GBrowse Details

Vigan.11G004000.01

Basic Information:
Name: Vigan.11G004000.01
Multiple alignment
Variant Information
Position: Chr11:464494..466615 (+ strand)
Length: 2122
Functional Information:
Description: Similar to Uncharacterized protein. [I1K1P2, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Cellular Component: large ribosomal subunit (GO:0015934)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L22/L17 (IPR001063)
Ribosomal protein L22, bacterial/chloroplast-type (IPR005727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.22,54.27,54.04,130.71,19.85,38.23,14.00,26.32
Arabidopsis thaliana homolog: ATCG00810.1
Structure :
Position: Chr11:464494..464633 (+ strand)
Length: 140
Type: five_prime_UTR
Position: Chr11:464634..464871 (+ strand)
Length: 238
Type: CDS
Position: Chr11:465874..466259 (+ strand)
Length: 386
Type: CDS
Position: Chr11:466260..466615 (+ strand)
Length: 356
Type: three_prime_UTR

>Vigan.11G004000.01 class=Sequence position=Chr11:464494..466615 (+ strand)
AAAGAAAATA AATAATTAAT TAGCTAAATA TTAATTTTGA AAAAGAACCG AATTGAAACC CCTCTCTCCC CTTTATCTTA
TCCATCTCAT TCTCACTCCT TGGTTTGCAG AGCAGGGGTA AGTAACATAG CATAACAGAC ATGGCTGTTT CTCTGTCGGT
GAACCGTCCT CTCCTTCGTC TTCACCACAA GCATCCACCT TTACCTGTGG GCATCGCTCC CCAACTCCAT TTCCACTGTC
AGCCCAAGCT CGCCGGAATT CGATGCTCCT CCTCGCCCTC CCATTTTACC GACAAAACCC TCATTTCCAT CAAACCTAAC
ACTTCCCACA TCAATGACAA CCCCCTCGCT TGTCGCTTCC ACGCTTCCCA GTTTGGAGGT GCGCTCTTTC TCTTTCTCCT
TCTCCTTCTC CTTCATTTTT ATTGACCCTT CTCCATAGCA TGCTTCTTCT ATTTCTCTTC TGATTTCAAC ATCGCAACCC
TAACCTAACT ATTTACTTAC TCAATTTTCT TGTTTGCGCT CCATTTACGT CAAATATTAG CCCCAATTTA TTCTATTACA
GTCTAATGCG CCTTCTTCTC ACCATATATA CCCTTCATTT AGATATATTA CAATCGGCAG GGTCTCAAAA GGACCTTTTT
CTTCATATTA TGTGTCCTTC TTTCATCTTG TTTCCAGGGG TAAAATTCAG TAATCAGTAT TGTATTGTGA ATTCCCAATT
TCACAATTAT GAATGTTTAT TTGTCAACAT GGTTTTATTC AGTAATCAGT GTTCTGTTGT CAATTCCCAA TTCCTATGGC
TGCGTAATGA TTTGAGTTAG TATTGGTTGA GAGTTCTACA AGTTTTAACA TCTGCATTAG TTATCCATGG GGCACGTCAA
CCACATCTAT CATCCAGTGC ATTCCAACGC CAATCGGATG CCTTTGCCTC TCATACACTT CTTGAGACTG TTTTTCAACT
GTAGCATAAA CTTAGTGGCG ATTCTTTAAT TCTTGAAAGT TTCTGTAGCT TTTAATTAAT GTTCAATAAA TTGGTTGAGG
CGTATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATAGCAT ACCACCATCA GTTCATGTAC
GTTTCCTTCA ATTAAAGGGT GACAGTTCTT CCTAAATGTT GGTGTGTGAA ATGCAAAGAA GACATGAGTG ACTGACTGAA
GAGTATGAGG TCTTTCTGAG TCTCACTCTC ACACAAACAA AGGCTTACAT TAGAAATTTT AGGCTGTCAA ATATTTAGCT
TTTTACATTT TACGGGTCTA GTTGTATCTG GTTAGAGATC TGCAGCTTAG AAGGAATTGG GAAAAGATGT AACCGATATT
TAAATTTGAT GCTGGTGCAG GACAGGAGAG CAGCAAATCC GTGGAAGCGT ACGCTGTTGG GCGAAACATT CGCATGTCCG
CTAATAAAGC TCGAAGAGTG ATCGATCAGA TTCGTGGACG AAAATACGAT GAAACACTTA TGATATTAGA ACTCATGCCT
TATCGAGCCT GTGAAGCCAT TCTGAAGATA GTGTTTTCTG CTGGAGCAAA TGCTACCAAT AACCTGGGTT TAAGCAAGGG
AAGTTTAGTT ATCAGTAAAG CAGAGGTTAA TGAAGGAAGA ACAATGAAAA GGGTAAAACC TGTGGCTCGA GGGCGTGCTC
ATCCAATTAA AAAGCGCACT TGTCATATAA CCGTCACTGT AAAAGGCTCA CCAAGTGAGT CCATCGTGGA AGCGAGCCCT
GCATAATCCT TTTCGGACTA AGTGTATGTA CGCCTTATGA TGAGTTAGTT CCCTTTACCC ATTGTATTTG ATCAAAATTT
CTGTATTTCG ACATTATGTA CTTCATTTAT ACCGTGTGAC TTGACTTGTA GAGGAGTGAT GAACATGCTT AAATATTCAA
TTTAATTAGT CCTGAAAATG AATGGTTTTG TATTGCAATT TGAAAAAAAT AAATAAATTT GACATTGCTA ATACTTACCA
AAAATAAGTA ATGTAGATTC AGCATCCAGC ACTAAGCAAA CAATTCTGAG TTACTAAAGT TAGTTCCTTC TATTGGTAAT
GTATTACGTA GTACATGTCT GATATCACGG TGGATATGAA AG

