GBrowse Details

Vigan.10G210900.01

Basic Information:
Name: Vigan.10G210900.01
Multiple alignment
Variant Information
Position: Chr10:26100738..26106576 (+ strand)
Length: 5839
Functional Information:
Description: Similar to Uncharacterized protein. [I1JA22, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Homeobox domain (IPR001356)
ELK (IPR005539)
KNOX1 (IPR005540)
KNOX2 (IPR005541)
Homeobox KN domain (IPR008422)
Homeodomain-like (IPR009057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.17,5.49,19.44,41.26,2.33,19.49,14.87,17.46
Arabidopsis thaliana homolog: AT1G62990.1
Automatic updates:
Name: NM_001255349 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max homeobox protein knotted-1-like 7-like (LOC100782179), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:26100738..26101345 (+ strand)
Length: 608
Type: five_prime_UTR
Position: Chr10:26101346..26101618 (+ strand)
Length: 273
Type: CDS
Position: Chr10:26101708..26101828 (+ strand)
Length: 121
Type: CDS
Position: Chr10:26105371..26105561 (+ strand)
Length: 191
Type: CDS
Position: Chr10:26105668..26105799 (+ strand)
Length: 132
Type: CDS
Position: Chr10:26106058..26106198 (+ strand)
Length: 141
Type: CDS
Position: Chr10:26106199..26106576 (+ strand)
Length: 378
Type: three_prime_UTR

>Vigan.10G210900.01 class=Sequence position=Chr10:26100738..26106576 (+ strand)
GCCTAAAAAT CCATTACTGT TCCAGATAAA AAATAAAAAA GAATAAAAAA AAATAAATAA AAGAAGAGGA AAAAGAAATG
AAGGTGTCAG GTGACAGAAG CAGCTTTATC TTCTTTTTCT GACCTCGCTT CCATCCCCTT TCATAGTAAT GATTCCGCAG
CTTACTCTTT TCTCTGTCTC TCTTCCTCTT TCTATTCTCT CTCTCTCTTA AATAAAGAAA ACAAAACTTC AATCTCTCTC
ACACAAACAC ACAACACAAG GCACAGCGCA GAAATCAACC GTGTTTAATG CCTTTGCTTC ACCCTCTTTC TCTGTGTATG
TAAAATCTTT GTTTTTATCA GAGGTCCTGC AGAAAGTTGT GTCTCAGATC CCTATATACA CCGAAAACGA TACAACTCTG
TGCACTCTGT ACTCTGCTTC TTTCTCTCTC TCTATCTCTG AAAATCATCA TTTACAATTT TACACACAAC CTATTACCGA
ATAGGGTGGT CCTCAACCTC GCTCTTTTTT CTTTTTTTTC CCTCTGCCTT CTGCCTGCCC TATATTATTC TGCTCTGCCT
TTATCAATCC ATCCATCGCG CTTCTCTTTC TCTCTAAAAA TTGAGAAAAT GCAAGAACCG AGACTGGGAA TGATGGGCGG
GTTAAGCGGC GAGGTCTCCG GCGATCACCA CCGTCAACTG AAGGCGGAGA TAGCCACACA TCCGCTGTAC GAGCAGCTCC
TGGCTGCACA CGTCGCATGC CTCCGTGTGG CCACTCCCAT CGACCAACTT CCTCTCATCG ATGCTCAGCT ATCTCACTCT
