GBrowse Details

Vigan.11G013800.01

Basic Information:
Name: Vigan.11G013800.01
Multiple alignment
Variant Information
Position: Chr11:1376797..1380854 (+ strand)
Length: 4058
Functional Information:
Description: Similar to Uncharacterized protein. [Q9SWS3, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: polygalacturonase activity (GO:0004650)
InterPro: Glycoside hydrolase, family 28 (IPR000743)
Parallel beta-helix repeat (IPR006626)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.00,0.05,0.00,30.49,0.19,23.12,0.05
Arabidopsis thaliana homolog: AT1G10640.1, AT1G60590.1, AT5G14650.1
Automatic updates:
Name: NM_001251162 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max polygalacturonase PG1 (LOC547542), mRNA.
PubMed ID: 10356800 NCBI(pubmed)
Status: Known Variant
Name: NM_001251175 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max polygalacturonase PG2 (LOC547543), mRNA.
PubMed ID: 10356800 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr11:1376797..1376865 (+ strand)
Length: 69
Type: five_prime_UTR
Position: Chr11:1376866..1377048 (+ strand)
Length: 183
Type: CDS
Position: Chr11:1377506..1377637 (+ strand)
Length: 132
Type: CDS
Position: Chr11:1377997..1378203 (+ strand)
Length: 207
Type: CDS
Position: Chr11:1378620..1378827 (+ strand)
Length: 208
Type: CDS
Position: Chr11:1379748..1379938 (+ strand)
Length: 191
Type: CDS
Position: Chr11:1380227..1380613 (+ strand)
Length: 387
Type: CDS
Position: Chr11:1380614..1380854 (+ strand)
Length: 241
Type: three_prime_UTR

>Vigan.11G013800.01 class=Sequence position=Chr11:1376797..1380854 (+ strand)
AAATCTCTTA TTCTCTTCAA ACCATCTTCT TCACCAACTA ACTTTGCATC TCTGTTTTCT CTTTCGAAAA TGAAGAACAT
GAACACGAAC ATAAAGACCA TTGCATTGAT CGTTGTAATA GCCTTTTCTG TGTTGTCTTC AAGCTGCACT GCCACACGTG
TCAGCCTCGG GAGGAAACTC AAAGCAGCTT CTGCTACTTT TAATGTATTG GACTATGGTG CCAAAGGTGA TGGTCATGCA
GATGATACAA AGGTGATTGA TTTTTCAATT CAAACCAGTT GTTCATTGGT TTCCCAAATG AATTCATTTA CCCTTTTTCT
TTCCATGGTC ATAAAATCTA CCTTGATCAG ATATAAGAGA ATTTTTCAAT ATATAAACGT TAAAAAGTAG ATTTTAAACG
TCACTCAATC TTATGAACTC TAAAGTCTGC GAGAGTTATT ATGCTCTTCA ACATAGTATA TAAAGTGTAT TAGAATTTCA
AGTGACTTTA AATCTAATAT TATATATATA TGAATGAGAA AATAGAACAT TATATAAAAG TGAAGATGGT TAATTTATAT
GTTAAGATTT TTAACAAAGA GTGATATCAA AATCTCTTAT GTGGTTGGAT TGATGTCTCA TTGATGTTAT ATTTTTTAAG
TTCTACTGTT GTTTTCATTA GTTTTTCCAT TTTTGAGTAT TAACTTGTAA CAGACAAAAA ATTATGCAGG CCTTTGAAGG
AGCATGGGAA GCTGCTTGTA AGGTGGAGGG TTCAACAATG GTTGTTCCAT CTGGTTCTGT ATTTTTGGTG AAACCAATCT
