GBrowse Details

Vigan.10G160000.01

Basic Information:
Name: Vigan.10G160000.01
Multiple alignment
Variant Information
Position: Chr10:21826762..21831693 (+ strand)
Length: 4932
Functional Information:
Description: Similar to dolichyldiphosphatase 1-like. [XP_004509300.1, Cicer arietinum]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: catalytic activity (GO:0003824)
InterPro: Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.97,4.79,11.56,51.30,5.76,13.47,6.43,10.21
Arabidopsis thaliana homolog: AT5G66450.1
Automatic updates:
Name: NM_001255933 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative lipid phosphate phosphatase (LOC100791542), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:21826762..21826905 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr10:21826906..21827244 (+ strand)
Length: 339
Type: CDS
Position: Chr10:21829323..21829545 (+ strand)
Length: 223
Type: CDS
Position: Chr10:21830121..21830194 (+ strand)
Length: 74
Type: CDS
Position: Chr10:21831259..21831483 (+ strand)
Length: 225
Type: CDS
Position: Chr10:21831484..21831693 (+ strand)
Length: 210
Type: three_prime_UTR

>Vigan.10G160000.01 class=Sequence position=Chr10:21826762..21831693 (+ strand)
CAGAGAATGA ACTGGTTTGT TGGACTTTCC GTGGAGCGTC TTCCTTCATA GATAATAAAT ACCACAGAGA AAGACTAGCT
TTTGTGATGT TGGACTGTAG CCCCATCTTC TCCCATAAAC TAGAGAGGAT CTTTTTCCTC TCACATGGCG GCGGCTTCTT
CAATTTGCCA AGCTCCCTTC ACTCTTTTTC AGGGGTCAAA TTGTCTTAAA CGAAGAAAAT TGAAAAACAC TTCACTTCCT
CGTTGTTTTT CTCCTTCAAG ATCCTTACTT TGTAGTGGAT TTCTTTCAAG GAGACCTCTT TTGAGAAGGA ACTCGTTCTG
GGTATCGAAA ACTATGGATG AATCCGTGAG AACTTCTGCT TTCAGAGATG GAGAAGGGGA TGAAAACATC CAAGTGTTTG
AACAGGAAGC TTTCATCGAT GGACCATCCC CGTTTCAGTC AAAGTTTTTG TCGCATGAGG TGGAATACAA GCTCAATAAA
CTGGTTCGTA ATCCATCCTT CACGTTTTTC AATAATGTTT GGCCACTAAA GTTCTGAATA TTCACTCTTA TGATTCCCAC
CCCAAGTGGA GGGAATGTTT ACTCCTTTAA AGGAAATTTT CTATATATTT TCTTAAATGT ATTAGGTTTC TTTTGACATG
GTTTCTGAAA TGCACGGTAT TTGTAATAAG GAATGAATGT TAGCAGAACT GGAGTGTGGT TCCAAGAGAA AAAAGATACA
TTTTTATCAT ACTAGGCTTA ACCATGAACC CGTGGCTGGG AAGAGGACCC ACCAGTTAAT TTGGTTGTTA CATTGAAATA
TTTTATTTTT CTTTTTTCAC ACGACTGTAT AATCTGTATC ATGTTATTGA AGGTGAAAAA AGAATCGAAA TCCATGTTAT
