GBrowse Details

Vigan.10G211100.01

Basic Information:
Name: Vigan.10G211100.01
Multiple alignment
Variant Information
Position: Chr10:26113852..26119294 (- strand)
Length: 5443
Functional Information:
Description: Similar to Uncharacterized protein. [I1LGI7, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: isoprenoid biosynthetic process (GO:0008299)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421)
InterPro: Hydroxymethylglutaryl-coenzyme A synthase, active site (IPR000590)
Hydroxymethylglutaryl-CoA synthase, eukaryotic (IPR010122)
Hydroxymethylglutaryl-coenzyme A synthase, N-terminal (IPR013528)
Hydroxymethylglutaryl-coenzyme A synthase C-terminal (IPR013746)
Thiolase-like, subgroup (IPR016038)
Thiolase-like (IPR016039)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.41,1.99,98.43,14.67,55.37,38.14,54.01,28.82
Arabidopsis thaliana homolog: AT4G11820.2
Automatic updates:
Name: NM_001360247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative hydroxymethylglutaryl-CoA synthase (LOC100782595), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26113852..26114211 (- strand)
Length: 360
Type: three_prime_UTR
Position: Chr10:26114212..26114439 (- strand)
Length: 228
Type: CDS
Position: Chr10:26115100..26115249 (- strand)
Length: 150
Type: CDS
Position: Chr10:26115338..26115478 (- strand)
Length: 141
Type: CDS
Position: Chr10:26115651..26115738 (- strand)
Length: 88
Type: CDS
Position: Chr10:26115822..26115877 (- strand)
Length: 56
Type: CDS
Position: Chr10:26116061..26116136 (- strand)
Length: 76
Type: CDS
Position: Chr10:26116574..26116647 (- strand)
Length: 74
Type: CDS
Position: Chr10:26116874..26117032 (- strand)
Length: 159
Type: CDS
Position: Chr10:26117219..26117362 (- strand)
Length: 144
Type: CDS
Position: Chr10:26117666..26117798 (- strand)
Length: 133
Type: CDS
Position: Chr10:26118205..26118311 (- strand)
Length: 107
Type: CDS
Position: Chr10:26118952..26119014 (- strand)
Length: 63
Type: CDS
Position: Chr10:26119015..26119294 (- strand)
Length: 280
Type: five_prime_UTR

>Vigan.10G211100.01 class=Sequence position=Chr10:26113852..26119294 (- strand)
