GBrowse Details

Vigan.11G020200.01

Basic Information:
Name: Vigan.11G020200.01
Multiple alignment
Variant Information
Position: Chr11:1988656..1991649 (- strand)
Length: 2994
Functional Information:
Description: Similar to Uncharacterized protein. [I1N5T4, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: SWEET sugar transporter (IPR004316)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.10,8.69,143.81,1.42,0.00,12.86,0.09,0.99
Automatic updates:
Name: NM_001370952 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sugar efflux transporter SWEET33 (SWEET33), mRNA.
PubMed ID: 26162601 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:1988656..1988906 (- strand)
Length: 251
Type: three_prime_UTR
Position: Chr11:1988907..1989062 (- strand)
Length: 156
Type: CDS
Position: Chr11:1989852..1989974 (- strand)
Length: 123
Type: CDS
Position: Chr11:1990072..1990233 (- strand)
Length: 162
Type: CDS
Position: Chr11:1990737..1990953 (- strand)
Length: 217
Type: CDS
Position: Chr11:1991162..1991198 (- strand)
Length: 37
Type: CDS
Position: Chr11:1991441..1991483 (- strand)
Length: 43
Type: CDS
Position: Chr11:1991484..1991649 (- strand)
Length: 166
Type: five_prime_UTR

>Vigan.11G020200.01 class=Sequence position=Chr11:1988656..1991649 (- strand)
TAAAAAGAAG CTTCTAGTAG GTAAGTATAT GTAGCTGTCT CTGGCTGGTA CCGGTTCCCA ACCTCATGCA TTCTCCTTTT
CTCTTTCTCT TTCTCACTCT CTCTTCCATT CTGTGATTTT CTGTTGCATT ATTAATTCTT TCTGCAGAAA AGAAAAAAAC
CTGAGAATGG TGAACCCTGC AATTGCTCGT AACGTCGTCG GCATAATAGG TTTTTCTTTC TCATTTCTCA ATCTTTCAAT
CTTAACATCA ATTTTTTGTG TTGCTTTCAC TGTAATCCTT TTAGTCAAAC AATTTGGAAT ATAATCATGT TATTAATTGG
AACTACTGCT CATAATTAAT TTTAACTAAT CTCTTCGTAA ATGTAGTTAA TAATGCTTGA AGAATAAATT ACGGAAAAAT
AATAATGACG AAAAGCAAAT TTTAATCGGT TTAGCGTAAT CTTCTGTGCA GGCAATGTCA TCTCCTTTGG CCTGTTCTTC
TCACCTGCGT ACGTAAACAC TTGTTCTTCT TCCTTGCTCT GTTTTGTTTT TTTCTTCTTC ATTTGTTACA TGTCGTTTTC
AGTAATTAGT CTAATTTAGG TTGCTTTTCG AAATAATTAA TTTATACGTT AACAGAGGAA TTGATAAAAT TTTGCATTAT
CATCTAATCA GAATTAGAGT TATTAGAAAT TTTGATTGGT TTTGAATGGA GTGCAGACCA ACTTTCTATG GAATAGTGAA
GAAGAAGAGC GTGGAAGAGT TCAAGCCTGA TCCTTACTTA GCAACGGTTC TGAATTGTGC TTTTTGGGTG TTCTATGGAA
TGCCTTTTGT GCATCCAAAC AGCATTTTAG TTCTCACCAT CAATAGTGTT GGGCTTGTGT TCGAATTTTT CTATCTTACC
ATATATTATA TCTACGCCAC CAACAAAGGA CGGGTGCATA TCTTTTCCCT CTCATTATAC TCATTCATTT CAACATTTTC
