GBrowse Details

Vigan.10G198200.01

Basic Information:
Name: Vigan.10G198200.01
Multiple alignment
Variant Information
Position: Chr10:25136658..25140809 (+ strand)
Length: 4152
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerases isoform 1. [XP_007039660.1, Theobroma cacao]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.56,3.34,10.41,9.12,11.51,15.75,39.50,8.85
Arabidopsis thaliana homolog: AT4G17070.1
Automatic updates:
Name: NM_001255497 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP32 (GMCYP32), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Name: NM_001357164 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP31 (GMCYP31), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:25136658..25137005 (+ strand)
Length: 348
Type: five_prime_UTR
Position: Chr10:25137006..25137383 (+ strand)
Length: 378
Type: CDS
Position: Chr10:25138007..25138114 (+ strand)
Length: 108
Type: CDS
Position: Chr10:25138807..25138851 (+ strand)
Length: 45
Type: CDS
Position: Chr10:25139586..25139723 (+ strand)
Length: 138
Type: CDS
Position: Chr10:25140353..25140697 (+ strand)
Length: 345
Type: CDS
Position: Chr10:25140698..25140809 (+ strand)
Length: 112
Type: three_prime_UTR

>Vigan.10G198200.01 class=Sequence position=Chr10:25136658..25140809 (+ strand)
TTCTGTTTTA CTTTAATGTT TGGTATCAGC ATCGAATCGA AATCAAACCA AAGAAACAAA ACAACACGTT CTTGTAACAT
TGTCAAAGAC TCGTTTGGGA CCAAAAAAAT CGACAAAATG CCATCGATCT GAACTCTGAA CCCAGAGCGT CCAATTCAAA
ATTCTTTTCA CCTTTTCTTC CATTCTATGC TTTTGAATCG CCACGACGTG ATATGATCCT TCTCTCTTCG ATTTCATTTG
CACTTTCACT GTTGTTTCCC ACTTTCATTT CAAGGTCAAC GGTCTCGGTC TTGGTATTTT CCTGACTCAA TTGCTTACAA
GTTTATCCTT TTCCTGCTAA GCTCTCCAAT GGGTCGGAGG AGCAATGGAC TAAACTCTGT TCTCGCTCAC CGTTTGATAC
TCCTCTTCGT GTGTTTGGCT TCGGGCGGTT TGGTCTACGC GCTTCTCTCT GCGGTGGTCG CAAATGGCAG AAGCAGAGTT
TCAGACTTTG GGAGGCTGGT TGATGAGGGT ATGGCGGTGC AGAATGAGGG AGGGTGCTGT AGGGGGATTG AGAATTTGGA
GCTTTGGGGT TCAGCTGTGA AGTGGGGTTC TGAGTTTAAG TTCAACAATT CTGAAGGATG CTGCAACGCG TGCAAATCAA
TGTGTTCAGG AAAAGATGGA CCTTGTCTCT GTGATACTTG GGTCTTTTGT GGGGATCGTA AGGCCTGTGG ATCCAAGTTC
GGTGAGGTAA GTTACTTAGT GTGTGATTAG ATAACATTCT CTGTAAACCT TTTTGGGAGA AGGAAATAAA AAGAAAAGAA
AATCCTTTTT TCTGGTAAAT TGAATTACCA GAAGTTCGTT TGTAGAATTT TTTTGTGTTA ACTTTTATAG AAAATGATTT