ACGCAGTATG CGTTTATTCA CTGGGAGATG CATGAAAGAG GGGACCCTTG GGTACACCTC ACCGCACCAG ATCATTTGGG
GTTGGTGGCT GTTTCCCTAA CGAATTTTCT TTATATATAT ATATATGCTA AGTTTCCAAC ACTTCCCATG TGAGTGAGTC
ACTGAACAAC TCACTACTTC CTTTCTCTCT CTTTCTTTGC GATTTTGTGT GTACGGTTCT ATTCGATCAA GAGAGCATTC
ATTTTTTTGA TTGTTGGCAT TTGGAAGCGG TGAGCAGAAA ATGGCAAAGA ACGTCGGAAT TCTCGCCATT GACATCTACT
TTCCTCCAGC ATGCGTTCAG CAGGTCACTC CACCAACTTT CATTTTCTCT CTGTTTCTTT TTGCTTTCTT CGTTTCACTT
TGCTTCTTCG TTTAACGTTT TCAAAAACAA CCATGGAAGC TGTTCGATAT GTCACGGGAA TTTCGTTTTC CGTCTTGTGT
TGCTGTCACT CGCTTAGTTG GAGATTTTGG AAGAATAAAA TTGTCTCTAG ATGCTCCAGC CAACTGTAAA ATTAAATAAT
AAGCGTGTGG AGTTTGGGAG TGGGATATCT TTTCAGCATG TACCTTATTT GAGTCACCTG GGGCTGGATC GCATCGATAT
CGTTTTCTTA GGAGCGCATA AAATCGATTT CCCAATCATT TTTTGTTGAA AGTGATGATG TAAGGTCTGA GATTTGTTTT
CCATTTTCAC TTTTTGTTAG ATTATAGTTA TCGTGTGAAG GGAACTGGCC CGAAATCAAT AGTGGGGAAA AAGCTGGACG
AAATTGATTA GCCCGTGATT CTTTTTCTTT AAAAAACTAT ACCGTATTCT CAATGCTTCC GAAGCAATGC ATGTCGAAAT
TTTTTATTTT TTTACTGTGT TTATTATCCC ACTTTATGAA ATTGAGGTTT CCTAGACTTT TTTTATTTCG AGATTTTTAT
TTTCTTCACA TAACCACGTG TAGGAAGCAT TGGAGACTCA CGATGGTGCC AGCAAAGGGA AGTACACCAT TGGGCTTGGC
CAAGATTGCA TGTCGTTCTG TACCGAAGTG GAAGATGTCA TCTCAATGAG GTTTCCACTC TGATTTTGAT AGTCTCTGTT
TTTTGTTTGT GAGAGTCTTA TGATTTGCAT TGTTTTTGGA GCTGTCGTTG CTTGTAGTTA GTTTCCCTGT TTCTGGGCTG
TCCTTGCCAT TTATTGACTA GGATATCATA ATATGTCATA TTGTGGAAAT GCTTAAGTAA GTTTTACTAC TTACAAGCTT
TACCTAATGG TTTGGTGGAT CCTTTTTGGA GAGCATATAA GTTGGTGATC TGGTTAATAC CACCCATGAT GAAGTTTTAG
CTCTGTTAAA ATTTTCCAGG ATACGGTGAA ATGAACACAT TTAATGTTGA ATAGGAGTAT AGGACTCCAG TGCTGAAGGC
TTACAATTAA TAATATTCCT AATCCCACTT CTTCAAAACT AATATCGCAT CTTCAGTTTG ACAGTGGTTA CTTCTCTTCT
TGAGAAGTAT GGAATTGATG CTAAACAAAT TGGTCGCCTC GAAGTTGGAA GTGAGACTGT GATAGACAAA AGCAAATCCA
TCAAAACATT CCTTATGCAG ATCTTTGAGG TATACTTTTC GTGTCTAACC TCATGGATCT TGGTTATGTG ATTCTCCCTG
TCACAGTAGA TTGTCATGTT CATCTTCTAA TCGTAGTTTA AATGCCTATT TACTTGCTGA CAACTGTGCG TTTTTCATCC
TAATAGTTAC CAGTTACCAT CTTCATGATG TTTTACTGTC TTATTGGAAA ATTACATTGT TAATTATCTG ATTGGATTTT