TAAAAAATTT GTTTGCTACT ATTAGGTTCA TCTGAATATG CTATCCAATC TCGGAAACAT ATCATACCAC CTCTTTTTAC
AACCCAAGGT TTTCGAATTC AGAAATTTCA ATTGGAGAAA ATGCTATCTG AGAACAATTA GTCAATCATG GTTTGAGAAT
TCTTGTTGAT AGAATGCAAA GGAAAAGTTT TCATTGTGCT ATTAAAGGGC GCGTTTAAAA TAGTTTCTAT GCTGCGATTC
CAGAGGGCTA TTCCTGCAGG CTCAGCGTGT CTATGCTATA ACTACAGAAA GTTGAGTTTG GCCTCTGGAT ATGGAGAAAT
CCGTGAGTTC TCGTTGTCTT TGGCCCCCTT GGCCACGTCT TCAATTTCAT TAAGTCAGTT CGGTAGCTAG GTCCAATACA
CTTGTGATGT GTAAACAATG ACACTTATGT ACCACAGGCA GTAGCTAGGT GTGGATAAGT AGGCATAGAA TAGATTTGGT
TAAGTGTGTT TGCCAGCATG CTGAAGTGAA ACCAAAATAT CATGATCAAT AAATAAATAA TGCAGAAGCT ACTCAGTCTA
CTCTTAGTTA TATGAGAAGG AAATAACAAA TTGAATGGAG TTTTTCAGTA GTTCATTTTA GCTTATGGAT GAAACTCATT
TTATTTTATC TTGTAATTTT CTTATATGAA GAAGCTTATC TAAGTAGGAT CAACTTGTTA AATATTCCCT AAATAAAGAA
AGTGCTGATG GATTAGTTTT GGGAAACACA TCCTTAATAC ACGCTCTGTA TTAGTTTCTA CTGAAGTAGA TTTGTTTTTA
CTTATCTTTT TTGCTATGTG GCTTGAATAA AAAATGGATG TAAGGGAACA AGAAACAAGA AAGAATGCCA AAAGCTCAGA
ATCTAAGCAT ACCCAGCTTT AAGAGCATAT CCTTCATAGT CATGGCTTAT TGATCAATTA ATAGAACAGC TAATGTGAGG
AAGCAGAAAT AGTGGTACTT TAACAATGTT GTATTTTTCC AGAGGCCAGT AAAACTTTGA TATGATTTAG GCATCAATTG
TTATGCGTTC AAACACTTCG AAATGTGGGA TTTAGACATC CCATTATACC CAAGTTCCTC TCACATTACC ACTATGTGCA
TTCCCTTAAC AAATAGCCTC TGTTAAGGCT TTCATGCAGC AACTGCACAT CCATAAATGG AACAAAATAT CCTCTAGTCA
CTGACTTCAT GTTATATTCC TGGTATTGAG AACATGTCCA GCCAAGTTGC CTGCAACCTA TTAGTGTAAC TGATATATTT
GAATTATTCA TTGATTCTCC CACAGTGTTC TTAGTTTTCT ATATATGTTC TTCAGACAAT GGGCGGGGTC TTATAAGACC
TCGTTTTCCT TCTCACCGCA ATTTTGGAAC TCCTAATCAC CATATTTGGC TATGGGGTTT TTGTCTCTAT GATCGTTCTT
GTTTTAAGTG ATATAGTTTA AAGTTATGTG TACAAATAAA TTCTTTCAGT AGGATTTCAT ATGGTAAACC CTTTTAGTCT
TACAAAACTA AGTTTAATAT GGTTGGCTTG TTTTTATTGA AATTTAAATT TCAATAATCT GTTTGAATTC CCATCTTAAG
GCTTGGTCAT TGTAAAATTA TGTCCACATT AATGTTTAAC TATATTTTTA TATTCTAATG CATTTAGTGC TGATATTACA
GAGCAAGTGG ATAGTAACTG CCCTCTTTGG TGGTTTCATT CTTTGGAGGC ATGATGCAGA AGCCTTATGG TTTACCTCAG
GGTCAATTTT GAATGCATTG CTTTCTGTTT TGCTCAAACG TATACTGAAT CAGGAACGAC CTTCAACCCT GAAATCTGAC
CCGGGAATGC CATCTTCACA TGCACAATCC ATATTCTTTG CTGTCTTCTT TGTTATTTTG TCAGGTAATA TCTCGTAACA
GTTCTTTGTT CAGAAAAAAA TAATTTGCCA AGAGAGGTGG TTTACAAATC TTAACTTTGT GATAAATAAT CTGATCCTTT
CATAAATATT TTTATATATT CTTTCTGGTA GGTAGCAATA TAAAGCGATT GCACATTCCA TTTTGTATAG GTTCCCTTTT
