GBrowse Details

Vigan.11G020300.01

Basic Information:
Name: Vigan.11G020300.01
Multiple alignment
Variant Information
Position: Chr11:2019065..2022407 (+ strand)
Length: 3343
Functional Information:
Description: Similar to Uncharacterized protein. [I1M021, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Helix-turn-helix motif (IPR000047)
Homeobox domain (IPR001356)
Leucine zipper, homeobox-associated (IPR003106)
Homeodomain-like (IPR009057)
Homeobox, conserved site (IPR017970)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:84.47,42.89,65.50,53.02,29.78,10.10, 64.88,91.46
Arabidopsis thaliana homolog: AT3G01470.1
Automatic updates:
Name: NM_001253281 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max homeobox-leucine zipper protein HAT5-like (LOC100813420), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr11:2019065..2019570 (+ strand)
Length: 506
Type: five_prime_UTR
Position: Chr11:2019571..2019661 (+ strand)
Length: 91
Type: CDS
Position: Chr11:2020259..2020389 (+ strand)
Length: 131
Type: CDS
Position: Chr11:2020728..2020967 (+ strand)
Length: 240
Type: CDS
Position: Chr11:2021724..2022116 (+ strand)
Length: 393
Type: CDS
Position: Chr11:2022117..2022407 (+ strand)
Length: 291
Type: three_prime_UTR

>Vigan.11G020300.01 class=Sequence position=Chr11:2019065..2022407 (+ strand)
GAAGAAAGTA CTATAAAGGG CGGTGGCCAT GGGTCGGACA ACTTTAGTCG CAGAAGACAC TCACAAAGAC ACAGTGCGTT
GACGATACAC ACAAACGCAA AAGAGGTTCG CCGGAAAATA TTTCTCCGGG ACTCCGTCGA CGGTGTTTGA GGTTTTTCTC
GAACACGAAA CTGAGGCCAG AAAAGGACGA ACTTGGGTGG TGGGTAGGAT CTGGCGGTGT ATGATGGGAT CTTGCATATG
CCCGTTGGAG ACTCCGGCGA GGTTGCTTTG GACCACGAGC TTCTTCCGTC ATAAGCTTAT GATCTTCTAA TAATTCCCAC
ACAAAAGCAA AAATCTCAGC AAAAACAACA ACAACAGCAA CCCTTCTAAA TTTTCAAACA AGATTCTAGT AAAACAGAGT
AAACCGCAAA AAACAACCAC AAACACACAA AAAAACACTT TTTTAAGTAC TAATCTCTTT CTCTCGCTGG AAAGTGTCTC
CGGCGGTGGT GAGTGATCGA AGTGCCATGG AGTCTGGACG GCTTTTCTTT GATGCCTGTG CTTCTCGCGG GAACACCAAC
ATGCTCTTCC TCGGCAACAC TGAACTCGCT TTCCGAGGTC ATTTTCTTTC GCTCCTTGCT CTTGAATTCA TCTTCTTAGT