CACCATCTTC TACGATCTTA TGTCTCTCAC CATACCCACT CTCTCTCCCC CAATGACCGC CAAGAACTCG ACAACTTCCT
GGTAAATAAA CCGAACAAAC AATATTGTTA TTTTCTTTCT CACATATACA CAATTTCATG GATCCCTCTT GTTTGCTGTT
ACCACCGCAG GCACAGTATT TGATAGTTTT GTGTACTTTC AAAGAACAAC TTCAGCAACA TGTCAGAGTC CACGCCGTTG
AGGCTGTCAT GGCCTGCCGC GATATCGAAA ATACCTTACA AGCTCTCACA GGTATTTATT TACCAGTAAA CTCTATTTTT
TTTTATCTCC TCTTACTCCA TTTTTTTATC TACCATTTCT TATAGAAGAA AATCATCATC CATATTGATA AAAAAACGAC
GTATGATGTT GCCATTTTTT GTGAGGAGTT AATTAATGTT AATTTTCTGA GCGTGTGAAA GCATTTTTTG TTTCTTGTGA
TTTACGCGAT TTAGCAGAAA GGAAAGAAGG TACATAATAA TGGTATACAT ATTTTTTTCT TTTGTAAAAG TTTCTGTTGT
CGAGTTAATT AGACTAAGGA ATGGAGTGGT AGGGTCTAGA AATGTTATCT GGTGGAGTGT ACACAAATGG CAATGAGAAG
AGTTAGTTAG TTTGGTGAGG AATGGTAGAC CCTCTTCTCC CACTATGTCA CTCACTGCCA ACAACCTATA ATGCCGTGAC
CCAATTATTT TCTTCCAGAA AGGATCTCCT ATATATATAT TTTTATCCCT ATAATGCAAC TTTCAGTAAG ATTTCTTACA
CCATCTTGTT TTACTATTTT ACTTGTATAT TTATATTTGT AAGTATTTGA TTAAATCAAG TATGGAAGTG GGGGATGGGA
AATGAGACAA ATTAATTAGC TTGTTTTAAA CATTGGAATG ATTTTAAACA TCTCCTGACA AAGTATTTAA TTGTAGGAGA
TGACAATGAT TTTAAACAGT AGAAATTAGA GATTTTGGAG CCTTCCTAGT TTGTTTTCCC TGCCATATAA AGATCCCACA
TGAGTTTCTT GTCAATCTGC ATCATGTTTC AGTACTGATA GTTCACACAT AATATATTTG CTGAGATGAA AGAAAATAGA
ATAGATAGGA TAGGAAGGGT AAAGAGAGAA GAATTCACAA GTTGATGTAC TAGAGAAAAA CATATATAGG ACTAAAAACA
TTAAGTTGAT TATCATTAAA AATATGTCGC CATCTTATGT ATAAGGGTTT GAGATAGGTG GAGAAAGGAT TTGAGAGAAT
AAAAAAGATG AAGAGTGTTA AATTATATAA AAATAATAGA CAAAATAAAA GGAAGGAAAA CATTTAAAGA AACGAGTGAG
AAAAATATCA AAACTCTTTC TTAAAAGGAT CCTATGTTAT TGAACATGCT TCCATGGAAC TGCATGCTGC GTTCTAATAA
CCAGCTGGCC TGTGTCTATA ACGCATAAGC AAACGCACCC GAAGCTGAAA ATTACATTCG AAGCTTTATA TCACAACATT
TACTCTTACA AATAATTCAA TACGAGTTTA GTCAATCAAT CATAGATCGA TAGAAAATTT AAAATACTTA ATATTAATTA
AAAATCGGAG TTTATGAATT GTAGTTATAC GACACTATAA AATATCTTCG ATTACAGTAT ATTATTTATT CAGTATAAAA
GCTTCTTTAT TTATATTTTT CGTACTATAA ATGTGTGTTA ATCTGAAGGT TGATGAAGGA TTAACCAAAG GGTTGATCTT
TATTTAATAT TTGATATTTG AACGTGTCTT TCTGTTTTTC CGGCCTTGTT ATTACAATCC ACCATTCAGT TAGTTGCATT
AACAGTGGGA ACTATTTAGG GTCTAGTTAT TATAATTAAA CACTAAGTTC TTATGGTTAA AATTAATTTT TACGTATTAA
CTTATGAATT AGTTAAATAA GAAACGTTAC TTTTTTTATT AATTTATAAA CAGTATTTTG AAAAAAAAAA TCTTGTTACT
