GBrowse Details

Vigan.10G202800.01

Basic Information:
Name: Vigan.10G202800.01
Multiple alignment
Variant Information
Position: Chr10:25491500..25493854 (- strand)
Length: 2355
Functional Information:
Description: Similar to Tonoplast intrinsic protein. [G2XKY2, Glycine soja]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.34,0.13,46.92,15.77,28.00,31.30,732.44,79.29
Arabidopsis thaliana homolog: AT5G47450.1
Automatic updates:
Name: NM_001251409 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527333 (LOC100527333), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:25491500..25491819 (- strand)
Length: 320
Type: three_prime_UTR
Position: Chr10:25491820..25492194 (- strand)
Length: 375
Type: CDS
Position: Chr10:25492287..25492534 (- strand)
Length: 248
Type: CDS
Position: Chr10:25493654..25493780 (- strand)
Length: 127
Type: CDS
Position: Chr10:25493781..25493854 (- strand)
Length: 74
Type: five_prime_UTR

>Vigan.10G202800.01 class=Sequence position=Chr10:25491500..25493854 (- strand)
TGAGGCAAAG TAGTAGCAGT AGTTAATAAT AGAAAGATAG GTTGTTTGGT TTTGAAGTAA GGGAGGTGCC AAAAATGGTG
AAGATCACTC TTGGTAGCTT TGAAGACTCT TTTAGCGCTG CCTCTCTCAA GGCCTATTTT GCAGAGCTTC ATGCCACTCT
AATTTTCGTC TTCGCTGGTG TTGGATCAGC CATTGCTTAC AGTAAGTCTT CAACCGCCAC TAATTATGTA TATACTGTCT
TTCTTTTTCT GTTAAAAAAA CCTACCCGAG ACCAACACTC TCAAACCAGA ACAGTAATTT CATACTTCTC ATAACACTGT
CTCTTGGTCA CGTAAATGAA AAGAAAGAAA AAAAAAACAT TTGTGCGTGT ACGTAAAACA ATTACAATTA TCACTAAGCT
TGCTAGAGAT CTAACAGTTA GTCAAAATTA AAACCGTTTG TGTATGTAAC AGGTAAATGT AACTCTCAAG CAGGATGTTA
AGATTGAGTA AACTCAATTT CTAGAAAACA TTTTCCATTA ACTAAAGTCT CGGGTCTCAA ATATGAACAA GGACAAAACT
AAATTTTATT TAATTGGAGA GCAATAGATA CCTGCCTGTA ATATAGCATA TATAAGTTTT CTCATTATGT ATGCAAGTGA
AAGAATATGA TTATACTTAA TTTGAACTAA ACACCTCTAA TTCTTAATTT TAAATATTAT ATGTATACTT CAGAAAAGCT
TGAAATGTTA TTTTTAGCTC CACTATTTTT GTGATTCTTG TATATTCCAA CGGAAAGTTC AATGATAACT CCAAATAACT
AATGAGTGAT GATGCACAAA CAATCCATTG TTTATTAAAT ACTTTTTAAA ACAGTATTTA GAAGAAGAAA AATTAAGGAT
TTAGTTTTAA TGAAATTAAA ATAAAAAATT ATTTTACAAG TGTTACTTTT ATAAGAATTA ATGACAATAA TTTATATTCG
AGGGAGATGA TAAAGAAAAA AAAAGCTAAA AGGAAAAAAT AAAAACCCTT ATTTTGTGAA GATTAAAAAA TGAATTAAAT
ATTTTTAAAA AGATTGTCAA TTTCTAATAT TCCAGTCTAA CAATATGAAC GTGCTAATCA CGGATTAAGT TTTATTTAAT
TAAACCATTG AAATAAATGC AAGTAAATTA AATAACAGCA AGTGTTTCAT ATAGGTATAT GTACGATGAG TATAAAACAA
TGTTGGTGAA AGTATCCATA AAGAAGGAAT ATAGTATAAT AGTTTTATGG TAGTGCATGC ATGTTAGTGT TGGCAGAAGT
AACACATAAT GAAGTGGTTG GTTGTGTTTG TTTTACATAG ACGAGGTCAC GAAAGATGCT GCATTGGATC CAACGGGGCT
GGTGGCAGTA GCGGTGGCAC ACGCATTCGC ACTGTTTGTA GGTGTGTCTG TTGCAGCCAA CAGCTCAGGT GGACATTTGA
ACCCAGCTGT CACATTTGGA TTGGCTGTCG GAGGAAACAT CACCCTCCTA ACTGGTTTCT TGTACTGGGT TGCTCAATTG
CTGGGTTCTA TCCTTGCATG TCTCCTCCTC AATTTGGTTA CCGCCAAGGT ACATTAATAT TTCCAAATGA TATTATTTTA
TTTTCACAAT AATCGAATAT ATCTTCAACT TCTAATGCTG TTTTGGTTGA TGTCACACAG AGCATTCCAA CCCATGGACT
GGCTTATGGT GTGAACGCTT TCCAAGGTGT GGTGTTTGAA ATTATTATCA CTTTTGCGTT GGTTTACACA GTGTATGCAA
CTGCAGCTGA CCCTAAAAAG GGCTCATTGG GCACCATTGC ACCCATTGCT ATTGGGTTCA TTGTGGGTGC CAACATCTTA
GCTGCTGGCC CATTCAGTGG TGGGTCCATG AACCCGGCCC GCTCATTTGG CCCAGCTGTG GTTAGTGGAA ACTTCGCTGA
TAACTGGATC TACTGGGTTG GCCCATTGAT TGGAGGAGGT TTGGCTGGGC TCATTTATGG AGATGTCTTC ATTGGTTCCT
ATGCCGCTGT CCCAGCCTCT GAAACCTATC CTTAAAAAAC ATATCTTATT GTTCTCCTTT GTTCCTTCAG CTTTTTCTCT
TTCTTCAACG TTTGCTGTCC TGTACCTTCA ATTTTCCTTT CACCGCTTGT AATAATTCTG TAAATTTTAA ATTCAACTCG
AAGCATGCCT TGTTGGAACT CCCGTTATTT TTCCGTTTTC ATCCTAACGG TAATAACAAC CGCGAGCGAA TAACTTTTTT
GACACAGTCA AACTGACCAG TGGCTTTATT GCCTCTGTAA TCTAAAACGT TGCTATATTC TGAAACATAA CTACTAACAA
AACTTTTCCT CGGATCTGTA ATCCTTGTCC TAATT

