GBrowse Details

Vigan.10G234400.01

Basic Information:
Name: Vigan.10G234400.01
Multiple alignment
Variant Information
Position: Chr10:27733299..27736721 (+ strand)
Length: 3423
Functional Information:
Description: Similar to NADH-ubiquinone oxidoreductase subunit B17.2, putative. [B9S202, Ricinus communis]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137)
Molecular Function: electron carrier activity (GO:0009055)
InterPro: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (IPR007763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.66,32.96,70.44,32.22,102.60,90.50,61.39,43.46
Arabidopsis thaliana homolog: AT3G03100.1
Automatic updates:
Name: NM_001248156 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500489 (LOC100500489), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248687 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500270 (LOC100500270), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:27733299..27733345 (+ strand)
Length: 47
Type: five_prime_UTR
Position: Chr10:27733346..27733434 (+ strand)
Length: 89
Type: CDS
Position: Chr10:27733770..27733796 (+ strand)
Length: 27
Type: CDS
Position: Chr10:27734289..27734380 (+ strand)
Length: 92
Type: CDS
Position: Chr10:27735965..27736074 (+ strand)
Length: 110
Type: CDS
Position: Chr10:27736193..27736345 (+ strand)
Length: 153
Type: CDS
Position: Chr10:27736346..27736721 (+ strand)
Length: 376
Type: three_prime_UTR