TTTATCTTGA TACCTTTTTT GTATTGAAAA TTTGGATTTG AATGGTATGT TGTGGAGTAG TTTTTGTTTG TGTTTTTTAT
GGTATTTGGT GTTCTTCCTT CAAAAGGGGA ATCTTGCCTC ATCAATTTAT GTTGACCTTT AATATGACTC ATTATTAAGC
AGATTGTCAA AACAATTGAA TTTCACCTCT AATTTATGTT GATCTTTAGT ATAAATCATC ATTGCCTAAA TTGTCTACAT
GAAACTCTAA TATTGATTGA AGAAAAGTAT TAAAAAAACA TGTAAAGAAA CCGCATCCAA GGTTTTGTGC TTCTAAAATT
GATGTGTTTG GTTGCTGGGG AGTTAGGAAC AGAGAGATGG TTCTGGTTAA GGAAAAATTA AAGCTTAAAA AAGGCATGAT
TCGATTTGGG GTTGTGATAA AGGAAGCAAC TTCCTTTAGA GTGACAAATA AGGAAATAAA ATTTCTATAT TTATTCCGTG
TGTGAATTAT TATGTTGAGA CATGAAAGAG AGTTAATTGA TGAAGTTTTG GTTTTGGGAT TGAAATGGAA GCAGGGAGAT
CGATGATGAG CTTGGAGGAA GCCTCAAAGA GGCGACCTTT TTTCACCTCA CCGGATGAAC TGTATGACGA GGAGTATTAT
GAGAAGCAGA TGCCGGAGAA GAAGCATCGC CTCAGTTCTG AACAGGTTGA AATTTGAATG AACTGCTATT TCTTGTTGTT
GTTGTTTTGA TCAGCAATTT GAATGAATTC CTTTGAGTTT GGCTTCTAAA TTTAATAGTG TATGGAAAAA AAGATGGTTG
GATTTAAAGA GAAATTCCAT TTTGTAGCTA TAAAGTGATT GATTTTGAAA CCATTTCTTA TTGTTAGTAG TAAATGAAGA
CAACTGTCAT GGAGTTGAAT GGTTGGTGGT GTTATTAATT TAGTAATGGA TCTGATGAGA GAGATAATGT ATAAGGCAAA
TTCCTGTGAC AGTTTGCCGT GAATATTATA ATGTTGTGAC AGTCTTGTGT GATTGATGGT TAGGTCCATC TGTTGGAGAA
GAGCTTTGAG GAAGAGAACA AACTGGAGCC TGAGAGGAAG ACCCAGTTGG CCAAGAAGCT GGGATTGCAA CCAAGGCAGG
TAGCTGTGTG GTTTCAGAAC CGCAGGGCTC GATGGAAGAC CAAACAGCTC GAAAGGGATT TTGATGTTCT CAAGTCTTCA
TACGATACCC TTCTTTCATC CTATGATTCA CTCATGAAGG AGAATGAGAA ACTGAAATCT GAGGTACATT TATGCATGGA
TAAAATATTG GAAAAGTAGT AAAATCATTG TATCTGGGCA ACAGGGGAGT TGAGATTTTT TAATTTAGAT TTGGTTGCTC
ATATATGCAA CTTGAGAAGA TGTGAATGTT AGGACACAAA TAAAAGTTCC ACATCGAATA AAAATAAGAA ATGAATATAG
GTTTATCAAA AGCAAATCCG TAAGGACTTG ATCGAGAATG GACAATATCT TATTACTTTG GAGAACTACG TGCGTTGTAC
ATCCCTACAA TGAATGGTGC AATGGTTACT TACAGCTATA GGTATGGTAG ATGTGTGATG AAATATTGGG TGAATAGAGT
AGAATAGAAT ATAAATTGTC TGTGAACACT ATAGGATAGA ATTAGTGGCT TCACAATCAG AACTCCATCA TAGCATAGCA
TAGGGAAAGA AGTCGACACT TGAAATAGAA GATGATTGGT AGCTATCAAG AAAGGGCCCT ACACATGAGA TTCGACACTA
TAATAATCAC AAACTACCAA GAGTAGCATC TGTTCTGAAC CCCACCTGGT TTGCAAAGAA GCCACTTTCA GAGTAACTAT