TTAACTTAGA TATACGTTAG TTTTTATTTT ATGAAGAAAT TTATTTAATA TATGCTTATT CTAAAATTAC TTCTGGAGTT
AGATAGACCA GGTTTGCTAT TTTTGCAGTT GCCTTAGCTT ATGAAGATCT CCCATTTTTG TTGATATTTT TGGATTCATT
CTTGCTGTTT AGAGTTGACT TGGAACTTTG GGTTCTATTT AGGCAAACTC CTTTATTACT ATTTATGAGA GAAGAAAATA
ACAAGTAAAA TGTATTGAAT TTTTCTACAA GTTAAAATTT CCTTGTCACC TAGAGTTGCA TAGCTTTCAT AGCTTTCGTA
GAAGTTAGAG TGCACCGTTT TCATGACTGC ATAACTTTCA TATGCATAAA AAATGGAGGG CTTCTTTAAA AGTTATTATT
CTTTTGATCA AAACTCTGAC ACGAGACTTG GAAGTCATAG CATAATAGCA TTCGATTTTG TTGGTTCAGT GTTGGTTGAA
GAAACAGAAG GACAGCTTGG CACCTGAACG GCAAGAAGGA GTGCCTCCAG GGGAAGTGGT TGGTTGGACT TCTGGTCTTA
TTTTTGGGAA AGGAGAGGTA AGAGAGAAGT TTGGTTTTTC CATTGTTATC TTTATTAAAA TGTTGTTTGT CAGTTTATCT
GCAAATTCAA TTTGATGAAC ATTGTGTTGG TGAAGTGTTT ACATTGAACT GGCGTGTGAT TTGATATTCT CTTTCAGATG
GCTCAGAAAT TCATCCTGTA CCCGAAACAA AATTGTCTAG TGTTTTCTTA TATGTGCTAA CTATCTCCAA AATGCATGTT
TTTCTGTTGT GTCTATTAAG TTTTTTTCCC CATTCTTTTC TACTTGAATA ATTTAGTAGA TTCTGTGTTG TGATGTGTAC
AATATGGATC TGATTGAAGC AGTTAGGTCA GGTTGACTAG AGAGACAGGT TCAGGAAATG GGCAATAGAT AGTGGTAGTA
CATTGGAAAC TAGGAATGGG GAGATACGGT AGTAGCCACC TACCATGTTG TTCACATGAG CAACTGCTAT TTATGTTAGA
GTGTTTTGAC TTGACACACT CACCTTTTGT AGAAATGTCT TACTGGACAA CTGTTATGTG ATTAGTTGAA TCTTTGGTTA
ATTACATATG CAGTAAAATG GTGTCTTCTC TTGGCGTACA TAGTTATATC TCTCCCACCC CTATTTTGAT GTATCACATA
TTTGGAACTT TATCAACTTC TGATGGGTTA TCTTATTATC CGTGTTCTTT CTAATTCATC TATTCTCAGG GTATTATTGG
ACTGGAAACT GAACATGGAA CTCTTCATAT TAAAGTAAGT GCTTCTTCTC TTGACATCTA AAATACAAAT GCTTTGATAT
TGCAGTTGAA CTATTGACAT GTGTGTAAAG TTAGTATTTG TATATTACAT ATAGAAGCAC ATGGGTAAGA AAAAAGAGTT
CCAGTGACAA ATGGAAGCAC CCTGTACTTG GTCAGGGTCC TTACTGCATC TGTGTACTTT CTATGTTTGT TGGATGTCCT
TGTCCTGGGA ACCACTAATT TTATGTCTAG TTTAAATAGC TGACCGTGAG ACTATTATTT GAATACAAAT GTTCATGAGA
AATATGCACT GAGGAAATTC ATCAGTGTTG TAGTTTTGTT GGTTATGATA ATTCTTTGTG TGGCTCGTAC TTCCTTGTTT
AAGAAAATAT GATAGATCAG TTGCTGGACC TTTGCTGGAT AATTATGGAG AAGCTCACCA TTTTAATACA TGATAAACTA
GATGGAGTAT TTCTAGTAAA GTCGGAAAAT TATCTGTATT TGTTGATATT AATAATTACA CAGAGTTCAT TGACTATGAA
ACGGGATGCT CATGCTTCTT GACATTCTGT CAATCCTTGA TGTTAACTCT TCTTATTGCA TCTTATTTTT CTGTTAATAC
ATCATGTATC TTGATTGGAT CTTGATTCAG CTTACTCTAA GAATCCCTGT TGTATTGTAT TTTGAAATTG CCTAGTCACG
AGTGAGGAAT ATGTTTATTA ACTGAAGGAA ATTCTTTATT CACTGCAGCT TTTACCTGAC TGTGCTCCAC ACTCCGTTGC