TTCTGTCATA TTATAATTTT CTAGATCTTT CATCCATTTC TCCTTTACTT TCCGCTATAA ATGAAAGTTC TTTATTTGTT
TGAAATGAAC AGAAATGCGG AAATACTGAC ATTGAGGGTG TTGATTCAAC TAATGCATGC TATGGGGGAA CTGCCGCCCT
GTTTAACTGT GTCAATTGGG TGGAGAGCAA CTCATGGGAT GGACGCTATG GACTTGTTGT CTGCACTGAC AGTGCTGTAA
GATAATTTTC TAATCATTCA CATTGCATTT GCACTAATGC AGAATACAAA CTTGGTTTGA CTCTCTTATT TTCCAACAGA
ACAATACAAG TTCCTTATTC AAAGTCCTGA GTTCCTCATT CAAAGTCTTA AGATTATATG ATAGATTAAT TTCAAGCTTG
TTTCTAATGT TTCCCTTCTC AGGTCTATGC TGAAGGACCT GCTCGACCTA CTGGAGGAGC TGCTGCTATT GCCATGCTAA
TTGGTCCTGA TGCTCCCATT TCTTTTGAAA GCAAATATAG AGGAAGTCAT ATGTCTCATG TTTATGATTT TTACAAGCCG
AATCTTGCTA GTGAATATCC AGTGAGTTTT TTACTCCCTT TGACTTTTGG GATCATATGC TTTGAAGAAC AACTTGCAAT
TATTTTCCAG ACGGCTAAAA TTATCCTTGC AAGTTGCTCT TTATTTTTGT TTTGATATGC CATGAAGGAT AGCATTTTGA
TTGTTCGTGT CCATTTTACT TTCACCCATA ACCCACTGAT GTTTCAGGAT GCCAACTGCT ATATACTCAC ATTTTTTTTT
GCTGTAGGTT GTTGATGGAA AGCTGTCACA AACTTGTTAC CTCATGGCTC TTGATTCTTG CTACAAGAGT TTCTGTCACA
AGTAAGTCTT TATTGTTAAT TTTAGTTCTT ATGAATTTGT TTTATCAATA TAAATATAAA ATTGGATCCT TTCAAATTGA
TTGGAAGTGT CAGCTCAAAA GAACCCAATA AAAATCTGAG TTTACTCCAC ATTCTGCTGG CTTGATGCAA ATTGGGTCTG
ACCTGCCATG TCCTGTTGAC AATTTTTTGT GAACTAAATT ACATTTTCAA AATCTTAAAT GATGTAATAA CGAGATTTAT
GCATAACACC GAGGAAAAAA GATTCTTAAA AAACATTCTA TGCTAACAGC GTATCCTTAT TATTGATTAA AATTTATTTT
CCTAAAATCA CAAGTGAGAC TCATTAAATA GGAATATGTG TATTAACACT CATTGTGTTC AAAACATCAA TAGTATAGTA
ACTGATCACT GAAGTACCTA CCTTTATCTA CTTTGCAGGT ATGAGAAATT CGAGGGAAAA CAATTTTCTC TTTCTGATGC
GGCATACTTT GTTTTTCACT CACCTTACAA CAAGGTAGGT TTTCTTCTGA AGCATCTATT GTTTAATCTC CCAACTCCAC
ACGATGCATA ATAATGCTCC CTATAACATG TTCTATGTAG TTCGGTATCT CCGATGTATC TTCTTAATTA ATATGTAATT
TGTTTTTCTT CTGTATATTT ATTTGTATAC TTCCCCTAAT TCCACTTGCT TTTGCAGCTA GTACAGAAGA GTTTTGCACG
GCTGTATTTC AATGACTTTT TGAGGAATGC CAGGTCCTCT TTATTTCTCC ATCATCTAGA ATATTTTTTA TCAGTTAATG
TTGGTGTGGA TGTTCTAAAA TTGGTTATGA TTGCAGCTCT GTGGATGAGA ATGCCAAAGA AAAGCTGGGA CCTTTTTCAA
ATTTATCTGG TGATGAGAGT TACCAAAGTC GGGATCTTGA AAAGGTCTAA GAACCTACCC CCTCGAAATC CATAATCTGT
TGTTTCTCTT AGATATTTGA TTAGTTTTCC TTTTCGACCT TGAGTTGTCA AACTAGCTGT AGGTTCACAT AGAATTCTAT