ATTATATAAC ATGGTCCCAC TTTAATACCC TTTTCTCTCC CTATAATGAC TAGAATCTCC TATATTTAGC TCTCTTTTTG
ACTCTTTTGT ACTCATCTTT AAACAAATGT ATCAATCATT TTATTGTGGT TTTCAAATAG TCCTCTCACG AGCAAATATT
GGGGTAACCA CTCATTGGAA CTTAAATATA TATTATGTAT GCAAAAGTTG GGTTAATTAA GTTGGATTAA AATCAATTTG
GTTTGTTAAT TGTTAGTGAG TGAATGATTT TTATCGGTTG TATATTGTAG AACTAACTCT AAAACACTCA TACCTGCCAA
ATCAATAGCA TATATTTAAT TTAAAGAGAT GCCCAAGATC AAAGAAACTT TTGTTCTTTT CTATATTTCA TTACCCTTAA
AATTGAATAT TTTCATTAAC ACTAACTGTC TCTAATTGTC TCTTCCCTAA CTTCAGAAGA AGGTACTGAT TTTCCTTCTC
ATCGAGCTTA TTTTCTTTGC TGCGGTTGCT CTTGTAACAA TGCTGGCACT GCATGGCACA AAGAAAAGGT CATTAGTGGT
TGGTATTCTG TCTGATATCT TCAATGTTAT GATGTATGTC TCTCCTCTTA CAGTTATGGT AAGTTTTCTA TATTTAATAA
GTTTTTAGCA CATAATACAT AATAGTTAAT GTATAACATT TTTCACACCA TAGTCTTTGT ATGCATGATG AACAGGCAAA
GGTTATAAAA ACTAAGAGTG TGAAATACAT GCCATTTTGG CTTTCTGTGG CTAACTTCCT TAATGGTCTG TGTTGGACAA
CATATGCTCT CATCCACCCC TTTGACCTTT ATGTGCTGGT AAATAGCAAC TTCACTTCTC ACCTTGTTGT CCTCTTATTA
TTTCTATTTC TGGTGAATCA TCACAAATGG GTAGGTTTGA GTGAGAATGA ATTCAGGGTC TTAAACAAGT AGTTAAAGGA
ATCAAAATTA TTATGACTTG GGTACGGACA AAAATTGGTT AGAAAATATT TAAACCATGA CATGTGAACA GAAAAAATCT
GACTACAGAA GCAATCTATT TAAAGTGTTT AGGATTTAAA TTAATTTAAT GACCAGGTGA TCTAAACAGA TTACGATAAA
AAAAAAAATT TGGATTGATT CGTATTGAAG ACAGAATAGT TCATTTAGTC AATAAAAATA AATTTGTCCA AAATTTATAT
TTTTCTCATA ACTATTTTTA GTATTAAAAT ATTATTTCTT TTGTTTTAAA TATTTGAAAA TGTACTCTTC CACTATTATT
AATTAATGCA AGAAACATTA TGAATCGAGA TTTATAAAAG AAATAAACAC CACTTTCAAT TAGAAGCTTA AAAATAAGAA
CAAATATTTT ACTTTTTTTT TACATTGTTA TAAACATTTT TACCCCCAAC CCATTTATTA TTGTTATTAT TATTATTTTC
ATTCTTCCCT GATACACTCC TTTCTTATTA CACAATAGTT GGTTTTATTA TTTCATAATT TTTTTAATAA ATTGTTAAGA
ATATTATCTA ACATGTCCAC TTTTATGACA TTCAAATGTA AACAATTATT GGGAATTATT ATGAATGTTG TTTTGATTTT
TACCCTTACC TTTGTATATT ATTTCAGATC AGCAACGGTA TTGGAGCAAT CTCCGGACTA GTTCAGCTCC TGTTATATGC
ATGTTACTGT TCCTGCAAGA GTGAAAAAGA TGACGATGGT GATCATGATT TGAAACCAGC TGGGGTTCAG CTCTCCAACA
TAAATGGAAC AGTGGCTGTG TGATTACACA TCAATATGGA GTCATAACTT TTTTTTCTCT TTTATTTTCT GTTTACTCCT
TCTTCACCTT ATACTTCTTT CTGCCTCTTG AGTTTCAAAT GCAACAAAGA GATTTATATG TGGACATATA GAATGGTTGC
TTTTATAATA CATATGCATG CTTAATGCTA AGATTTACTT TGGATTTTAT TTTCAAGTTT TGTATGTCAA TTGTGTAAAT
ACTTCATTAA ACAATCGAAA TCAATTAATT TGGC