>Vigan.10G202800.01
TGAGGCAAAG TAGTAGCAGT AGTTAATAAT AGAAAGATAG GTTGTTTGGT TTTGAAGTAA GGGAGGTGCC AAAAATGGTG
AAGATCACTC TTGGTAGCTT TGAAGACTCT TTTAGCGCTG CCTCTCTCAA GGCCTATTTT GCAGAGCTTC ATGCCACTCT
AATTTTCGTC TTCGCTGGTG TTGGATCAGC CATTGCTTAC AACGAGGTCA CGAAAGATGC TGCATTGGAT CCAACGGGGC
TGGTGGCAGT AGCGGTGGCA CACGCATTCG CACTGTTTGT AGGTGTGTCT GTTGCAGCCA ACAGCTCAGG TGGACATTTG
AACCCAGCTG TCACATTTGG ATTGGCTGTC GGAGGAAACA TCACCCTCCT AACTGGTTTC TTGTACTGGG TTGCTCAATT
GCTGGGTTCT ATCCTTGCAT GTCTCCTCCT CAATTTGGTT ACCGCCAAGA GCATTCCAAC CCATGGACTG GCTTATGGTG
TGAACGCTTT CCAAGGTGTG GTGTTTGAAA TTATTATCAC TTTTGCGTTG GTTTACACAG TGTATGCAAC TGCAGCTGAC
CCTAAAAAGG GCTCATTGGG CACCATTGCA CCCATTGCTA TTGGGTTCAT TGTGGGTGCC AACATCTTAG CTGCTGGCCC
ATTCAGTGGT GGGTCCATGA ACCCGGCCCG CTCATTTGGC CCAGCTGTGG TTAGTGGAAA CTTCGCTGAT AACTGGATCT
ACTGGGTTGG CCCATTGATT GGAGGAGGTT TGGCTGGGCT CATTTATGGA GATGTCTTCA TTGGTTCCTA TGCCGCTGTC
CCAGCCTCTG AAACCTATCC TTAAAAAACA TATCTTATTG TTCTCCTTTG TTCCTTCAGC TTTTTCTCTT TCTTCAACGT
TTGCTGTCCT GTACCTTCAA TTTTCCTTTC ACCGCTTGTA ATAATTCTGT AAATTTTAAA TTCAACTCGA AGCATGCCTT
GTTGGAACTC CCGTTATTTT TCCGTTTTCA TCCTAACGGT AATAACAACC GCGAGCGAAT AACTTTTTTG ACACAGTCAA
ACTGACCAGT GGCTTTATTG CCTCTGTAAT CTAAAACGTT GCTATATTCT GAAACATAAC TACTAACAAA ACTTTTCCTC
GGATCTGTAA TCCTTGTCCT AATT

