GBrowse Details

Vigan.10G228400.01

Basic Information:
Name: Vigan.10G228400.01
Multiple alignment
Variant Information
Position: Chr10:27337760..27341209 (- strand)
Length: 3450
Functional Information:
Description: Similar to Uncharacterized protein. [I1JAG0, Glycine max]
GO: Biological Process: RNA processing (GO:0006396)
Cellular Component: nucleus (GO:0005634)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: RNA binding (GO:0003723)
InterPro: RNA recognition motif domain (IPR000504)
RNA-binding motif protein 8 (IPR008111)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:257.95,154.42,39.36,45.56,61.39,78.94,57.43,42.26
Arabidopsis thaliana homolog: AT1G51510.1
Automatic updates:
Name: NM_001249233 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527187 (LOC100527187), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:27337760..27338387 (- strand)
Length: 628
Type: three_prime_UTR
Position: Chr10:27338388..27338433 (- strand)
Length: 46
Type: CDS
Position: Chr10:27338989..27339140 (- strand)
Length: 152
Type: CDS
Position: Chr10:27340574..27340710 (- strand)
Length: 137
Type: CDS
Position: Chr10:27340797..27341070 (- strand)
Length: 274
Type: CDS
Position: Chr10:27341071..27341209 (- strand)
Length: 139
Type: five_prime_UTR