GCGAATATAC CTCTGTAGAT TTCTCAAAAT ATGCTTTAAG ACCCCCTTTT CTGAAAGGGA TCGATGAACT TTAAAAAAAA
AAGAGTATGC AAGCTAGGCC ATAAACTAAT TAACAAGTGG ACTTTTTTTT TAAAGTGTGG TGGATTGAAT ATCTTAATGA
CATGTTGACT ATTCCGCAGG TGGTATCCTT AAATGAGAAG CTTCAAGTTG AAGCTAAAGA GGTGCCTGAG GAACCATTGT
ATGACAAGAA AGTTGATCCA CTTCCGGTAG AAGATATAGC TTCAATTTTC AGCACAAGGG TGGAGGACCA CCAGAGCAGT
GGGTCTGTTG GAAGTGCAGT GGTGGATGAG GGTAGTCCAC AGCTGGTGGT TGACAGTGTT GATTCACACT TTCCGGCTGA
GAACCCTGGT GGATGTGTGG GCCCAGTTGA AAGAGTTCAG TCGGAGGAGG AGGATGGAAG TGATGATGGG AGGAGTTACA
TGGATGTGTT TGTGGTATCT GAAACTGAGA ACCAAAACCA TGAGGAAGGA GAGGGATTGG TTTGGTGGAC CAATATGTAT
TATGTTGGAT AAATGATAAT GCAGCAGCAG ACATGAAATT AGAGGCATAA TTAAGAGAAG GTAATGATAA TAATATTGAA
TAATTAGATG TATGGTGTGG GCAAGGAGAA AAATGTAAAC GCCCGGGTGG CTTGGACGAC CCCTAGGAGT TGGAGTGTCC
TTTTGCCAAG TTTAATAAAT AAAGTCTAGT AGTAGTAATT TCGTCAAATA ATGTCAAGTG TGGGTTAATG CTTGTACTTC
TTCCAAAACT ACAGTAAGAT TATTTAATGT TTAAGTATAA AAACATAGTT AATTAGTAAG TCC

>Vigan.11G020300.01
GAAGAAAGTA CTATAAAGGG CGGTGGCCAT GGGTCGGACA ACTTTAGTCG CAGAAGACAC TCACAAAGAC ACAGTGCGTT
GACGATACAC ACAAACGCAA AAGAGGTTCG CCGGAAAATA TTTCTCCGGG ACTCCGTCGA CGGTGTTTGA GGTTTTTCTC
GAACACGAAA CTGAGGCCAG AAAAGGACGA ACTTGGGTGG TGGGTAGGAT CTGGCGGTGT ATGATGGGAT CTTGCATATG
CCCGTTGGAG ACTCCGGCGA GGTTGCTTTG GACCACGAGC TTCTTCCGTC ATAAGCTTAT GATCTTCTAA TAATTCCCAC
ACAAAAGCAA AAATCTCAGC AAAAACAACA ACAACAGCAA CCCTTCTAAA TTTTCAAACA AGATTCTAGT AAAACAGAGT
AAACCGCAAA AAACAACCAC AAACACACAA AAAAACACTT TTTTAAGTAC TAATCTCTTT CTCTCGCTGG AAAGTGTCTC
CGGCGGTGGT GAGTGATCGA AGTGCCATGG AGTCTGGACG GCTTTTCTTT GATGCCTGTG CTTCTCGCGG GAACACCAAC
ATGCTCTTCC TCGGCAACAC TGAACTCGCT TTCCGAGGGA GATCGATGAT GAGCTTGGAG GAAGCCTCAA AGAGGCGACC
TTTTTTCACC TCACCGGATG AACTGTATGA CGAGGAGTAT TATGAGAAGC AGATGCCGGA GAAGAAGCAT CGCCTCAGTT
CTGAACAGGT CCATCTGTTG GAGAAGAGCT TTGAGGAAGA GAACAAACTG GAGCCTGAGA GGAAGACCCA GTTGGCCAAG
AAGCTGGGAT TGCAACCAAG GCAGGTAGCT GTGTGGTTTC AGAACCGCAG GGCTCGATGG AAGACCAAAC AGCTCGAAAG
GGATTTTGAT GTTCTCAAGT CTTCATACGA TACCCTTCTT TCATCCTATG ATTCACTCAT GAAGGAGAAT GAGAAACTGA
