GBrowse Details

Vigan.10G168500.01

Basic Information:
Name: Vigan.10G168500.01
Multiple alignment
Variant Information
Position: Chr10:22441755..22446002 (+ strand)
Length: 4248
Functional Information:
Description: Similar to Uncharacterized protein. [I1J8X6, Glycine max]
InterPro: TB2/DP1/HVA22-related protein (IPR004345)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:116.94,122.63,24.67,26.18,28.43,21.71,31.98,24.69
Arabidopsis thaliana homolog: AT4G36720.1
Automatic updates:
Name: NM_001252875 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max HVA22-like protein k-like (LOC100811809), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:22441755..22441893 (+ strand)
Length: 139
Type: five_prime_UTR
Position: Chr10:22441894..22441929 (+ strand)
Length: 36
Type: CDS
Position: Chr10:22442216..22442274 (+ strand)
Length: 59
Type: CDS
Position: Chr10:22442368..22442465 (+ strand)
Length: 98
Type: CDS
Position: Chr10:22444184..22444235 (+ strand)
Length: 52
Type: CDS
Position: Chr10:22444473..22444536 (+ strand)
Length: 64
Type: CDS
Position: Chr10:22445338..22445433 (+ strand)
Length: 96
Type: CDS
Position: Chr10:22445510..22445582 (+ strand)
Length: 73
Type: CDS
Position: Chr10:22445664..22445776 (+ strand)
Length: 113
Type: CDS
Position: Chr10:22445777..22446002 (+ strand)
Length: 226
Type: three_prime_UTR

>Vigan.10G168500.01 class=Sequence position=Chr10:22441755..22446002 (+ strand)
CTCTGCCTCT CTTCGATTTC TTTTGGTGGT TAATGCTTTT GTTTTTTTAT AGGCGGTTAG TATTAAAACT GAAGCGTATA
AAGGCATGGA CGAATTGACC TAGCAAGTCG GAAGCGAAGG GAATGGTGCC TAGGGAACTA TGATGGATCT CCTCGGATCA
AACCTAACAA GCGAAGTTCG CATCGATCTT TTTCTCTCTG ATTAATTTTC GTCAACTTCT TTTTTGTTCT TTTTTTTTTC
TAGGGTTTTG ATTCTGCCTC CAACTGCCAC CAAATTCTTC GTTTCAATTA CCTCTTTCTA TTAATCATTG CAAATAAAAC
ACGATTTCGC TAATTGCTTG TATCAATGAA CTACGAGATA TATTAATTAT TAAAATTGTT GGCTGTATCA TTCTGCGGAA
TTTGTTTGTT TGTCATACAT GATTAGGTTA TTGATGTGTG ATTGTGAACG ATACGGTGCA GGTTGGACTC CGTTTGCTCC
TTTGTCCTCT TGGTTCCAAC GTCGTAATTC GAACAGCATG GTGAGATATT TCAATTTTGC TATTAGCAGT TATGATTTGA