TGTGATAGCT TTGGAACAAT ATATGTAGAG CTAATGTAAA TAATTAACCA ATTGAACATT TCATATAATA CATGCTTTAG
AAGACTGCTA AAATAAAGAA TTGAAATTTT TGTAGAAAAA TATTAGCAAT ATATTTAACA GTAGTTTTTA ATAACATTTT
CATTATATTA ATTTTTTTAA CTTGTATTCT TAGAACACTC CATTTGACAC TCTTTTATTG ATTATCCTTG AGACAATTTA
AATTGTTTTA TTAAATTTAT TGTTACTAAT ATACCAAATA CCATGATTTT AAAAAGCCTC TTTTAGTAGT GATTGTTGAA
TAGTTGTTTT GCTCTTGTAA TTTTTACATG TTAGGAATTG AATTTTACTC CAATTATATT ACATTAAGTC TTTATTTTTT
TTATGATTTT GTTTCTTTGG AAATATTTCA ATGGTTATGT ATGAATTAAT TGTACCAGGG TGTATCAGTG GTTAGTTTAG
TTGAGTTGGA AAAACTATCA CTTGAATTCA ATAGAGCGCA TTAAGTATTG CCAAGAGTAG GAGTGGGAAA AATTAGTTGG
ATTGAATTGA AATTTTCAGA TCCAGCAAAT TAGAAAAGCT AAGGGTCTAT AATAAAAAAA TTGTCAGTTT AGTTTTGAAC
ATTGAACTGC TACATTTGCT GAACTGATTT ATTTCATGAC AGTTCAAAAA TGAAAAAAAT AACAACATGA AAGTGTTGTT
GTATTTAGCT ATACAACATC AAAACACAAA ATATATAGAT AAGTTAGATT TCGTAAACCT GATAAGAGCT TACCTTATTT
GGAATTAGTA GTAACAAATT AGTAGCTTTG CAATATTTTG AATATTTTAT TTAAAACATG TTATTAGAAG CAATGAATTG
GTTCGAACAT AATTCAACTC AATTAGTGTA AAGATTAAGA ATAAGAAAAG TGTCGATTTG AAACTAAAAA TAGTAGTCTA
TAACGGACTG AAAAAAACTC AACTAAAAAT TACTTTTTCA GTGTAATTCA AGTATTACAC CTGTTAAAAG CTTTGCATAG
GTGGTAGATA CATGAAGGAT TTCTTTCAAT ATTAGAAAAC TATATGGAGA AATTTTCTGG TTTAAGGAGA TATGGTAGTA
GTAGATATGA GGAATTTTTA TGGTTATTTT GATATCCAAC TAACGTGCAG CTGATAATTA TGGATGATAT GACTGCACAT
ATGGCGTATT AAGTGGGATA AAGAAGAGAT ATTCAACTGT CCCTTTAGGA TATCTTCAAA GTATTACTCA CTTTAGGATA
AAATAATTAA CTTGAATTCG CCTGGTCAAT GTCATCCCTG AATTATGATT AAAAATAGAT GATTAGTCCA TTATTGATGT
TATCGGCAAC TAACTTTATT GCATGCTTTT ATGTATGATT AAGATGTGTC AAACATTTTG GCACTATTCA GACCCGTCAT
TGTTCCACTG ACAAACCAAA GGGGCCCTTC TATCTTCACT TCTCTCCCTC ATCTGCACTT TCAATTTCAA ATCACCAAGT
TGCCACCCAA AATTTATGCC ATGCATCTTC TGCTCTAGCA CATTAAATCC AGCCAAAACA AATTTCCTTT GTAAGACTAA
TTACTTCTTA AGTGTAATTT CTATGTAGAA GAAGATGATC CCAAGATGTC AGAGAAAAAT ATTTGGAGTA TTGAACAAGA
GTTTTATCAA CCATATACTA TGCTTTGACT ACCCTCTTTT CCATGTATTT AGCCATTACG TTGTGTGATG TGTGAAAATA
TATTTCTGAA GTTGTTTTTG TCGTTACATT CTCAAAATTT AGTCATATGG AATGCTGTTT AATCATATTT CAGGAGTGAG
TCTGGGAGAA GGAACTGGTG CAACAATGTC AGATGATGAA GATGAGTTAC AGATGGATTT TTCTTTGGAT CAATCCAGCG
CTGAAGGGCA TGACATGATG GGATTTGGTC CCTTACTTCC TACAGAATCT GAAAGGTCAC TGATGGAGAG AGTTCGTCAG