AATCTGAGGT GGTATCCTTA AATGAGAAGC TTCAAGTTGA AGCTAAAGAG GTGCCTGAGG AACCATTGTA TGACAAGAAA
GTTGATCCAC TTCCGGTAGA AGATATAGCT TCAATTTTCA GCACAAGGGT GGAGGACCAC CAGAGCAGTG GGTCTGTTGG
AAGTGCAGTG GTGGATGAGG GTAGTCCACA GCTGGTGGTT GACAGTGTTG ATTCACACTT TCCGGCTGAG AACCCTGGTG
GATGTGTGGG CCCAGTTGAA AGAGTTCAGT CGGAGGAGGA GGATGGAAGT GATGATGGGA GGAGTTACAT GGATGTGTTT
GTGGTATCTG AAACTGAGAA CCAAAACCAT GAGGAAGGAG AGGGATTGGT TTGGTGGACC AATATGTATT ATGTTGGATA
AATGATAATG CAGCAGCAGA CATGAAATTA GAGGCATAAT TAAGAGAAGG TAATGATAAT AATATTGAAT AATTAGATGT
ATGGTGTGGG CAAGGAGAAA AATGTAAACG CCCGGGTGGC TTGGACGACC CCTAGGAGTT GGAGTGTCCT TTTGCCAAGT
TTAATAAATA AAGTCTAGTA GTAGTAATTT CGTCAAATAA TGTCAAGTGT GGGTTAATGC TTGTACTTCT TCCAAAACTA
CAGTAAGATT ATTTAATGTT TAAGTATAAA AACATAGTTA ATTAGTAAGT CC

>Vigan.11G020300.01
ATGGAGTCTG GACGGCTTTT CTTTGATGCC TGTGCTTCTC GCGGGAACAC CAACATGCTC TTCCTCGGCA ACACTGAACT
CGCTTTCCGA GGGAGATCGA TGATGAGCTT GGAGGAAGCC TCAAAGAGGC GACCTTTTTT CACCTCACCG GATGAACTGT
ATGACGAGGA GTATTATGAG AAGCAGATGC CGGAGAAGAA GCATCGCCTC AGTTCTGAAC AGGTCCATCT GTTGGAGAAG
AGCTTTGAGG AAGAGAACAA ACTGGAGCCT GAGAGGAAGA CCCAGTTGGC CAAGAAGCTG GGATTGCAAC CAAGGCAGGT
AGCTGTGTGG TTTCAGAACC GCAGGGCTCG ATGGAAGACC AAACAGCTCG AAAGGGATTT TGATGTTCTC AAGTCTTCAT
ACGATACCCT TCTTTCATCC TATGATTCAC TCATGAAGGA GAATGAGAAA CTGAAATCTG AGGTGGTATC CTTAAATGAG
AAGCTTCAAG TTGAAGCTAA AGAGGTGCCT GAGGAACCAT TGTATGACAA GAAAGTTGAT CCACTTCCGG TAGAAGATAT
AGCTTCAATT TTCAGCACAA GGGTGGAGGA CCACCAGAGC AGTGGGTCTG TTGGAAGTGC AGTGGTGGAT GAGGGTAGTC
CACAGCTGGT GGTTGACAGT GTTGATTCAC ACTTTCCGGC TGAGAACCCT GGTGGATGTG TGGGCCCAGT TGAAAGAGTT
CAGTCGGAGG AGGAGGATGG AAGTGATGAT GGGAGGAGTT ACATGGATGT GTTTGTGGTA TCTGAAACTG AGAACCAAAA
CCATGAGGAA GGAGAGGGAT TGGTTTGGTG GACCAATATG TATTATGTTG GATAA

>Vigan.11G020300.01
MESGRLFFDA CASRGNTNML FLGNTELAFR GRSMMSLEEA SKRRPFFTSP DELYDEEYYE KQMPEKKHRL SSEQVHLLEK
SFEEENKLEP ERKTQLAKKL GLQPRQVAVW FQNRRARWKT KQLERDFDVL KSSYDTLLSS YDSLMKENEK LKSEVVSLNE
KLQVEAKEVP EEPLYDKKVD PLPVEDIASI FSTRVEDHQS SGSVGSAVVD EGSPQLVVDS VDSHFPAENP GGCVGPVERV
QSEEEDGSDD GRSYMDVFVV SETENQNHEE GEGLVWWTNM YYVG*