CTGGAAGCTC AAAAGGTTAT TGTGATAAAA ATTTTGGTGG TTAAAGGAAC TAATCTATAG TTTTCGCGCT TGTAAATTTT
ATTTAAGTGT ATCTCTGCCT TTTATCTTCA GTATTCTATG TTGTTAACAT GGGAAGTGTC TGGTTTTCTG TTTTAGAATT
ACCTCATGAA ATGAAGAACT CCATTATTTT AGTTTCCTTT TCAGTGATGA CAATACAAAT TTCCATGGCA GTCATGTGAA
AGACTCAAAT ACAAGCCAAA AAAATCTTTA ATTAGAATTG TTTTGTCTGT TACGGCAAGG AAGTGCCGAT GTTTTTAGAT
TTCTTTGTTT TTCTTAAAGA CGTATAGAAT TATATGGTTT CACTATGAAC ATTTGCTTGT TTCTCTTATT ATATTGCAGG
CGTAGAATGG CTTGGGCTAA ATGTATTTAC CATTGCCATG AGTGGATTGG TCCTGACATT TGGTTCTTTC TTTGTAAGTG
TATAATATTT CCATTTAAGC CTTTAGTTTG TTGCCTCGTA TTTTATTCCT TGTGCTTTTG GTACCTTAAA ATTCTGCTAT
TCCATATTAT ACATTTAAAA TGGTTATCTC AATTACCATA TCTACATTAC CTCTTCATTA GGTCCATGAG CATCACTACA
ATAAAATCCC TAAATATTGA CTAATTTTAG TGGCAGAATA TAATTAGTCA CTATAGTGAC CAATTTAGAT ATCAATCTAT
AAACTAAAAA TTGGTAACTA AAATAGTTTA TAAATTGGTC TCCCTGGATT GGTCACTAAC ATTAATTACC AAGGTTTTGC
CTATCAAAAG AATTGGTTTC TAAATTAGTT TATAATAGAG GCCAATCTAG AGACCAATTC CTTTGGTGCT AAAACTTTGG
TAACTTATGT TAGTGACCAA CTTAGAGAGA CCAATTCACT ATAGTGACCA AGAGACCAAT TTATATACTA ATTTAATTAT
CAATAATTTT TAGTTTATAA ATTGATATCT AAATTGGTCA TTATAGTGAC TAATTATTTT TTGTCATTAA AATTGGTCAT
TATTTAGAAA TTTTATTGTA GTGATTATTA CGAAGTATGG TATACTTTTC TAGGCTAGAA CATTGTAACC TGGTTTGTAC
CATTCAATTT CACAATTTAT TTGATTTTTA TTGTTTTCAA AGTGATATGT AAATTGTATT TGATGTAAAT ATAACCATAC
AAAATGAAGT TAGCAACTTT GAAGAATCTC TATTCCTTAA GAAAATAACA AAACTACTAA GACGAGTTTT CTATGAATTT
TTTATCTCGC ACAATGCTCT CTAAGAATTA AATCCTCTTG TTTTCATTTA TATGCTTGTA TTGTTAATAT GAATATCAAC
ATTTTGTCAC ACACTGTACA TTACCCTAGC TTAGTGAAAT CACAAAGGAA TTGATAACAA GTATTCTTTT TATGGTATAG
TTGAAAGTTC CATTGCTCTA GCGTACTGAA TCAGATTACA TATAATTTCT GAATTTGATC ATAGTATGAG TTGTTTATGC
TTGTTCAATG TTTCCAGTCG TACCTGAGGG TGTCGCAACA GCTTCATACA GTGAACCAAG TGGTTGTTGG AGCTGTAATT
GGGTCCATTT TCTCTATTTT ATGGTACTGG CTGTGGAACG GTTTTATACT GGATGTTTTT GTATCTTCTC TATGGGTTAG
AATCGTTGTT GTTTTGGGGT CTGTGGGACT CTGCATAGGT TTTGTTTTAT TTACTATTCG TTATTGGCTT CAAGATGACT
AGAAGAACTT CAAGACGTGT AAAACATTTC AATGCGTTTT AATGTGTTAA TGACACATCT CATTTTCTTT CTTTCAAGAT
TAAGGTTTTA TGTTATGTTG CCTGGTTATG AAATGAAACA TTTTGCGCCA ATACTTTCTT GTAGTGATGC CTGGTTTTCT
ATCTCTTGCT TTCTTAGTTA GCTCTGTTGC TTTTCCTCGA AGCTTCTGGT TG

>Vigan.10G160000.01