CTTTCTCAGG TCCTAACTGT GAGCCAAACA TTGTTTTTCA GGTGAAGACA TTATCCTCCT TCTTATTCTT TCCATTTTTC
TCTCTTATAC AAGACAAACA CTAAAACATA GGTCAAAGAC CCTTTTCAAG TTTTTGAGAA AATCTCTGTT TTTCTCATTT
CATTCCTTTG TATAATGACA TACAAAGACA AAATAGTGAA AACATTTGTA TTGAGATCCA ACTAGTTAAA GGAAAAGTCA
GTCTTTAAAA TGTTGTCACA TTGTAAAATC TTACTTCATA TGTCAATTTC TTCTTTTGGT TAAGAGTGTT GAAAGTATAT
TTCTGAATCA CCTTTTTTGA TTTACAAGAT ACAACTTTTA TATTTACTAA TGGCAATTGG TCATAAAAAA ACACATGTAG
TTAGATGGAA AAATCATTGC ACCTACAAGC TCTGCAGCTT GGGGCTCTGG CACCCTGCAA TGGCTTGAAT TTACAAAGCT
TAGAAAGATC ACAATAAGAG GTAAAGGTGT CATTGATGGC CAAGGCTCTG TTTGGTGGAA TGACTCACCC ACTTCCACAG
AAGTCATGCT GGAAAGCAGT GGAAGACTTC CAAGCACAAA ACCAACAGTA AGAATACTCC TTGCATCCTT AAAATTCACA
TTTCTTTATA ATACTACCTA AAGTGTTAGT CTAAGTCTGA TGTTGAATAA AAATATCAAA AATAGTATCA ATTTCTTATA
TAAATTGAAC TTTAGTGTAT TATTTCAATA AATTTTTCTT GACAGACTCA TTGATTGTAT CAGATTTTTA CTAAGGAATA
TCATATATAG TGTGAGTGTT GGAAGTCCAA AAATAAGATC AATTTAGAAT ATATAAGTGG GTGTCATTCT AATCTTAGAA
ATTGGTCTGG TAGAGTTGAG TTAAGCTTAA AATCTACTTC TTAACCCTAA GAAGATAACA TGGTTTATCG TTGAAACTAA
AATTCTGAGA AGATAACATA GTTTATCCTT GAAACTAAAA TTCTGAGGTG TTCTGTTATT TAGGCCCTGA GGTTCTATGG
AAGCGATGGT GTAACAGTGA CAGGAATAAC AATTCAGAAC AGCCAACAGA CACATCTGAA GTTTGATTCA AGCACAAACG
TTCAAGTGTT TGATATAAAC GTTTCATCAC CTGGTGATAG CCCCAACACT GATGGAATTC ATCTGCAGAA CTCACAGAAT
GTGGTCATCT ACAGCAGCAC ACTTGCTTGT GGTAAGCATG CATGCTTCTA AAATATAATC AAAATCTCAA AAAAACATCA
TTTTCATCAT ATCTTACATT AACAGGTTTC AGACAATGAT GTCACAAATA ATGTTCCATC TCGTGATGAA AGAAAAATTT
AATCCCAAAA TGGGTCCATT GTCTCAACTT GTATCAGTCA CAATCCAATA TAGTATAACT TCTAACTACC ATTCTATGAG
AGAAACAGCA TAAAATAAAG AGAAATTAAT ATATTATTAC AAACACTATC TCTTCTCGTG AATGACAAAA AAGTAAACAA
TATAATTTAC CAATTGTTCA TGCTATTAGA CCAGCAAAAT AAAATAAAGG AAAATATTAA AAATAACAGG GAGACTAATG
TCATCTGATT GTTCTAAGGT GAATTTTTTT GCATTAAAAG TAATTTTTTT TATATTAATT ATGGTGAATT GTTTATGTCA
AGAGTAATTT ATGATAATTA AAATTTGCTT CAACTTATTT ATACTTAATT CTTTTGTTAC AGCTCAATTT TTATTAGATG
ACAACGTAAA ATAGCATTAT ACTATGGATT ATTTTTCTTA AACTTAAATA TGAATAAAAA TAATTAATCT TCTGATTAAA
AATATTGGTT AATTAAGTTA TTCATATGAA AAATGACATT TTCTAGCCAA TATTTTAAAT TTTATGTATT TATATATATT
TGACTTAAAA GTATTTTGGA ATGATGACAT AACACAGAAT TGAGTAAATA GAACATGTTA CTTTATGTAA ATCTATCAAT
TTCATAAAGC TTTTGCTTAA ACTTCAATAT GGTGAAATTT TTTGTAGCTA AGTTCTCCAT AATTTTCTCC AATTGGAAAG
AAACAAGTTT GAAGTGTGAA ACATGGTGAA GAACTTGGTG TGAGTAAAAT CTGTTTTGTT AAAATGTGCA GGTGATGACT
GCATATCGAT TCAAACTGGT TGCTCAGACG TATATGTTCA TAACGTGAAT TGTGGACCTG GCCATGGAAT CAGTATTGGA