>Vigan.11G020200.01
TAAAAAGAAG CTTCTAGTAG GTAAGTATAT GTAGCTGTCT CTGGCTGGTA CCGGTTCCCA ACCTCATGCA TTCTCCTTTT
CTCTTTCTCT TTCTCACTCT CTCTTCCATT CTGTGATTTT CTGTTGCATT ATTAATTCTT TCTGCAGAAA AGAAAAAAAC
CTGAGAATGG TGAACCCTGC AATTGCTCGT AACGTCGTCG GCATAATAGG CAATGTCATC TCCTTTGGCC TGTTCTTCTC
ACCTGCACCA ACTTTCTATG GAATAGTGAA GAAGAAGAGC GTGGAAGAGT TCAAGCCTGA TCCTTACTTA GCAACGGTTC
TGAATTGTGC TTTTTGGGTG TTCTATGGAA TGCCTTTTGT GCATCCAAAC AGCATTTTAG TTCTCACCAT CAATAGTGTT
GGGCTTGTGT TCGAATTTTT CTATCTTACC ATATATTATA TCTACGCCAC CAACAAAGGA CGGAAGAAGG TACTGATTTT
CCTTCTCATC GAGCTTATTT TCTTTGCTGC GGTTGCTCTT GTAACAATGC TGGCACTGCA TGGCACAAAG AAAAGGTCAT
TAGTGGTTGG TATTCTGTCT GATATCTTCA ATGTTATGAT GTATGTCTCT CCTCTTACAG TTATGGCAAA GGTTATAAAA
ACTAAGAGTG TGAAATACAT GCCATTTTGG CTTTCTGTGG CTAACTTCCT TAATGGTCTG TGTTGGACAA CATATGCTCT
CATCCACCCC TTTGACCTTT ATGTGCTGAT CAGCAACGGT ATTGGAGCAA TCTCCGGACT AGTTCAGCTC CTGTTATATG
CATGTTACTG TTCCTGCAAG AGTGAAAAAG ATGACGATGG TGATCATGAT TTGAAACCAG CTGGGGTTCA GCTCTCCAAC
ATAAATGGAA CAGTGGCTGT GTGATTACAC ATCAATATGG AGTCATAACT TTTTTTTCTC TTTTATTTTC TGTTTACTCC
TTCTTCACCT TATACTTCTT TCTGCCTCTT GAGTTTCAAA TGCAACAAAG AGATTTATAT GTGGACATAT AGAATGGTTG
CTTTTATAAT ACATATGCAT GCTTAATGCT AAGATTTACT TTGGATTTTA TTTTCAAGTT TTGTATGTCA ATTGTGTAAA
TACTTCATTA AACAATCGAA ATCAATTAAT TTGGC

>Vigan.11G020200.01
ATGGTGAACC CTGCAATTGC TCGTAACGTC GTCGGCATAA TAGGCAATGT CATCTCCTTT GGCCTGTTCT TCTCACCTGC
ACCAACTTTC TATGGAATAG TGAAGAAGAA GAGCGTGGAA GAGTTCAAGC CTGATCCTTA CTTAGCAACG GTTCTGAATT
GTGCTTTTTG GGTGTTCTAT GGAATGCCTT TTGTGCATCC AAACAGCATT TTAGTTCTCA CCATCAATAG TGTTGGGCTT
GTGTTCGAAT TTTTCTATCT TACCATATAT TATATCTACG CCACCAACAA AGGACGGAAG AAGGTACTGA TTTTCCTTCT
CATCGAGCTT ATTTTCTTTG CTGCGGTTGC TCTTGTAACA ATGCTGGCAC TGCATGGCAC AAAGAAAAGG TCATTAGTGG
TTGGTATTCT GTCTGATATC TTCAATGTTA TGATGTATGT CTCTCCTCTT ACAGTTATGG CAAAGGTTAT AAAAACTAAG
AGTGTGAAAT ACATGCCATT TTGGCTTTCT GTGGCTAACT TCCTTAATGG TCTGTGTTGG ACAACATATG CTCTCATCCA
CCCCTTTGAC CTTTATGTGC TGATCAGCAA CGGTATTGGA GCAATCTCCG GACTAGTTCA GCTCCTGTTA TATGCATGTT
ACTGTTCCTG CAAGAGTGAA AAAGATGACG ATGGTGATCA TGATTTGAAA CCAGCTGGGG TTCAGCTCTC CAACATAAAT
GGAACAGTGG CTGTGTGA

>Vigan.11G020200.01
MVNPAIARNV VGIIGNVISF GLFFSPAPTF YGIVKKKSVE EFKPDPYLAT VLNCAFWVFY GMPFVHPNSI LVLTINSVGL
VFEFFYLTIY YIYATNKGRK KVLIFLLIEL IFFAAVALVT MLALHGTKKR SLVVGILSDI FNVMMYVSPL TVMAKVIKTK
SVKYMPFWLS VANFLNGLCW TTYALIHPFD LYVLISNGIG AISGLVQLLL YACYCSCKSE KDDDGDHDLK PAGVQLSNIN
GTVAV*