>Vigan.10G202800.01
ATGGTGAAGA TCACTCTTGG TAGCTTTGAA GACTCTTTTA GCGCTGCCTC TCTCAAGGCC TATTTTGCAG AGCTTCATGC
CACTCTAATT TTCGTCTTCG CTGGTGTTGG ATCAGCCATT GCTTACAACG AGGTCACGAA AGATGCTGCA TTGGATCCAA
CGGGGCTGGT GGCAGTAGCG GTGGCACACG CATTCGCACT GTTTGTAGGT GTGTCTGTTG CAGCCAACAG CTCAGGTGGA
CATTTGAACC CAGCTGTCAC ATTTGGATTG GCTGTCGGAG GAAACATCAC CCTCCTAACT GGTTTCTTGT ACTGGGTTGC
TCAATTGCTG GGTTCTATCC TTGCATGTCT CCTCCTCAAT TTGGTTACCG CCAAGAGCAT TCCAACCCAT GGACTGGCTT
ATGGTGTGAA CGCTTTCCAA GGTGTGGTGT TTGAAATTAT TATCACTTTT GCGTTGGTTT ACACAGTGTA TGCAACTGCA
GCTGACCCTA AAAAGGGCTC ATTGGGCACC ATTGCACCCA TTGCTATTGG GTTCATTGTG GGTGCCAACA TCTTAGCTGC
TGGCCCATTC AGTGGTGGGT CCATGAACCC GGCCCGCTCA TTTGGCCCAG CTGTGGTTAG TGGAAACTTC GCTGATAACT
GGATCTACTG GGTTGGCCCA TTGATTGGAG GAGGTTTGGC TGGGCTCATT TATGGAGATG TCTTCATTGG TTCCTATGCC
GCTGTCCCAG CCTCTGAAAC CTATCCTTAA 

>Vigan.10G202800.01
MVKITLGSFE DSFSAASLKA YFAELHATLI FVFAGVGSAI AYNEVTKDAA LDPTGLVAVA VAHAFALFVG VSVAANSSGG
HLNPAVTFGL AVGGNITLLT GFLYWVAQLL GSILACLLLN LVTAKSIPTH GLAYGVNAFQ GVVFEIIITF ALVYTVYATA
ADPKKGSLGT IAPIAIGFIV GANILAAGPF SGGSMNPARS FGPAVVSGNF ADNWIYWVGP LIGGGLAGLI YGDVFIGSYA
AVPASETYP*