TGAAAACGAA CAGCATTTAA ACTTTTTTTC TGATGTGCAA TATTATTGAT TTGCAGGCAT CTCAGCAAGC TGCGAAGCCT
CTGTATGACG AGAAGGTACA GCCAACAACC TTGATTCCAA AGCAAGTCGG CAACATGTAC ACTGCGTCAC TCTATGCAGC
ATTTGCATCC CTTATTCACA ACAAACATAG CACATTGGTG AATGTCCTGA CCACTACAGC AAATAAAGTT CGTCGCAAAA
TTGTTTTGAG CTTTCTAATG AATATTTTCA TTTTTCAATT TTCAGGCTGG TAAGAGGGTG ATATTATTCT CATACGGAAG
TGGCTTAACT TCCACAATAT TTTCTTTGCA ATTGCGAGAT ATTCAACATC CATTTAGCTT GTCAAACATC GCTAAAGTGA
TGGATGTCGA TGGAAAATTG AAGTCAAGAC ACGAGGTAAT GATCTACAAA AGTCTAATAA AATATGGACG TATTACTCAT
TTGCTCTTCT GGTTTAATAT TGAATGGAAG ATGGGCATGC CAAAAACATA AGAATGTGTT TGTTGTAACA AACATATGAT
TGACAACTGA CGAATTTTTC AGCGGACAGA GATACTGTTT GGCCTCCTAT CAAGAGGTCT TGTTAGAATG AATAGAAATA
GTGCAGCAGA TCATTAGACC AGCGATGAGC TGTTACTTTT GATTACTATC CAAATAGAAT GACGGCTGGA CATTTAAGAG
AATAATCGGT AAACAGGAGG GGAACAAATA GCGGCGAAGA CGAGAGTAGA ACCAGTTTTG GAATTGTTTG GGGAATTATT
TTTAAAGGCT CTTTGGGAAA AATTATGCCC TTGAATTTAA CTGAATCAAG CCTGCATATA TAGGTTCTAA GAAATTTTAT
TTTTCCTATT TCCTTACTGA GATTTTAGAA ACTTCAAAAA TTGATATTTC GTTCTCTAAA GTATCTTAGA ACTTGAAGAT
TAATACCATA GAAGTGAACC TATGGTGAGA AGCCGATCAG TCCCTTTGTT AATATTATTG TTGTAGTGTT TGTTAAGATG
GTGAAAGCAA AATCGTGTGT TTAATAGTCT TTTGATGAGT GTTTTTCTGA TGCAGTTTCC ACCGGAGAAG TTTGTTGAAA
CCCTGAAGGT AATGGAGCAT AGGTATGGTG CTAAGGAATT TGTGACAAGC AAGGACAGTA GCCTTTTATC TCCGGGCACA
TTCTATCTCA CTGAAGTTGA CTCCATGTAT CGGAGATTTT ATTCAGAGAA AACTAAAGAA AGCCTTTCTA CTCCCGCTGT
GAACGGTGTG ATTGCTAATG GTGTGATCGC TAATGGCCAC TAATGTTGAA ATTGTACAAT GATAGCCAAC TTTGCCTACA
ATGAACTGGT GAGTGTTCCT AGGTAATCAT TTATGGGTGG TGAGTGTTTT TGGTTCAAAA TTTTATGCTA CTCTGTATTC
ACTCAAGTCT AAATTTTATT TTTTTTGGTA TTTTTCTTTT TTCATTTTAT GAATGTGAAT CAGTTGAATA AGAATAAGTT
GTAATAACTT TGTTTATTTT ATTAGGTAAG ATGAATTATC ATTTAAAAAT CAAATTTTTA TAGATATTTG TTCCCTCCTT
CCATGTGCTT AAAAGCCATG TGACTTCAGT CACCTTTTCT GTCTTTTTTT TGCCATAAAT TTATCTTGTA TGGCTATATC
ATA

>Vigan.10G211100.01
ACGCAGTATG CGTTTATTCA CTGGGAGATG CATGAAAGAG GGGACCCTTG GGTACACCTC ACCGCACCAG ATCATTTGGG
GTTGGTGGCT GTTTCCCTAA CGAATTTTCT TTATATATAT ATATATGCTA AGTTTCCAAC ACTTCCCATG TGAGTGAGTC