>Vigan.10G234400.01 class=Sequence position=Chr10:27733299..27736721 (+ strand)
ACCAAACGCA GCCTTAGCAA TTGTCCAAAA GGAGGAAGAA GAGCGACATG GCGTCGGTGG TGAAGAATGT TCTGAAATCG
ATCAGAGAAA AGGGTTTCGG TACTTTCCTC AGAGAGCTTA AGGATGAAGG CTACCTGTTT GTTCCTTTCT CTTTCGATTT
TAATATTCCA TAATTTCTCA CTTCCAATTC TGATCATATG GTTCCATATT TCTGTTCTTC AACCGATTTT GTCCCATTCT
TATTAATTTG CGGCTGCCTT TCGATCTCTT TCTCTGGAAA ATGTAATTTA GGAGATGAAA TGAAACTGAG ATTCGATTTA
ATAGCTTTTT GTTAATTTAG TGTTGCGATT GTCAAAGGAA CTTTGTAGTG CATTTATGTT TTACACTGTT TAGGGTTCCT
TTGATTCCGT GAACAATGTA GATGCCTTTG TGGTGTGCTG ATATTTTTTC CGTTATGATT TGAATTTTCA GGAGATGCCT
TCCGGATGGA AATCTCTTGT AAGTCAATTG CTTTTCTTGA TATCTTTTCA TTTTTCATTC CAATTCCCAC TCTCTATGAA
TGCCAAATTA TGACTTCTCA TTTGATGATT GGATGCCTTT CACTGTGTTT TGGGTCGCTG CCTTTCCTAA TGCTTCATGA
ATATATAAAG TGTAGAAAGA CATAGTAGAG TACTGGGTGC AATTGAAGGA GCATTTCCTA TCATTCAGGG TGGAGTATGA
GAAGGACAAG CGTGTGTCAA AAAACATATA CACATTAGCT TTGTATCTTC AAATGTCCCT CTTAGATATA GACGGTTTCA
CTCTAGGTCG AGTTGAGTGG GCTGTATTGT TCATTGCAAT TAGATTTAGA TTTATTTTAA TTGTATGTGG CTTCTTGCAA
AATGATGTAT GTCCTCTTTG TATTGGAACT TTTCTCCATG AGATCTTAAC TCCCTTCTGG TACTAATATT TCTCCTCTTC
CAATCTAATT ACGTTTTTAA TTTTATGCAG GCAAACCAAG ATCCACAATA TTGGGGCAAC GGTTGTTGGT GTTGATAAAT
TCGGTAACAA GTATTATGAG AAGCTTGGAG ACACACAGTA TGGTAAGTGT GTTTCTCATT CTACACGTAT GTGTGGTTTA
TCCAGCAAAT TACACTTGAC TAAAAACAGC AAATATAACC TATCTACATG GAAATCTAGC ATTAACATTC TCACTATTGA
CATATTTAAC AGGAAATTGA TAATGTGAAA TGTTTTGGCT TTTCAAATGC TTTTGTTAGG CCTCTTATAA TTTATAAGAG
GAGAACTAGA AATTAGGTTC TGAATTAGGA TTGAATTGTT CTAGCCGTTA TTAAACAGTT AGCGGTTTTT TATTCAGTTG
TAGCAGTTCT TTTCATGGGC AAGCATAACT GCCTCTAGGT GGTTATTGAT CAGGGGAGAA AAATAGAGGA TATGGGACAA
AACGAGAGAG GAGGGAAGAT AGAAGATGGT TAGGCAGGGA GAGGCCAAGC TCTCAACAAA TCTTGGAAGG GGACCTCTCA
TTTAATTTCA CTACGTTCTA GTGTAGTTGG TAACTAAGTA TCACTTTCGT TGAATAAAGT TCAGTTCATC TTTTTATACC
AGTTGGTTTC TATCAGCTTC CTCACAACAG TTGCTTAAGG GTAGAATACT ATGATATGAA TGTATTTGCT TAAGGGTAAA
AAGCTAAATC TAATTTTTCT TACTTTTATT TGTTTGAATG TATTTTCTGC ACTGATGGTG AACGTTCAGT GTGCTTTTGA
CGTGTATAAA TTTTATATTT ATTGATTGAT ATGTTACTTA TGAGCTATCT GTTATCATTG TTGATGCCAA TTTTGTTAAT
GTCGTGTTAT TTTAATCTTC TGACTCTTCG TATTTTTTTC TGTCTTTTAA TTAATGATTT ATTGTATGCT ATGTTATTAT
ATAAACTTGC AAGTGAGTTA AGATTCAAAC TTTGATTTTC AGTAATGTGT TTGGATAGGA AATTTTAAGA AGGGAATGCA
GATTTAAGGG GGCAATTAAG TTTTTTACCC CGAAGTCCTC ATTTGGTTTG GGTATTTAGT TTTAAGGTTT TAGCAAAGTT
TTTCATTCTT TAAAATGAGG AATTTGAAAT TTTAGGTTAT GACGATAGAT GGAATGCTGA TCACCAAAAA AAAAAAAAGT
CGATAGATGG AATTTTAAAA TTCCTTAGAT CTCTGTCTCT ATTCTGTTAT GAAGTACCTA GTGCTAGCTT GTAATCCGTT
TCTGCTTCTG TAAATACAAC ATTATTTTCG AGAGAAATTA TCAGCCTTCT GCATTCTTGT TTATCCTTTC TACAATCACT
TTCAGTTGTC AACGTTCCGC TGGTTTTTCT TCATCCTTGC ATTTGATATC TTTCGGAGCC TCTTTCAAAC CATCTTTCTG
TAATTATTTT CATCCAATAG ATTGTTTTTT CTGGATTTGG GTGAAGTGGA TGGATGATTC AAGGGCAATG TCCGTAAGTT
TCGGTAAAAG TCAGCTATAT CTTGCAGCAC TAGGGGATAA TTGCCTTTTA AATTTGGAAA TGCTTTCTTT TACCACATTT
TAAATTATTC TAAATTTGGA AATTCTTTAT CCAAACATGA GGTAAAATCC ATGTTTGACA TAATATCGAA TTTGTTGATG
TCATGATTTT TCCTACTATT TGGCAGGAAG ACACAGGTGG GTTGAATATG CAGAGAAAAG TAGGTATAAT GCCTCCCAGG
TTCCGCCTGA ATGGCATGGC TGGCTCCACT TCATAACTGA TCACACAGGA GATGAGGTAA TTCTTTTCTT TTCCTATTTC
CTTGTTTTGT GAATGCCACA TGGTGAGAAA ATCTGAGGCC CCATGAAAAT TGTTGAGGTA GTGATAATAA TAAAAATAAT
AATAATTGTT GCAGCTTCTT CTACTGAAAC CGAAAAGGTA TGGTGTTGAA CACAAAGAAA ATTTGTCTGG AGAAGGTGAA
CAGTATATCT ATCATTCGAA GGGACATGCC CTTAATCCAG GGCAGAGAGA CTGGACCAGG TACCAACCAT GGGAGTCCAA
GGCCTGAACC GTCAATATGG GGCAGCTCAG TTGCAGATGT CCTGGATGTT TGTTTTTTTA ATTCTCAAGA ATTTTTTTTG
CCTTAAGTTA ATGAGGTGGA AAGCTGCTTT TTCCTTTTTT AACAATTAAC AATAAAACGA ATTATTAGTG TTGAAAACAG
ACAAATTCGC ATTGAACTTC AAAATCTTTT AGTATAATGT ATGCGATCGT GTTAAAAAAG GATATGCTCT TATTTGCAAC
GATATTTTGC CTAGTCTATT ATTTGTACGT GTATTATTTT AATTAACCTG TCTGATCCAG TGATTGTAGT TACTTGTTAA
ACCGAACACC TTATTGGGAA ACTGTGAACA CAGTTCTTTA TCTGAAGGAT AATTATCGGC TAA

