACCGAG
GCCTTTCCAG ATTTGGGTAA ACACTGCCAA CACAGCGATT GCCACCAACT CGATTTTCTT CCTTTCACAT GCCAAGGTTG
CCAAAAGGTG TTTTGTTTGG AGCACAGATC CTTCAAGTCT CACGCGTGCA AGAATTCCGA CCACAACAGC AGAAAAGTGG
TTGTCTGCGA AACGTGTTCC ATGTCCATTG AGACCACCGG CTATGTGGGA CAGGAAGAGG AGGCAATCTT GGAGAAGCAC
CTAAAGTCTG GGAACTGTGA TCCCACCAAG AAGAAGAAAC CCGTTTGCCC TGTCAAGCGC TGCAAGGAGG TTTTGACTTT
CTCCAACACC AGTACCTGTA AAACTTGCCA CATTAAGGTG TGCCTCAAGC ACCGTTTCCC TGCTGATCAT GCTTGCAGCC
GAGGAGTTTC AGCTTCTTCC TCATCCTCTG TTGCTGATAG TGGATGGAAG AATCGGTTTT TGGCTGCTTT AGGTTTAAGG
GCTGGACAGA ACTGTGCCAA AACTGGTTCA TCTCGTTCTA CCTCTCCTCC TAGCACTCCT TCTGTCAAGG CCTATTGAAT
GCTATTTGCT TTGAATGATT TCAGAGTGGT TTGATGGAAT GTTGTAGTAT GTTCCATTCT GTTGCAATTT GAATGTTCAA
ATTTACAGCA TAAACTACGA TATTTATTTA GATGTCGTGT GGTAGCACAC ATCATTGTTC CCATTTGATT TAGGTTCATA
AATACCTTTT CAATGTACAT CCTTGCTTAT AAAACCAAAT ACTGAAAGGT TCAATTGCCA TTCATACAAT TCACGATGGT
TCTCAATCTT CTTTAATA

>Vigan.11G023600.01
ATGGCATCAG GCGGAACCGA GGCCTTTCCA GATTTGGGTA AACACTGCCA ACACAGCGAT TGCCACCAAC TCGATTTTCT
TCCTTTCACA TGCCAAGGTT GCCAAAAGGT GTTTTGTTTG GAGCACAGAT CCTTCAAGTC TCACGCGTGC AAGAATTCCG
ACCACAACAG CAGAAAAGTG GTTGTCTGCG AAACGTGTTC CATGTCCATT GAGACCACCG GCTATGTGGG ACAGGAAGAG
GAGGCAATCT TGGAGAAGCA CCTAAAGTCT GGGAACTGTG ATCCCACCAA GAAGAAGAAA CCCGTTTGCC CTGTCAAGCG
CTGCAAGGAG GTTTTGACTT TCTCCAACAC CAGTACCTGT AAAACTTGCC ACATTAAGGT GTGCCTCAAG CACCGTTTCC
CTGCTGATCA TGCTTGCAGC CGAGGAGTTT CAGCTTCTTC CTCATCCTCT GTTGCTGATA GTGGATGGAA GAATCGGTTT
TTGGCTGCTT TAGGTTTAAG GGCTGGACAG AACTGTGCCA AAACTGGTTC ATCTCGTTCT ACCTCTCCTC CTAGCACTCC
TTCTGTCAAG GCCTATTGA

>Vigan.11G023600.01
MASGGTEAFP DLGKHCQHSD CHQLDFLPFT CQGCQKVFCL EHRSFKSHAC KNSDHNSRKV VVCETCSMSI ETTGYVGQEE
EAILEKHLKS GNCDPTKKKK PVCPVKRCKE VLTFSNTSTC KTCHIKVCLK HRFPADHACS RGVSASSSSS VADSGWKNRF
LAALGLRAGQ NCAKTGSSRS TSPPSTPSVK AY*