AGTCTTGGCA AAGAGAACAC CAAAGCCTGT GTTAGAAACA TCACTGTTCG AGATGTCACA ATCAAGAACA CCCTCACTGG
TGTTAGAATC AAAACATGGC AGGTAAACAT CAAATATCCT CAACTTTTTC TTTTTTTCTG GAAGGTTCTA GTCACGTGTC
AACTAGAAAT AAGATTTAAA GTATATAAGT GGATGCAAAC TTCCTCTTAT ATTATTTTTT AAATCGATTT TTTAAATCGA
TTTTGTAGGA TTAAATTAGA TTTAAAGTTT AATCTTTCGT AATATAGAAA CAAAGCTAAT TTAAAATATA GAATATATAC
GTAGATGGAA ATCTAGTCTT ACAAACTGGT TCTGTAAAAT TGAAAATTGT TGATGTTTAT TCATATGTAG GGAGGCTCCG
GCTCGGTCCA AAACATAATG TTCTCAAACG TGCAAGTTTC TGGAGTTGAA ACTCCCATCT CCATCGATCA ATACTATTGT
GATGGTGGAA AATGCGGGAA TGAGTCATCA GCAGTGGCAG TGTCAGGCAT ACAGTATGTG AACATAAAAG GAACATACAC
AAAAGAGCCA ATTTATTTTG CATGCAGTGA TAGCTTACCA TGCACTGGCA TAACCCTTGA CACCATTCAG CTACAATCAT
CTCAAAACCC TAACAATGTA CCCTTTTGTT GGGAAGCATT TGGAGAATTG AAGACCAAAA CAGTCCCTCC TGTTGAATGT
CTTCAGAGTG GAAACCCTTC AAAATCAGGA TTTGCTTCCA ACATTGATTC TTGCTGATCA TTTATCACCA CTATACTATG
TTAGGGTTAC ATAGATCAAT ATAATACATC ATAGAAAGTT GTTCTTAGTG GTTGCTTATC ATGATATATA TGTTAATAGT
AGTTCATATA TTCTTGTATT ATATGTAATT TGGGTGAGGA TTTAGAAGCC TATATATATA CATTTAGATT GAAAGGTTTA
TGATGTAGAA AAAATGTGTT TAGCCACATA TCTATGAATT ATATAATAAA TTTTCACA

>Vigan.11G013800.01
AAATCTCTTA TTCTCTTCAA ACCATCTTCT TCACCAACTA ACTTTGCATC TCTGTTTTCT CTTTCGAAAA TGAAGAACAT
GAACACGAAC ATAAAGACCA TTGCATTGAT CGTTGTAATA GCCTTTTCTG TGTTGTCTTC AAGCTGCACT GCCACACGTG
TCAGCCTCGG GAGGAAACTC AAAGCAGCTT CTGCTACTTT TAATGTATTG GACTATGGTG CCAAAGGTGA TGGTCATGCA
GATGATACAA AGGCCTTTGA AGGAGCATGG GAAGCTGCTT GTAAGGTGGA GGGTTCAACA ATGGTTGTTC CATCTGGTTC
TGTATTTTTG GTGAAACCAA TCTCTTTCTC AGGTCCTAAC TGTGAGCCAA ACATTGTTTT TCAGTTAGAT GGAAAAATCA
TTGCACCTAC AAGCTCTGCA GCTTGGGGCT CTGGCACCCT GCAATGGCTT GAATTTACAA AGCTTAGAAA GATCACAATA
AGAGGTAAAG GTGTCATTGA TGGCCAAGGC TCTGTTTGGT GGAATGACTC ACCCACTTCC ACAGAAGTCA TGCTGGAAAG
CAGTGGAAGA CTTCCAAGCA CAAAACCAAC AGCCCTGAGG TTCTATGGAA GCGATGGTGT AACAGTGACA GGAATAACAA
TTCAGAACAG CCAACAGACA CATCTGAAGT TTGATTCAAG CACAAACGTT CAAGTGTTTG ATATAAACGT TTCATCACCT
GGTGATAGCC CCAACACTGA TGGAATTCAT CTGCAGAACT CACAGAATGT GGTCATCTAC AGCAGCACAC TTGCTTGTGG
TGATGACTGC ATATCGATTC AAACTGGTTG CTCAGACGTA TATGTTCATA ACGTGAATTG TGGACCTGGC CATGGAATCA
GTATTGGAAG TCTTGGCAAA GAGAACACCA AAGCCTGTGT TAGAAACATC ACTGTTCGAG ATGTCACAAT CAAGAACACC
CTCACTGGTG TTAGAATCAA AACATGGCAG GGAGGCTCCG GCTCGGTCCA AAACATAATG TTCTCAAACG TGCAAGTTTC
TGGAGTTGAA ACTCCCATCT CCATCGATCA ATACTATTGT GATGGTGGAA AATGCGGGAA TGAGTCATCA GCAGTGGCAG
TGTCAGGCAT ACAGTATGTG AACATAAAAG GAACATACAC AAAAGAGCCA ATTTATTTTG CATGCAGTGA TAGCTTACCA