GAACTAAAGA TTGAGCTGAA GCAGGTCATT CTTGTACTCA ATATATATAC ATGCTACCTG TTCTTGCACT TTACATGTGG
TTTAATATTT TCAGTAAGTT TGAATCACCA ACCAGTTTTA CTTTCTGCAG GGTTTCAAGT CAAGAATTGA AGATGTCAGG
GAGGAAATAT TAAGGAAACG TAGAGCTGGG AAATTACCAG GTGACACAAC TTCTGTGTTA AAGAATTGGT GGCAGCAACA
TGCAAAGTGG CCTTATCCTA CTGTAAGTGA ACACCTTCTC ATCATGTTCC TTTCATCTTG CGTGTAATCA ATATTTTCAT
AATTTTGTGT TTCCTTGAAA TCAATTCTAG TATCAACTTA TGCATGCGTC CACAACGTTG TTTCTTTGCT AAGAAAGAGT
TCATATGTCA TACCCCAACA TTGCTAAGAT TCTGCTATTT GTGACATCTA TGATGTATCA TTGGCATGTT ATCAATGATA
CATTAATGAC CTCTGACTGA TTGATTTTGC TTTGTTTCAG GAAGATGACA AGGCAAAACT TGTGGAGGAG ACAGGGTTGC
AGCTGAAGCA AATTAATAAT TGGTTCATCA ATCAAAGGAA ACGCAACTGG CACAGCAATT CTCAATCGGT TACCTCTTTG
AAGTCGAAAC GCAAGAGGTA GACATATTTT GTCTCAACTA TGTGGCACAG CTAGCAACAC AACTTATATA AGGACTTACT
ATATATATAT ATATGCTTAT TTCTGATAGA GTCTAGTCTC CCTAAGGATT CCGATCAGAT GCACAAGATA GTAGATGGGT
TACTGTAATG TAAGATAGCT GAAAAAAAAA GGCTGCAAGT AAATTTGTGG AATTTAACGT ATGAAAACTT CTGTTTTAGG
TGTGGTTATG CCTCTCTTTT AACGATCTTT GTAAATTGTT TGCTACTTTT CTGACCGACG ACAGAGTTAT TACTGTCACT
ACACACATCA TTGGAAGATT TTCGCGGTTC TTTACAAATT ATATATGTTC TTTGATCCTA CATATTTGAT CTCTTATAC

>Vigan.10G210900.01
GCCTAAAAAT CCATTACTGT TCCAGATAAA AAATAAAAAA GAATAAAAAA AAATAAATAA AAGAAGAGGA AAAAGAAATG
AAGGTGTCAG GTGACAGAAG CAGCTTTATC TTCTTTTTCT GACCTCGCTT CCATCCCCTT TCATAGTAAT GATTCCGCAG
CTTACTCTTT TCTCTGTCTC TCTTCCTCTT TCTATTCTCT CTCTCTCTTA AATAAAGAAA ACAAAACTTC AATCTCTCTC
ACACAAACAC ACAACACAAG GCACAGCGCA GAAATCAACC GTGTTTAATG CCTTTGCTTC ACCCTCTTTC TCTGTGTATG
TAAAATCTTT GTTTTTATCA GAGGTCCTGC AGAAAGTTGT GTCTCAGATC CCTATATACA CCGAAAACGA TACAACTCTG
TGCACTCTGT ACTCTGCTTC TTTCTCTCTC TCTATCTCTG AAAATCATCA TTTACAATTT TACACACAAC CTATTACCGA
ATAGGGTGGT CCTCAACCTC GCTCTTTTTT CTTTTTTTTC CCTCTGCCTT CTGCCTGCCC TATATTATTC TGCTCTGCCT
TTATCAATCC ATCCATCGCG CTTCTCTTTC TCTCTAAAAA TTGAGAAAAT GCAAGAACCG AGACTGGGAA TGATGGGCGG
GTTAAGCGGC GAGGTCTCCG GCGATCACCA CCGTCAACTG AAGGCGGAGA TAGCCACACA TCCGCTGTAC GAGCAGCTCC
TGGCTGCACA CGTCGCATGC CTCCGTGTGG CCACTCCCAT CGACCAACTT CCTCTCATCG ATGCTCAGCT ATCTCACTCT
CACCATCTTC TACGATCTTA TGTCTCTCAC CATACCCACT CTCTCTCCCC CAATGACCGC CAAGAACTCG ACAACTTCCT
GGCACAGTAT TTGATAGTTT TGTGTACTTT CAAAGAACAA CTTCAGCAAC ATGTCAGAGT CCACGCCGTT GAGGCTGTCA
TGGCCTGCCG CGATATCGAA AATACCTTAC AAGCTCTCAC AGGAGTGAGT CTGGGAGAAG GAACTGGTGC AACAATGTCA