AGGAGGTATG TGGTTAAATT TTTTGTTTTG CCGTTGATAT TCTGATTTTG TAGTTGCGGT GTCGGAGTTG CTTTGCCTGT
TTACTCTACG TTCAAGGCAA TAGAAAGTAA AGATCAAAAT GCTCAACAGA ACTGTCTTTT CTACTGGGCA GGTACGAATT
TGCCTAACCG TTTATTTTCT ATTTTGATCT CCTATTAGCA ACCCCGTATA TTAGACTCTA AGATATAGAC GAAAAAGAGA
AACTATACTC TGATACTGTT GTGGTGTATC CAGTTTTCTG TTTTTAGGGG AGAACCTACC AGGGCCACTG CATTGGCAGT
GGCTGGAAAG GTTTCGTGAG GTTTGTCGTT TAAAAAATTA CAAGAAAAAA AGTTAAAAAC TTCCTACTTG ATTCATAGAG
CATGATGGAC TCTCACTAGT TTCTACACCT AATTAGCATT CTAGTGTTAC TATCTTGTAT TTTTGTTTTT CTTGCTTCTT
GACAATAAAG CAAGTGTGGA GCAATTTCTT GAAAATCCAA CATAGCGGGC CTATAGAATG TATGTATGCT GGATAAATTG
CAAAACTTTT GTTTAGATGG ACTTGACAGA AAAAAATCAC TTTTCTTTTG ATATTTGTTA GATTGAGTTC GTGATTTTCT
AGTGTTGTAG CATGTGTATC GCATTGAATA CATATTTATC TTTGGATTTA CAATAAACCA TTTAAATTGC GATGTAAGAT
TATTTTTAAC TATCAACAAT TTCTTTCAAA AAAACATACT AAAATTCAAT TTAGATATAG CGATAATAAA TTGTTAAGTC
AAAGGGATAG GCAGCTAAAG AATTAAGTAT ACAGATAACG ATAACAGGAA ATAGAGATTA ATAGAATTTT ATCCCATCTC
CTTTTTTTTT ATGCATCTTT CCTTTCACTG TGTTGCTTGT CGTTGGACTT GCTAACACTT GTTCCTGAGC ATCTTTAGTT
ATTAGAAGAA GATTCGTAGG AACCACATAT GGACCCAACT CAACGCACTA ATTGATTTAT CAGAAGATGA AAATTGGATC
CTAAGACCGA GCTGTGATTC TGAGTCACGA TTAAAACAGT TTCCTACATA TGGGGGTCCT ACCCAACGTA CTAATTGATA
TATGAGAAGG GGGAAATTAG GTCATAAAAC TGAGCTGTGA TTCTTACCCT CAGGTATTAC AGCTTCCTAC AGCCAACACA
GCATATCCTA TTCTGATAGC TGATGACAAG TTACTGATGT TCTAACCAAG TTCTGTTGAA ATTGAGTTAC AATGTTGGAA
TAGAAGGGGT TTAGGATTGT TGGATTGTAC CAAGAATTGT AAGCTTAAAC TATAATGCAA AACCATTTTT AAACATGTAC
GTATGCATAC ATCTCCATTA AAAGTAACAC TGATAAGGAA CCTAATAAAA CATCAGCCTA ACAATAGCTG CCAAATAACT
TAGCACACAG AAGTGACAGC TTGAAAAAGA AAAGACATGA GGCAATAGTT TCCTGTTGGA ATGAAGAAGC ACATGAGAGA
GGGAAGCAAC AACAGCTAAT GAAGGGGTAA CGGTTTTCTG TCAGTTATGA AAGAGAGGAG AACAATGGTT AGGAGTTAGT
CAATTTTGGC TTAGGCACAA GATATGCTGA TTTTTTTTTC CCGGCACTGG ACTGGATTGC ATGACCCAAC TTGCTCAATT
CGTGCCAATG GTGTATATTT TGCACAAAAC TCCAATGATT CATTGCCTCT TGACTGCTCC ATATGCTTGT GCTTCTACTT
GACTTGTGAC TTTTGGGAAG GAAACAATTT GTTGGATCTA GTTTAAATGA ACATAAAGCA AATTATATTA CATTATAGTG