>Vigan.10G228400.01 class=Sequence position=Chr10:27337760..27341209 (- strand)
CCTAGATAAA CCCCAAAAGG ATTTTACCAT TGCAAGCAAC AAAATACACA TAAAAGGGTT CTCTCTCTTC ACTCGCAGAA
CGTGCTCCAA CTCATATCGA ACTCAATTTT ACTGTGTCGA GAAAGAAGCA GAGGCGGAAA TGCAAGGTGG CGCAGCCGAC
GGAGAAGCCT TGGATTTCGA GCCCGAGGAC GATGACTTGA TGGACGAGGA CGGCGCTCCC GACGCCGACG CTTCTCCGCC
TCACCCTAAG CTTAAATCAG CCATCACCGC CGCAGCTACT TCCTCTCTCA CCGCTCCCAA GAAGACCAAG GGTCGCGGTT
TCCGTCAGGA CACCGATGCC AACCGCAACA CTCGACTCTC CGGCTCCGAC TTCGACTCCC TCACCACCGA GGGTGGCCCT
GGACCACAGA GATGTCAGTC CCCTCTCCCT CTTAGGGTTA GGGTTTTGCT TTTTTATTTA TTTAATTTAA TTATTTATGT
TTTGCTTGGC TTGTTCTAGC CATTGAAGGA TGGATCATTC TGGTGACCGG CGTGCACGAG GAAGCGCAAG AGGATGATTT
GCAAAACGCC TTTGGTGAAT ACGGAGAGAT TAAGAACCTG CATTTGAATC TCAATCGCCG CACTGGTTTT GTCAAAGTAA
CTCATTGTTC CTCTTTTCTT TTCTTTGTTT CTTTCTTTGT TACTATTGAT TTATTGAGTT TTGTAGTCAT TATTATAATC
CATTGGATAC TCATACTATC TAGTCACTGT CTGGCTGTAT AAAGCCTTTT GGTTTTTTTA TTACGGTGAA ATTTAACTCT
ACTTTCACAT AACTTCGTGA CTGCTTTCGT TTCAACTAAC ACCTTTTTCA TTGTAATTGA TCTTGACACC ATGACAACTA
TATGGATGGT TATAACCTAA GTAGAACATG ATAAATGTTT GATCTGCTTG GTTTTTATTG ATTTTCATCT GGCATTGTGT
TGTCATCGTC CTGATCGCTG ATCCACTTTG GTGATTTGAG TCATTTGACT TTTGATGTGA TTTTTCTTTT AGTTTGGATC
CTATTTTACT TGTCATGGCT CTTGGTTTGG AATTTGTTTC ACGCGGTGGA TAATTACTGG CCAAAGCTGA TATTTTACCG
TTGAGTTGCG AGTATAAGTT CAATACCATC ATGATGTCTC TACTTGGCGA GAATGTGAAC GAAGAAAGAT ACAATTCTTC
CTAACCATGT CTAAGTATTG TCATCTCTTC ACCATTTCTG TTGCATTGTA TCCTTGTTTA CCTCTGTCCC TTCATTCAAC
TAGTTCATTT AATTAAAAAG ACAAGTCTCT TTTTAGATTC TTTGTAAATC ATAAGCACGG TTTATTGACA AGTCTCTATC
CTTCTGCCCA TAACTTTGCT TACCACATTT TTCTATCCTA CTGGCCTGAA TTTTGTTTGT CTTGATGATT AATTAGCCCA
AATCTGTTAC TCTGTGGAAT GCTGTTAATA TGTTTCCCAC TTATAGAAAA GGATTTGAAA TTGGCAGTCC CTCCATTATT
CTATCCTTCT ACTGGCAAGA ATTTTGTTTG TCTTGGTGAT TAATTATTGG CCAAATCTGT TACTTAGTGG AATGCTGTTA
ATATGTTTCC CATTGATAGA AAAGGATTTG AAATTGGCCG CCCCTCCATT ATTTTCTTAT AAATTGATGG TACTGCAAGT
ATATCATCTT CTTGTCTTGA GTTTGAAAGA ATCCGAGGGA AGAAAGATAC AATTTTTCTA GCCATGTATA GGTTACTGTT
ATTTCTTCAT CATCTCTATT ATATTGTACT CTTGTACACC TCTGCCCCTA CTTGTCCATT TTATTAGAAG ACGAGAGTCT
CTTGGTGTAG AATATTATTA AGCCGGGTTA ATTCCTGTCT AGCAATATTT TCTGCCATCT GTGCTTTTTT TTACGAACAG
CATTGATTGA CTTTTGATTT AAAAGAAATA GTATTAGGAA TGGAAATTTG CTATCCTGCT TCCTATAATT TGGTTTATCA
CATTTCTCCA TCTGCAACTT TATCATGTGG AGGTTTTGGT TTCTGGACTA ATGAACATTT TTATTTTAGG GTTATGCATT
GATTGAATAC GAGCGTGCTG AAGAAGCTCG AAATGCAATA GAGAATTTGA ATGGATCCGA GCTTCTTACC CAATCCATTT
ATGTTGACTG GGCCTTCAGC AGTGGACCTA TTAATGAGTC AGTCAGAAGA AAGAATGCTA GGTATATTAT ACATGTTTAA
TGATATAATC TTGACAGAAT TTTTGTTGTT TTGCAACATT AAAAAAAGGT CCCTTTTGTA TGCAGTGCTG GTTTTAGTGT
CACTTTGTTT GGTTTGGTAT TTCCCAATGT GAAATTTATT TCAGCCAATG TGATATCATT TCCTAAAATT TTCTAAAGAA
TATGTTCTTT GTTTCTAAGG TTAAACAGAA ATGAAAGTGG ATATTATATA TGTTTCTCCT TGGCTAAAGG ATAGAAAAAA
AATGAAAGCA TGGTATATTT TCTTGGACGG TGGATAAGTG TTACACAATT TGTTCCAAAT TTCAACTTTT TTACTACAAT
ATGAAGAAAA CTTCCCCTTT TTAGTTGTGT TAAGCAGATG CTAACGCTGT GTTTCTTCCC CTTGTGTGAA CACCCTGTTG
TATACTAGAA TTGTTTTTAA AAGCATGGGT AAGAACTACA GCGAGCTAGA ACATAGTCAT GTGCTTAAGG TTTTCTGGAA
TGGTATTCTA AATTTTTTCA GTGTCAAAGA ATGATTTTAA CTTTATCATT TCGCAGAGCA CCTCGTGAAC GGCGCTCCAG
GAGCCCCCGG AGGAGATATT GACATGTGTA TTCAGTAAAT GTTTGTGTTG ATGTGTGTGG ACCGTAAATT AGCAGCTTGG
TTTATTGCTA TAGCTGTGGA GGATTTTTCT GATAGTTGTG CTTCCGTCAG GCAAAATACA TATTTGATGC TGGCGATTCT
CATCGGATGA TTGGTTTAAA CTTTTAGCTA GTTTATTAAG GTGTATGCTG TTTAACACAA TTGTTTCATT ATAGTAACGT
GTTTTGGATA TGCTTTTTCT TACATGTAAC GTTGTTCTGT TGAGGAACGT AGGGTCTCTT TTCGTTTGCA GCTTGTTTCT
GCTACATGTT AAAGTTTGTG TCGGAGCCTC TTTTTTCCTT TTCTTTTTTG GTTTTGGCTA CAGATCTCTT TTTTTTTTCA
ATTTATGGAT GTTTTTCTCA TATCTTTTTA TTTACCTGTC CGTGCATTTA AATGAGTATT GGTATTTGTT ACGTGTAAAG
GCTTAATAAA GTTAAAAGAG TTATGGAACA CCTATATTTG GGTTTGGTGG ATGTTTGTCG TTTAGCTATA AAACCCGCGT
GTGATGCACA CTTCTTAATA CCAGTCAAAT AAATGGCTTG CTTCGTGCGC ATGCATGCTA AATATTAACA CGGTGAAAAG
GTTGCCAATT 