ACTGAACAAC TCACTACTTC CTTTCTCTCT CTTTCTTTGC GATTTTGTGT GTACGGTTCT ATTCGATCAA GAGAGCATTC
ATTTTTTTGA TTGTTGGCAT TTGGAAGCGG TGAGCAGAAA ATGGCAAAGA ACGTCGGAAT TCTCGCCATT GACATCTACT
TTCCTCCAGC ATGCGTTCAG CAGGAAGCAT TGGAGACTCA CGATGGTGCC AGCAAAGGGA AGTACACCAT TGGGCTTGGC
CAAGATTGCA TGTCGTTCTG TACCGAAGTG GAAGATGTCA TCTCAATGAG TTTGACAGTG GTTACTTCTC TTCTTGAGAA
GTATGGAATT GATGCTAAAC AAATTGGTCG CCTCGAAGTT GGAAGTGAGA CTGTGATAGA CAAAAGCAAA TCCATCAAAA
CATTCCTTAT GCAGATCTTT GAGAAATGCG GAAATACTGA CATTGAGGGT GTTGATTCAA CTAATGCATG CTATGGGGGA
ACTGCCGCCC TGTTTAACTG TGTCAATTGG GTGGAGAGCA ACTCATGGGA TGGACGCTAT GGACTTGTTG TCTGCACTGA
CAGTGCTGTC TATGCTGAAG GACCTGCTCG ACCTACTGGA GGAGCTGCTG CTATTGCCAT GCTAATTGGT CCTGATGCTC
CCATTTCTTT TGAAAGCAAA TATAGAGGAA GTCATATGTC TCATGTTTAT GATTTTTACA AGCCGAATCT TGCTAGTGAA
TATCCAGTTG TTGATGGAAA GCTGTCACAA ACTTGTTACC TCATGGCTCT TGATTCTTGC TACAAGAGTT TCTGTCACAA
GTATGAGAAA TTCGAGGGAA AACAATTTTC TCTTTCTGAT GCGGCATACT TTGTTTTTCA CTCACCTTAC AACAAGCTAG
TACAGAAGAG TTTTGCACGG CTGTATTTCA ATGACTTTTT GAGGAATGCC AGCTCTGTGG ATGAGAATGC CAAAGAAAAG
CTGGGACCTT TTTCAAATTT ATCTGGTGAT GAGAGTTACC AAAGTCGGGA TCTTGAAAAG GCATCTCAGC AAGCTGCGAA
GCCTCTGTAT GACGAGAAGG TACAGCCAAC AACCTTGATT CCAAAGCAAG TCGGCAACAT GTACACTGCG TCACTCTATG
CAGCATTTGC ATCCCTTATT CACAACAAAC ATAGCACATT GGCTGGTAAG AGGGTGATAT TATTCTCATA CGGAAGTGGC
TTAACTTCCA CAATATTTTC TTTGCAATTG CGAGATATTC AACATCCATT TAGCTTGTCA AACATCGCTA AAGTGATGGA
TGTCGATGGA AAATTGAAGT CAAGACACGA GTTTCCACCG GAGAAGTTTG TTGAAACCCT GAAGGTAATG GAGCATAGGT
ATGGTGCTAA GGAATTTGTG ACAAGCAAGG ACAGTAGCCT TTTATCTCCG GGCACATTCT ATCTCACTGA AGTTGACTCC
ATGTATCGGA GATTTTATTC AGAGAAAACT AAAGAAAGCC TTTCTACTCC CGCTGTGAAC GGTGTGATTG CTAATGGTGT
GATCGCTAAT GGCCACTAAT GTTGAAATTG TACAATGATA GCCAACTTTG CCTACAATGA ACTGGTGAGT GTTCCTAGGT
AATCATTTAT GGGTGGTGAG TGTTTTTGGT TCAAAATTTT ATGCTACTCT GTATTCACTC AAGTCTAAAT TTTATTTTTT
TTGGTATTTT TCTTTTTTCA TTTTATGAAT GTGAATCAGT TGAATAAGAA TAAGTTGTAA TAACTTTGTT TATTTTATTA
GGTAAGATGA ATTATCATTT AAAAATCAAA TTTTTATAGA TATTTGTTCC CTCCTTCCAT GTGCTTAAAA GCCATGTGAC
TTCAGTCACC TTTTCTGTCT TTTTTTTGCC ATAAATTTAT CTTGTATGGC TATATCATA

>Vigan.10G211100.01