ATTTTTTTTC TCTTTTTTTT TTTTTGCAGC CTATGGTTCA TTCAGCCTTG TTGAAGTGTT CACAGACAAG CTTATTTCGT
GGTATAGTTT GATCACTTCA TGATCCATCA ATTGGATTGA TGTGTATACC CCCTTTGATT TTCAGAGTTC TAGCTTTATT
GTCTTCTCAA TGTGTTATAC ACTACCTTTT TGTGATAATA TTCTCTCTCC ATTTTTTTGT TATTCTTTTA CGGCTGTTAG
TATTATATGC ATCTGGATTA TTAGTTATGT TAGACTCATA ATGAACTTAA TCACTTGTAA TTTTAATTAT TTTTGTAGGT
GTCCCATGTA CTATCACATG AAGTTTGCAT TTCTTGTCTG GCTTCAACTT CCACCCACCA GTGTGAGTTC CATAGAATTA
GATTGACTGT ATAATGATGT TTAACCCATT TTTAACTGTT TTTCCTTTTT AAGTGTTCCT GTCTTATGTC TCTTGTGCTA
TTTTTCCCTT CGTAGTTCTC ACCCTATTTT TCTTAATTTC CTTTTACTTT TACCATGATT TGGTCATGTA TCTCAATATC
TCAAATAAAT CTGCAGTATT TTATAAGCAT AATCGCCACA ATTGAAATCT TTTTTATTTT CTTTTGCTAT GCGTGTGTGG
TTTTGTCGAA GCAAGTGGGA GCAGTATGAA TTGGGAAAAA CTGTATGGGC AATTTATTTG GTAGGCAAAA GAGACAACTA
ATGTATAAAA CTACTGAATT GCATTTGAAG TTGGGAAGAA AAGTTGACAT GAAACTGCTT AAATCTAAAT GTAAACCTAA
TCCTGTAAGC TGGGGGCGTG AATTTTTCTA CATGTACAAT GTTCATTTTT TTGATACCTT TTTTAATTGT TAAATTATAG
TTGCGCATTT AGATGAAGCT CTAATGTCAT TTTTAGACAG CACATTTTCA GTTTGCTCTT GCCATATTCT TAGTCGTAAA
TTCTTTAATA GATTGGGAAT TTGTCTACTG TAATTTTTTG GAGGAATTCC CCTTCCAAGT TATTAGCAAT TTTTTTATCC
TCCATCTTCC TATTTTTGTA TATGTTTATT GTTATTTATA TCTCTATTGG CTTGTATAAT ATGTTTTATG GTTGACAATT
TGTCTGTTTA ATGCCTCTAT ACCGTTTTTT TTTATTTTGC TGAAAATTGC TTTGTTCAAA CAGGGAGCAA AGCAATTATA
TGCGAACCAC CTGCGCCCCT TCTTGTCGAG GCATCAAGCG CGAGTTGATC AAGTGTTGGG TTTTGCATAT TGTGAAGTGG
TATGTCTAAT ACACGTCTAA TATCTTTTGT GAACGACTGT ATCTGACGGT GGAATTTGAC TTGTTACACT TTCAGATCAA
ACTGGTCAGT TCATACCATG CAGAGATCAA GCTTGTCAAG AGCATGGTAG TAAAGATTAC CGGATCAGGT GAAACAATTT
TGTTTCTGCC CTTTGCAATT GCCGCTACTT ATTACCCATG TAGGTTACTG ACCAACAAAT TTAATGCAGC GGAAAAACTG
CTGAGAGGCA CTGCTGAATC TGATAGATCG CAACAACATA GTTCTGCTGA AGACCCTGCT GTGCCCTCTG ATACTGAACC
TGACCAAAAC CATAATCACT GATTAGTGCC CCCAGGAAAC CCCATGGACT GTAATAAGAG AGACTAGACT TTTTAATTAG
CTTTTTGAAG GTAGTCAATA TCAGGAATTT TGTAAATTTC AATTTTTTAT TCGAGTTTAG GATAAAGTGA AACTGTTCAG
TGTAACGATA AAGAAGTGAG AGAGTTAAAA AAACAGAATA ATATTATTTT AATGTTATTA TAGAAGATTT TATGTGATTT