CTACATTCTG GAATTGTTGT CTTTGCACCA TTGTGCTGGC TGCCAATTTT ACCGTGCAGA GAGCCGAGGT CAATCATGGG
ATTCAGAAGG AAACCATATA GAAAATGTAA GACTGATTTT CCCATCTGAA TCTGATGGAT GATTGGATGC ACACACACAC
ACATCTACTT CAATATGCAG TCATCTGCAA ATTTTGCTAT GAATTTCTGC ATTAAAATCT TATTCTCAAG CATTGACAAA
TTTTTCTTTA GTTTCTAGTT TCTACAAATT AACAAAATTG TATATTTTGA ACCCCTCGCT ACTTACTAGA AACTTAAAAG
CACATTTATT ACGTGAGAAA CTGTGCCTAA AAAGCTGAAC TACCCATAAT GAAGAATTAA GCCACTTTGC TGACCACAAC
TTCTAGAAGT GAACCTTTGA CATTCCAGAA TATGCGAGTT CCTATTGCAC ATATTTTTTA CAATTTTTAA GGATTAAATT
AAAATACATT GTATTTTCAA AGACCCAAAC TTTATGTAAA CTTTTCAATT CATATTGAAA GACTTGTTTT TAACTTTTTT
TTTTCCAAAC AAAAATGAGG TTAGAAAAGA TTACCGTGTC AATCTGAGGC CATTGACCTG TTATTCCCAA GGAGAGAAAG
ATTTTGCATG TTCAGAGTAC CGTTGTAAGT GCAAGCAATA ATGTTCGTAA TGTTGGATTG CAGTAACAAT TAATGGTTAT
GGTCCTCATT TGCAGGCTGG CTTTGGTCCA CCTTATGCAT TAATTCAAGG GACACTAGAA GCACAAGGCA CAGCTTTCAA
TAAACTTCCT GTGGAAGATT GTCCAACCCT TAGAAGGGGT TCTGTTGCTT GGATTGGTTC TGGTCCTGAA TTCTTCGTTA
GCCTTGCTGA TCATTCAGAG TGGAAACATG AATACACTGT ATTTGGTTCT GTTCTTCCAG AAGACATGCA TATTGCAGAG
AAAATCTCTA CACTCCCCAC AATAGCTGAT GTGTGGAACA ATGTCAACGT GACGGTTTTG AAAAATCCTG TTCCTCTGTT
GGTCCGTAGA ATCCAGAAAA GCCACGTAGA TGAAATTTGA AACAAGCTGT GCATCAATGT AGATTGCAAT TCTTTTTTGT
TCCAAAGCTT ATAGTTAAAG TTTGCATTAA CTTTTGTTCT GTCTAAACTT TTTCTTCATC TTATCATTAT TA

>Vigan.10G198200.01
TTCTGTTTTA CTTTAATGTT TGGTATCAGC ATCGAATCGA AATCAAACCA AAGAAACAAA ACAACACGTT CTTGTAACAT
TGTCAAAGAC TCGTTTGGGA CCAAAAAAAT CGACAAAATG CCATCGATCT GAACTCTGAA CCCAGAGCGT CCAATTCAAA
ATTCTTTTCA CCTTTTCTTC CATTCTATGC TTTTGAATCG CCACGACGTG ATATGATCCT TCTCTCTTCG ATTTCATTTG
CACTTTCACT GTTGTTTCCC ACTTTCATTT CAAGGTCAAC GGTCTCGGTC TTGGTATTTT CCTGACTCAA TTGCTTACAA
GTTTATCCTT TTCCTGCTAA GCTCTCCAAT GGGTCGGAGG AGCAATGGAC TAAACTCTGT TCTCGCTCAC CGTTTGATAC
TCCTCTTCGT GTGTTTGGCT TCGGGCGGTT TGGTCTACGC GCTTCTCTCT GCGGTGGTCG CAAATGGCAG AAGCAGAGTT
TCAGACTTTG GGAGGCTGGT TGATGAGGGT ATGGCGGTGC AGAATGAGGG AGGGTGCTGT AGGGGGATTG AGAATTTGGA
GCTTTGGGGT TCAGCTGTGA AGTGGGGTTC TGAGTTTAAG TTCAACAATT CTGAAGGATG CTGCAACGCG TGCAAATCAA
TGTGTTCAGG AAAAGATGGA CCTTGTCTCT GTGATACTTG GGTCTTTTGT GGGGATCGTA AGGCCTGTGG ATCCAAGTTC
GGTGAGTGTT GGTTGAAGAA ACAGAAGGAC AGCTTGGCAC CTGAACGGCA AGAAGGAGTG CCTCCAGGGG AAGTGGTTGG