>Vigan.10G234400.01
ACCAAACGCA GCCTTAGCAA TTGTCCAAAA GGAGGAAGAA GAGCGACATG GCGTCGGTGG TGAAGAATGT TCTGAAATCG
ATCAGAGAAA AGGGTTTCGG TACTTTCCTC AGAGAGCTTA AGGATGAAGG CTACCTGAGA TGCCTTCCGG ATGGAAATCT
CTTGCAAACC AAGATCCACA ATATTGGGGC AACGGTTGTT GGTGTTGATA AATTCGGTAA CAAGTATTAT GAGAAGCTTG
GAGACACACA GTATGGAAGA CACAGGTGGG TTGAATATGC AGAGAAAAGT AGGTATAATG CCTCCCAGGT TCCGCCTGAA
TGGCATGGCT GGCTCCACTT CATAACTGAT CACACAGGAG ATGAGCTTCT TCTACTGAAA CCGAAAAGGT ATGGTGTTGA
ACACAAAGAA AATTTGTCTG GAGAAGGTGA ACAGTATATC TATCATTCGA AGGGACATGC CCTTAATCCA GGGCAGAGAG
ACTGGACCAG GTACCAACCA TGGGAGTCCA AGGCCTGAAC CGTCAATATG GGGCAGCTCA GTTGCAGATG TCCTGGATGT
TTGTTTTTTT AATTCTCAAG AATTTTTTTT GCCTTAAGTT AATGAGGTGG AAAGCTGCTT TTTCCTTTTT TAACAATTAA
CAATAAAACG AATTATTAGT GTTGAAAACA GACAAATTCG CATTGAACTT CAAAATCTTT TAGTATAATG TATGCGATCG
TGTTAAAAAA GGATATGCTC TTATTTGCAA CGATATTTTG CCTAGTCTAT TATTTGTACG TGTATTATTT TAATTAACCT
GTCTGATCCA GTGATTGTAG TTACTTGTTA AACCGAACAC CTTATTGGGA AACTGTGAAC ACAGTTCTTT ATCTGAAGGA
TAATTATCGG CTAA

>Vigan.10G234400.01
ATGGCGTCGG TGGTGAAGAA TGTTCTGAAA TCGATCAGAG AAAAGGGTTT CGGTACTTTC CTCAGAGAGC TTAAGGATGA
AGGCTACCTG AGATGCCTTC CGGATGGAAA TCTCTTGCAA ACCAAGATCC ACAATATTGG GGCAACGGTT GTTGGTGTTG
ATAAATTCGG TAACAAGTAT TATGAGAAGC TTGGAGACAC ACAGTATGGA AGACACAGGT GGGTTGAATA TGCAGAGAAA
AGTAGGTATA ATGCCTCCCA GGTTCCGCCT GAATGGCATG GCTGGCTCCA CTTCATAACT GATCACACAG GAGATGAGCT
TCTTCTACTG AAACCGAAAA GGTATGGTGT TGAACACAAA GAAAATTTGT CTGGAGAAGG TGAACAGTAT ATCTATCATT
CGAAGGGACA TGCCCTTAAT CCAGGGCAGA GAGACTGGAC CAGGTACCAA CCATGGGAGT CCAAGGCCTG A

>Vigan.10G234400.01
MASVVKNVLK SIREKGFGTF LRELKDEGYL RCLPDGNLLQ TKIHNIGATV VGVDKFGNKY YEKLGDTQYG RHRWVEYAEK
SRYNASQVPP EWHGWLHFIT DHTGDELLLL KPKRYGVEHK ENLSGEGEQY IYHSKGHALN PGQRDWTRYQ PWESKA*