ATGGCAAAGA ACGTCGGAAT TCTCGCCATT GACATCTACT TTCCTCCAGC ATGCGTTCAG CAGGAAGCAT TGGAGACTCA
CGATGGTGCC AGCAAAGGGA AGTACACCAT TGGGCTTGGC CAAGATTGCA TGTCGTTCTG TACCGAAGTG GAAGATGTCA
TCTCAATGAG TTTGACAGTG GTTACTTCTC TTCTTGAGAA GTATGGAATT GATGCTAAAC AAATTGGTCG CCTCGAAGTT
GGAAGTGAGA CTGTGATAGA CAAAAGCAAA TCCATCAAAA CATTCCTTAT GCAGATCTTT GAGAAATGCG GAAATACTGA
CATTGAGGGT GTTGATTCAA CTAATGCATG CTATGGGGGA ACTGCCGCCC TGTTTAACTG TGTCAATTGG GTGGAGAGCA
ACTCATGGGA TGGACGCTAT GGACTTGTTG TCTGCACTGA CAGTGCTGTC TATGCTGAAG GACCTGCTCG ACCTACTGGA
GGAGCTGCTG CTATTGCCAT GCTAATTGGT CCTGATGCTC CCATTTCTTT TGAAAGCAAA TATAGAGGAA GTCATATGTC
TCATGTTTAT GATTTTTACA AGCCGAATCT TGCTAGTGAA TATCCAGTTG TTGATGGAAA GCTGTCACAA ACTTGTTACC
TCATGGCTCT TGATTCTTGC TACAAGAGTT TCTGTCACAA GTATGAGAAA TTCGAGGGAA AACAATTTTC TCTTTCTGAT
GCGGCATACT TTGTTTTTCA CTCACCTTAC AACAAGCTAG TACAGAAGAG TTTTGCACGG CTGTATTTCA ATGACTTTTT
GAGGAATGCC AGCTCTGTGG ATGAGAATGC CAAAGAAAAG CTGGGACCTT TTTCAAATTT ATCTGGTGAT GAGAGTTACC
AAAGTCGGGA TCTTGAAAAG GCATCTCAGC AAGCTGCGAA GCCTCTGTAT GACGAGAAGG TACAGCCAAC AACCTTGATT
CCAAAGCAAG TCGGCAACAT GTACACTGCG TCACTCTATG CAGCATTTGC ATCCCTTATT CACAACAAAC ATAGCACATT
GGCTGGTAAG AGGGTGATAT TATTCTCATA CGGAAGTGGC TTAACTTCCA CAATATTTTC TTTGCAATTG CGAGATATTC
AACATCCATT TAGCTTGTCA AACATCGCTA AAGTGATGGA TGTCGATGGA AAATTGAAGT CAAGACACGA GTTTCCACCG
GAGAAGTTTG TTGAAACCCT GAAGGTAATG GAGCATAGGT ATGGTGCTAA GGAATTTGTG ACAAGCAAGG ACAGTAGCCT
TTTATCTCCG GGCACATTCT ATCTCACTGA AGTTGACTCC ATGTATCGGA GATTTTATTC AGAGAAAACT AAAGAAAGCC
TTTCTACTCC CGCTGTGAAC GGTGTGATTG CTAATGGTGT GATCGCTAAT GGCCACTAA

>Vigan.10G211100.01
MAKNVGILAI DIYFPPACVQ QEALETHDGA SKGKYTIGLG QDCMSFCTEV EDVISMSLTV VTSLLEKYGI DAKQIGRLEV
GSETVIDKSK SIKTFLMQIF EKCGNTDIEG VDSTNACYGG TAALFNCVNW VESNSWDGRY GLVVCTDSAV YAEGPARPTG
GAAAIAMLIG PDAPISFESK YRGSHMSHVY DFYKPNLASE YPVVDGKLSQ TCYLMALDSC YKSFCHKYEK FEGKQFSLSD
AAYFVFHSPY NKLVQKSFAR LYFNDFLRNA SSVDENAKEK LGPFSNLSGD ESYQSRDLEK ASQQAAKPLY DEKVQPTTLI
PKQVGNMYTA SLYAAFASLI HNKHSTLAGK RVILFSYGSG LTSTIFSLQL RDIQHPFSLS NIAKVMDVDG KLKSRHEFPP
EKFVETLKVM EHRYGAKEFV TSKDSSLLSP GTFYLTEVDS MYRRFYSEKT KESLSTPAVN GVIANGVIAN GH*