TTCAATAA

>Vigan.10G168500.01
CTCTGCCTCT CTTCGATTTC TTTTGGTGGT TAATGCTTTT GTTTTTTTAT AGGCGGTTAG TATTAAAACT GAAGCGTATA
AAGGCATGGA CGAATTGACC TAGCAAGTCG GAAGCGAAGG GAATGGTGCC TAGGGAACTA TGATGGATCT CCTCGGATCA
AACCTAACAA GCGAAGTTGG ACTCCGTTTG CTCCTTTGTC CTCTTGGTTC CAACGTCGTA ATTCGAACAG CATGTTGCGG
TGTCGGAGTT GCTTTGCCTG TTTACTCTAC GTTCAAGGCA ATAGAAAGTA AAGATCAAAA TGCTCAACAG AACTGTCTTT
TCTACTGGGC AGCCTATGGT TCATTCAGCC TTGTTGAAGT GTTCACAGAC AAGCTTATTT CGTGGTGTCC CATGTACTAT
CACATGAAGT TTGCATTTCT TGTCTGGCTT CAACTTCCAC CCACCAGTGG AGCAAAGCAA TTATATGCGA ACCACCTGCG
CCCCTTCTTG TCGAGGCATC AAGCGCGAGT TGATCAAGTG TTGGGTTTTG CATATTGTGA AGTGATCAAA CTGGTCAGTT
CATACCATGC AGAGATCAAG CTTGTCAAGA GCATGGTAGT AAAGATTACC GGATCAGCGG AAAAACTGCT GAGAGGCACT
GCTGAATCTG ATAGATCGCA ACAACATAGT TCTGCTGAAG ACCCTGCTGT GCCCTCTGAT ACTGAACCTG ACCAAAACCA
TAATCACTGA TTAGTGCCCC CAGGAAACCC CATGGACTGT AATAAGAGAG ACTAGACTTT TTAATTAGCT TTTTGAAGGT
AGTCAATATC AGGAATTTTG TAAATTTCAA TTTTTTATTC GAGTTTAGGA TAAAGTGAAA CTGTTCAGTG TAACGATAAA
GAAGTGAGAG AGTTAAAAAA ACAGAATAAT ATTATTTTAA TGTTATTATA GAAGATTTTA TGTGATTTTT CAATAA

>Vigan.10G168500.01
ATGATGGATC TCCTCGGATC AAACCTAACA AGCGAAGTTG GACTCCGTTT GCTCCTTTGT CCTCTTGGTT CCAACGTCGT
AATTCGAACA GCATGTTGCG GTGTCGGAGT TGCTTTGCCT GTTTACTCTA CGTTCAAGGC AATAGAAAGT AAAGATCAAA
ATGCTCAACA GAACTGTCTT TTCTACTGGG CAGCCTATGG TTCATTCAGC CTTGTTGAAG TGTTCACAGA CAAGCTTATT
TCGTGGTGTC CCATGTACTA TCACATGAAG TTTGCATTTC TTGTCTGGCT TCAACTTCCA CCCACCAGTG GAGCAAAGCA
ATTATATGCG AACCACCTGC GCCCCTTCTT GTCGAGGCAT CAAGCGCGAG TTGATCAAGT GTTGGGTTTT GCATATTGTG
AAGTGATCAA ACTGGTCAGT TCATACCATG CAGAGATCAA GCTTGTCAAG AGCATGGTAG TAAAGATTAC CGGATCAGCG
GAAAAACTGC TGAGAGGCAC TGCTGAATCT GATAGATCGC AACAACATAG TTCTGCTGAA GACCCTGCTG TGCCCTCTGA
TACTGAACCT GACCAAAACC ATAATCACTG A

>Vigan.10G168500.01
MMDLLGSNLT SEVGLRLLLC PLGSNVVIRT ACCGVGVALP VYSTFKAIES KDQNAQQNCL FYWAAYGSFS LVEVFTDKLI
SWCPMYYHMK FAFLVWLQLP PTSGAKQLYA NHLRPFLSRH QARVDQVLGF AYCEVIKLVS SYHAEIKLVK SMVVKITGSA
EKLLRGTAES DRSQQHSSAE DPAVPSDTEP DQNHNH*