TGCACTGGCA TAACCCTTGA CACCATTCAG CTACAATCAT CTCAAAACCC TAACAATGTA CCCTTTTGTT GGGAAGCATT
TGGAGAATTG AAGACCAAAA CAGTCCCTCC TGTTGAATGT CTTCAGAGTG GAAACCCTTC AAAATCAGGA TTTGCTTCCA
ACATTGATTC TTGCTGATCA TTTATCACCA CTATACTATG TTAGGGTTAC ATAGATCAAT ATAATACATC ATAGAAAGTT
GTTCTTAGTG GTTGCTTATC ATGATATATA TGTTAATAGT AGTTCATATA TTCTTGTATT ATATGTAATT TGGGTGAGGA
TTTAGAAGCC TATATATATA CATTTAGATT GAAAGGTTTA TGATGTAGAA AAAATGTGTT TAGCCACATA TCTATGAATT
ATATAATAAA TTTTCACA

>Vigan.11G013800.01
ATGAAGAACA TGAACACGAA CATAAAGACC ATTGCATTGA TCGTTGTAAT AGCCTTTTCT GTGTTGTCTT CAAGCTGCAC
TGCCACACGT GTCAGCCTCG GGAGGAAACT CAAAGCAGCT TCTGCTACTT TTAATGTATT GGACTATGGT GCCAAAGGTG
ATGGTCATGC AGATGATACA AAGGCCTTTG AAGGAGCATG GGAAGCTGCT TGTAAGGTGG AGGGTTCAAC AATGGTTGTT
CCATCTGGTT CTGTATTTTT GGTGAAACCA ATCTCTTTCT CAGGTCCTAA CTGTGAGCCA AACATTGTTT TTCAGTTAGA
TGGAAAAATC ATTGCACCTA CAAGCTCTGC AGCTTGGGGC TCTGGCACCC TGCAATGGCT TGAATTTACA AAGCTTAGAA
AGATCACAAT AAGAGGTAAA GGTGTCATTG ATGGCCAAGG CTCTGTTTGG TGGAATGACT CACCCACTTC CACAGAAGTC
ATGCTGGAAA GCAGTGGAAG ACTTCCAAGC ACAAAACCAA CAGCCCTGAG GTTCTATGGA AGCGATGGTG TAACAGTGAC
AGGAATAACA ATTCAGAACA GCCAACAGAC ACATCTGAAG TTTGATTCAA GCACAAACGT TCAAGTGTTT GATATAAACG
TTTCATCACC TGGTGATAGC CCCAACACTG ATGGAATTCA TCTGCAGAAC TCACAGAATG TGGTCATCTA CAGCAGCACA
CTTGCTTGTG GTGATGACTG CATATCGATT CAAACTGGTT GCTCAGACGT ATATGTTCAT AACGTGAATT GTGGACCTGG
CCATGGAATC AGTATTGGAA GTCTTGGCAA AGAGAACACC AAAGCCTGTG TTAGAAACAT CACTGTTCGA GATGTCACAA
TCAAGAACAC CCTCACTGGT GTTAGAATCA AAACATGGCA GGGAGGCTCC GGCTCGGTCC AAAACATAAT GTTCTCAAAC
GTGCAAGTTT CTGGAGTTGA AACTCCCATC TCCATCGATC AATACTATTG TGATGGTGGA AAATGCGGGA ATGAGTCATC
AGCAGTGGCA GTGTCAGGCA TACAGTATGT GAACATAAAA GGAACATACA CAAAAGAGCC AATTTATTTT GCATGCAGTG
ATAGCTTACC ATGCACTGGC ATAACCCTTG ACACCATTCA GCTACAATCA TCTCAAAACC CTAACAATGT ACCCTTTTGT
TGGGAAGCAT TTGGAGAATT GAAGACCAAA ACAGTCCCTC CTGTTGAATG TCTTCAGAGT GGAAACCCTT CAAAATCAGG
ATTTGCTTCC AACATTGATT CTTGCTGA

>Vigan.11G013800.01
MKNMNTNIKT IALIVVIAFS VLSSSCTATR VSLGRKLKAA SATFNVLDYG AKGDGHADDT KAFEGAWEAA CKVEGSTMVV
PSGSVFLVKP ISFSGPNCEP NIVFQLDGKI IAPTSSAAWG SGTLQWLEFT KLRKITIRGK GVIDGQGSVW WNDSPTSTEV
MLESSGRLPS TKPTALRFYG SDGVTVTGIT IQNSQQTHLK FDSSTNVQVF DINVSSPGDS PNTDGIHLQN SQNVVIYSST
LACGDDCISI QTGCSDVYVH NVNCGPGHGI SIGSLGKENT KACVRNITVR DVTIKNTLTG VRIKTWQGGS GSVQNIMFSN
VQVSGVETPI SIDQYYCDGG KCGNESSAVA VSGIQYVNIK GTYTKEPIYF ACSDSLPCTG ITLDTIQLQS SQNPNNVPFC
WEAFGELKTK TVPPVECLQS GNPSKSGFAS NIDSC*