GATGATGAAG ATGAGTTACA GATGGATTTT TCTTTGGATC AATCCAGCGC TGAAGGGCAT GACATGATGG GATTTGGTCC
CTTACTTCCT ACAGAATCTG AAAGGTCACT GATGGAGAGA GTTCGTCAGG AACTAAAGAT TGAGCTGAAG CAGGGTTTCA
AGTCAAGAAT TGAAGATGTC AGGGAGGAAA TATTAAGGAA ACGTAGAGCT GGGAAATTAC CAGGTGACAC AACTTCTGTG
TTAAAGAATT GGTGGCAGCA ACATGCAAAG TGGCCTTATC CTACTGAAGA TGACAAGGCA AAACTTGTGG AGGAGACAGG
GTTGCAGCTG AAGCAAATTA ATAATTGGTT CATCAATCAA AGGAAACGCA ACTGGCACAG CAATTCTCAA TCGGTTACCT
CTTTGAAGTC GAAACGCAAG AGGTAGACAT ATTTTGTCTC AACTATGTGG CACAGCTAGC AACACAACTT ATATAAGGAC
TTACTATATA TATATATATG CTTATTTCTG ATAGAGTCTA GTCTCCCTAA GGATTCCGAT CAGATGCACA AGATAGTAGA
TGGGTTACTG TAATGTAAGA TAGCTGAAAA AAAAAGGCTG CAAGTAAATT TGTGGAATTT AACGTATGAA AACTTCTGTT
TTAGGTGTGG TTATGCCTCT CTTTTAACGA TCTTTGTAAA TTGTTTGCTA CTTTTCTGAC CGACGACAGA GTTATTACTG
TCACTACACA CATCATTGGA AGATTTTCGC GGTTCTTTAC AAATTATATA TGTTCTTTGA TCCTACATAT TTGATCTCTT
ATAC

>Vigan.10G210900.01
ATGCAAGAAC CGAGACTGGG AATGATGGGC GGGTTAAGCG GCGAGGTCTC CGGCGATCAC CACCGTCAAC TGAAGGCGGA
GATAGCCACA CATCCGCTGT ACGAGCAGCT CCTGGCTGCA CACGTCGCAT GCCTCCGTGT GGCCACTCCC ATCGACCAAC
TTCCTCTCAT CGATGCTCAG CTATCTCACT CTCACCATCT TCTACGATCT TATGTCTCTC ACCATACCCA CTCTCTCTCC
CCCAATGACC GCCAAGAACT CGACAACTTC CTGGCACAGT ATTTGATAGT TTTGTGTACT TTCAAAGAAC AACTTCAGCA
ACATGTCAGA GTCCACGCCG TTGAGGCTGT CATGGCCTGC CGCGATATCG AAAATACCTT ACAAGCTCTC ACAGGAGTGA
GTCTGGGAGA AGGAACTGGT GCAACAATGT CAGATGATGA AGATGAGTTA CAGATGGATT TTTCTTTGGA TCAATCCAGC
GCTGAAGGGC ATGACATGAT GGGATTTGGT CCCTTACTTC CTACAGAATC TGAAAGGTCA CTGATGGAGA GAGTTCGTCA
GGAACTAAAG ATTGAGCTGA AGCAGGGTTT CAAGTCAAGA ATTGAAGATG TCAGGGAGGA AATATTAAGG AAACGTAGAG
CTGGGAAATT ACCAGGTGAC ACAACTTCTG TGTTAAAGAA TTGGTGGCAG CAACATGCAA AGTGGCCTTA TCCTACTGAA
GATGACAAGG CAAAACTTGT GGAGGAGACA GGGTTGCAGC TGAAGCAAAT TAATAATTGG TTCATCAATC AAAGGAAACG
CAACTGGCAC AGCAATTCTC AATCGGTTAC CTCTTTGAAG TCGAAACGCA AGAGGTAG

>Vigan.10G210900.01
MQEPRLGMMG GLSGEVSGDH HRQLKAEIAT HPLYEQLLAA HVACLRVATP IDQLPLIDAQ LSHSHHLLRS YVSHHTHSLS
PNDRQELDNF LAQYLIVLCT FKEQLQQHVR VHAVEAVMAC RDIENTLQAL TGVSLGEGTG ATMSDDEDEL QMDFSLDQSS
AEGHDMMGFG PLLPTESERS LMERVRQELK IELKQGFKSR IEDVREEILR KRRAGKLPGD TTSVLKNWWQ QHAKWPYPTE
DDKAKLVEET GLQLKQINNW FINQRKRNWH SNSQSVTSLK SKRKR*