>Vigan.11G004000.01
AAAGAAAATA AATAATTAAT TAGCTAAATA TTAATTTTGA AAAAGAACCG AATTGAAACC CCTCTCTCCC CTTTATCTTA
TCCATCTCAT TCTCACTCCT TGGTTTGCAG AGCAGGGGTA AGTAACATAG CATAACAGAC ATGGCTGTTT CTCTGTCGGT
GAACCGTCCT CTCCTTCGTC TTCACCACAA GCATCCACCT TTACCTGTGG GCATCGCTCC CCAACTCCAT TTCCACTGTC
AGCCCAAGCT CGCCGGAATT CGATGCTCCT CCTCGCCCTC CCATTTTACC GACAAAACCC TCATTTCCAT CAAACCTAAC
ACTTCCCACA TCAATGACAA CCCCCTCGCT TGTCGCTTCC ACGCTTCCCA GTTTGGAGGA CAGGAGAGCA GCAAATCCGT
GGAAGCGTAC GCTGTTGGGC GAAACATTCG CATGTCCGCT AATAAAGCTC GAAGAGTGAT CGATCAGATT CGTGGACGAA
AATACGATGA AACACTTATG ATATTAGAAC TCATGCCTTA TCGAGCCTGT GAAGCCATTC TGAAGATAGT GTTTTCTGCT
GGAGCAAATG CTACCAATAA CCTGGGTTTA AGCAAGGGAA GTTTAGTTAT CAGTAAAGCA GAGGTTAATG AAGGAAGAAC
AATGAAAAGG GTAAAACCTG TGGCTCGAGG GCGTGCTCAT CCAATTAAAA AGCGCACTTG TCATATAACC GTCACTGTAA
AAGGCTCACC AAGTGAGTCC ATCGTGGAAG CGAGCCCTGC ATAATCCTTT TCGGACTAAG TGTATGTACG CCTTATGATG
AGTTAGTTCC CTTTACCCAT TGTATTTGAT CAAAATTTCT GTATTTCGAC ATTATGTACT TCATTTATAC CGTGTGACTT
GACTTGTAGA GGAGTGATGA ACATGCTTAA ATATTCAATT TAATTAGTCC TGAAAATGAA TGGTTTTGTA TTGCAATTTG
AAAAAAATAA ATAAATTTGA CATTGCTAAT ACTTACCAAA AATAAGTAAT GTAGATTCAG CATCCAGCAC TAAGCAAACA
ATTCTGAGTT ACTAAAGTTA GTTCCTTCTA TTGGTAATGT ATTACGTAGT ACATGTCTGA TATCACGGTG GATATGAAAG

>Vigan.11G004000.01
ATGGCTGTTT CTCTGTCGGT GAACCGTCCT CTCCTTCGTC TTCACCACAA GCATCCACCT TTACCTGTGG GCATCGCTCC
CCAACTCCAT TTCCACTGTC AGCCCAAGCT CGCCGGAATT CGATGCTCCT CCTCGCCCTC CCATTTTACC GACAAAACCC
TCATTTCCAT CAAACCTAAC ACTTCCCACA TCAATGACAA CCCCCTCGCT TGTCGCTTCC ACGCTTCCCA GTTTGGAGGA
CAGGAGAGCA GCAAATCCGT GGAAGCGTAC GCTGTTGGGC GAAACATTCG CATGTCCGCT AATAAAGCTC GAAGAGTGAT
CGATCAGATT CGTGGACGAA AATACGATGA AACACTTATG ATATTAGAAC TCATGCCTTA TCGAGCCTGT GAAGCCATTC
TGAAGATAGT GTTTTCTGCT GGAGCAAATG CTACCAATAA CCTGGGTTTA AGCAAGGGAA GTTTAGTTAT CAGTAAAGCA
GAGGTTAATG AAGGAAGAAC AATGAAAAGG GTAAAACCTG TGGCTCGAGG GCGTGCTCAT CCAATTAAAA AGCGCACTTG
TCATATAACC GTCACTGTAA AAGGCTCACC AAGTGAGTCC ATCGTGGAAG CGAGCCCTGC ATAA

>Vigan.11G004000.01
MAVSLSVNRP LLRLHHKHPP LPVGIAPQLH FHCQPKLAGI RCSSSPSHFT DKTLISIKPN TSHINDNPLA CRFHASQFGG
QESSKSVEAY AVGRNIRMSA NKARRVIDQI RGRKYDETLM ILELMPYRAC EAILKIVFSA GANATNNLGL SKGSLVISKA
EVNEGRTMKR VKPVARGRAH PIKKRTCHIT VTVKGSPSES IVEASPA*