>Vigan.10G228400.01
CCTAGATAAA CCCCAAAAGG ATTTTACCAT TGCAAGCAAC AAAATACACA TAAAAGGGTT CTCTCTCTTC ACTCGCAGAA
CGTGCTCCAA CTCATATCGA ACTCAATTTT ACTGTGTCGA GAAAGAAGCA GAGGCGGAAA TGCAAGGTGG CGCAGCCGAC
GGAGAAGCCT TGGATTTCGA GCCCGAGGAC GATGACTTGA TGGACGAGGA CGGCGCTCCC GACGCCGACG CTTCTCCGCC
TCACCCTAAG CTTAAATCAG CCATCACCGC CGCAGCTACT TCCTCTCTCA CCGCTCCCAA GAAGACCAAG GGTCGCGGTT
TCCGTCAGGA CACCGATGCC AACCGCAACA CTCGACTCTC CGGCTCCGAC TTCGACTCCC TCACCACCGA GGGTGGCCCT
GGACCACAGA GATCCATTGA AGGATGGATC ATTCTGGTGA CCGGCGTGCA CGAGGAAGCG CAAGAGGATG ATTTGCAAAA
CGCCTTTGGT GAATACGGAG AGATTAAGAA CCTGCATTTG AATCTCAATC GCCGCACTGG TTTTGTCAAA GGTTATGCAT
TGATTGAATA CGAGCGTGCT GAAGAAGCTC GAAATGCAAT AGAGAATTTG AATGGATCCG AGCTTCTTAC CCAATCCATT
TATGTTGACT GGGCCTTCAG CAGTGGACCT ATTAATGAGT CAGTCAGAAG AAAGAATGCT AGAGCACCTC GTGAACGGCG
CTCCAGGAGC CCCCGGAGGA GATATTGACA TGTGTATTCA GTAAATGTTT GTGTTGATGT GTGTGGACCG TAAATTAGCA
GCTTGGTTTA TTGCTATAGC TGTGGAGGAT TTTTCTGATA GTTGTGCTTC CGTCAGGCAA AATACATATT TGATGCTGGC
GATTCTCATC GGATGATTGG TTTAAACTTT TAGCTAGTTT ATTAAGGTGT ATGCTGTTTA ACACAATTGT TTCATTATAG
TAACGTGTTT TGGATATGCT TTTTCTTACA TGTAACGTTG TTCTGTTGAG GAACGTAGGG TCTCTTTTCG TTTGCAGCTT
GTTTCTGCTA CATGTTAAAG TTTGTGTCGG AGCCTCTTTT TTCCTTTTCT TTTTTGGTTT TGGCTACAGA TCTCTTTTTT
TTTTCAATTT ATGGATGTTT TTCTCATATC TTTTTATTTA CCTGTCCGTG CATTTAAATG AGTATTGGTA TTTGTTACGT
GTAAAGGCTT AATAAAGTTA AAAGAGTTAT GGAACACCTA TATTTGGGTT TGGTGGATGT TTGTCGTTTA GCTATAAAAC
CCGCGTGTGA TGCACACTTC TTAATACCAG TCAAATAAAT GGCTTGCTTC GTGCGCATGC ATGCTAAATA TTAACACGGT
GAAAAGGTTG CCAATT

>Vigan.10G228400.01
ATGCAAGGTG GCGCAGCCGA CGGAGAAGCC TTGGATTTCG AGCCCGAGGA CGATGACTTG ATGGACGAGG ACGGCGCTCC
CGACGCCGAC GCTTCTCCGC CTCACCCTAA GCTTAAATCA GCCATCACCG CCGCAGCTAC TTCCTCTCTC ACCGCTCCCA
AGAAGACCAA GGGTCGCGGT TTCCGTCAGG ACACCGATGC CAACCGCAAC ACTCGACTCT CCGGCTCCGA CTTCGACTCC
CTCACCACCG AGGGTGGCCC TGGACCACAG AGATCCATTG AAGGATGGAT CATTCTGGTG ACCGGCGTGC ACGAGGAAGC
GCAAGAGGAT GATTTGCAAA ACGCCTTTGG TGAATACGGA GAGATTAAGA ACCTGCATTT GAATCTCAAT CGCCGCACTG
GTTTTGTCAA AGGTTATGCA TTGATTGAAT ACGAGCGTGC TGAAGAAGCT CGAAATGCAA TAGAGAATTT GAATGGATCC
GAGCTTCTTA CCCAATCCAT TTATGTTGAC TGGGCCTTCA GCAGTGGACC TATTAATGAG TCAGTCAGAA GAAAGAATGC
TAGAGCACCT CGTGAACGGC GCTCCAGGAG CCCCCGGAGG AGATATTGA

>Vigan.10G228400.01
MQGGAADGEA LDFEPEDDDL MDEDGAPDAD ASPPHPKLKS AITAAATSSL TAPKKTKGRG FRQDTDANRN TRLSGSDFDS
LTTEGGPGPQ RSIEGWIILV TGVHEEAQED DLQNAFGEYG EIKNLHLNLN RRTGFVKGYA LIEYERAEEA RNAIENLNGS
ELLTQSIYVD WAFSSGPINE SVRRKNARAP RERRSRSPRR RY*