TTGGACTTCT GGTCTTATTT TTGGGAAAGG AGAGGGTATT ATTGGACTGG AAACTGAACA TGGAACTCTT CATATTAAAC
TTTTACCTGA CTGTGCTCCA CACTCCGTTG CCTACATTCT GGAATTGTTG TCTTTGCACC ATTGTGCTGG CTGCCAATTT
TACCGTGCAG AGAGCCGAGG TCAATCATGG GATTCAGAAG GAAACCATAT AGAAAATGCT GGCTTTGGTC CACCTTATGC
ATTAATTCAA GGGACACTAG AAGCACAAGG CACAGCTTTC AATAAACTTC CTGTGGAAGA TTGTCCAACC CTTAGAAGGG
GTTCTGTTGC TTGGATTGGT TCTGGTCCTG AATTCTTCGT TAGCCTTGCT GATCATTCAG AGTGGAAACA TGAATACACT
GTATTTGGTT CTGTTCTTCC AGAAGACATG CATATTGCAG AGAAAATCTC TACACTCCCC ACAATAGCTG ATGTGTGGAA
CAATGTCAAC GTGACGGTTT TGAAAAATCC TGTTCCTCTG TTGGTCCGTA GAATCCAGAA AAGCCACGTA GATGAAATTT
GAAACAAGCT GTGCATCAAT GTAGATTGCA ATTCTTTTTT GTTCCAAAGC TTATAGTTAA AGTTTGCATT AACTTTTGTT
CTGTCTAAAC TTTTTCTTCA TCTTATCATT ATTA

>Vigan.10G198200.01
ATGGGTCGGA GGAGCAATGG ACTAAACTCT GTTCTCGCTC ACCGTTTGAT ACTCCTCTTC GTGTGTTTGG CTTCGGGCGG
TTTGGTCTAC GCGCTTCTCT CTGCGGTGGT CGCAAATGGC AGAAGCAGAG TTTCAGACTT TGGGAGGCTG GTTGATGAGG
GTATGGCGGT GCAGAATGAG GGAGGGTGCT GTAGGGGGAT TGAGAATTTG GAGCTTTGGG GTTCAGCTGT GAAGTGGGGT
TCTGAGTTTA AGTTCAACAA TTCTGAAGGA TGCTGCAACG CGTGCAAATC AATGTGTTCA GGAAAAGATG GACCTTGTCT
CTGTGATACT TGGGTCTTTT GTGGGGATCG TAAGGCCTGT GGATCCAAGT TCGGTGAGTG TTGGTTGAAG AAACAGAAGG
ACAGCTTGGC ACCTGAACGG CAAGAAGGAG TGCCTCCAGG GGAAGTGGTT GGTTGGACTT CTGGTCTTAT TTTTGGGAAA
GGAGAGGGTA TTATTGGACT GGAAACTGAA CATGGAACTC TTCATATTAA ACTTTTACCT GACTGTGCTC CACACTCCGT
TGCCTACATT CTGGAATTGT TGTCTTTGCA CCATTGTGCT GGCTGCCAAT TTTACCGTGC AGAGAGCCGA GGTCAATCAT
GGGATTCAGA AGGAAACCAT ATAGAAAATG CTGGCTTTGG TCCACCTTAT GCATTAATTC AAGGGACACT AGAAGCACAA
GGCACAGCTT TCAATAAACT TCCTGTGGAA GATTGTCCAA CCCTTAGAAG GGGTTCTGTT GCTTGGATTG GTTCTGGTCC
TGAATTCTTC GTTAGCCTTG CTGATCATTC AGAGTGGAAA CATGAATACA CTGTATTTGG TTCTGTTCTT CCAGAAGACA
TGCATATTGC AGAGAAAATC TCTACACTCC CCACAATAGC TGATGTGTGG AACAATGTCA ACGTGACGGT TTTGAAAAAT
CCTGTTCCTC TGTTGGTCCG TAGAATCCAG AAAAGCCACG TAGATGAAAT TTGA

>Vigan.10G198200.01
MGRRSNGLNS VLAHRLILLF VCLASGGLVY ALLSAVVANG RSRVSDFGRL VDEGMAVQNE GGCCRGIENL ELWGSAVKWG
SEFKFNNSEG CCNACKSMCS GKDGPCLCDT WVFCGDRKAC GSKFGECWLK KQKDSLAPER QEGVPPGEVV GWTSGLIFGK
GEGIIGLETE HGTLHIKLLP DCAPHSVAYI LELLSLHHCA GCQFYRAESR GQSWDSEGNH IENAGFGPPY ALIQGTLEAQ
GTAFNKLPVE DCPTLRRGSV AWIGSGPEFF VSLADHSEWK HEYTVFGSVL PEDMHIAEKI STLPTIADVW NNVNVTVLKN
PVPLLVRRIQ KSHVDEI*