CAGAGAATGA ACTGGTTTGT TGGACTTTCC GTGGAGCGTC TTCCTTCATA GATAATAAAT ACCACAGAGA AAGACTAGCT
TTTGTGATGT TGGACTGTAG CCCCATCTTC TCCCATAAAC TAGAGAGGAT CTTTTTCCTC TCACATGGCG GCGGCTTCTT
CAATTTGCCA AGCTCCCTTC ACTCTTTTTC AGGGGTCAAA TTGTCTTAAA CGAAGAAAAT TGAAAAACAC TTCACTTCCT
CGTTGTTTTT CTCCTTCAAG ATCCTTACTT TGTAGTGGAT TTCTTTCAAG GAGACCTCTT TTGAGAAGGA ACTCGTTCTG
GGTATCGAAA ACTATGGATG AATCCGTGAG AACTTCTGCT TTCAGAGATG GAGAAGGGGA TGAAAACATC CAAGTGTTTG
AACAGGAAGC TTTCATCGAT GGACCATCCC CGTTTCAGTC AAAGTTTTTG TCGCATGAGG TGGAATACAA GCTCAATAAA
CTGAGCAAGT GGATAGTAAC TGCCCTCTTT GGTGGTTTCA TTCTTTGGAG GCATGATGCA GAAGCCTTAT GGTTTACCTC
AGGGTCAATT TTGAATGCAT TGCTTTCTGT TTTGCTCAAA CGTATACTGA ATCAGGAACG ACCTTCAACC CTGAAATCTG
ACCCGGGAAT GCCATCTTCA CATGCACAAT CCATATTCTT TGCTGTCTTC TTTGTTATTT TGTCAGGCGT AGAATGGCTT
GGGCTAAATG TATTTACCAT TGCCATGAGT GGATTGGTCC TGACATTTGG TTCTTTCTTT TCGTACCTGA GGGTGTCGCA
ACAGCTTCAT ACAGTGAACC AAGTGGTTGT TGGAGCTGTA ATTGGGTCCA TTTTCTCTAT TTTATGGTAC TGGCTGTGGA
ACGGTTTTAT ACTGGATGTT TTTGTATCTT CTCTATGGGT TAGAATCGTT GTTGTTTTGG GGTCTGTGGG ACTCTGCATA
GGTTTTGTTT TATTTACTAT TCGTTATTGG CTTCAAGATG ACTAGAAGAA CTTCAAGACG TGTAAAACAT TTCAATGCGT
TTTAATGTGT TAATGACACA TCTCATTTTC TTTCTTTCAA GATTAAGGTT TTATGTTATG TTGCCTGGTT ATGAAATGAA
ACATTTTGCG CCAATACTTT CTTGTAGTGA TGCCTGGTTT TCTATCTCTT GCTTTCTTAG TTAGCTCTGT TGCTTTTCCT
CGAAGCTTCT GGTTG

>Vigan.10G160000.01
ATGGCGGCGG CTTCTTCAAT TTGCCAAGCT CCCTTCACTC TTTTTCAGGG GTCAAATTGT CTTAAACGAA GAAAATTGAA
AAACACTTCA CTTCCTCGTT GTTTTTCTCC TTCAAGATCC TTACTTTGTA GTGGATTTCT TTCAAGGAGA CCTCTTTTGA
GAAGGAACTC GTTCTGGGTA TCGAAAACTA TGGATGAATC CGTGAGAACT TCTGCTTTCA GAGATGGAGA AGGGGATGAA
AACATCCAAG TGTTTGAACA GGAAGCTTTC ATCGATGGAC CATCCCCGTT TCAGTCAAAG TTTTTGTCGC ATGAGGTGGA
ATACAAGCTC AATAAACTGA GCAAGTGGAT AGTAACTGCC CTCTTTGGTG GTTTCATTCT TTGGAGGCAT GATGCAGAAG
CCTTATGGTT TACCTCAGGG TCAATTTTGA ATGCATTGCT TTCTGTTTTG CTCAAACGTA TACTGAATCA GGAACGACCT
TCAACCCTGA AATCTGACCC GGGAATGCCA TCTTCACATG CACAATCCAT ATTCTTTGCT GTCTTCTTTG TTATTTTGTC
AGGCGTAGAA TGGCTTGGGC TAAATGTATT TACCATTGCC ATGAGTGGAT TGGTCCTGAC ATTTGGTTCT TTCTTTTCGT
ACCTGAGGGT GTCGCAACAG CTTCATACAG TGAACCAAGT GGTTGTTGGA GCTGTAATTG GGTCCATTTT CTCTATTTTA
TGGTACTGGC TGTGGAACGG TTTTATACTG GATGTTTTTG TATCTTCTCT ATGGGTTAGA ATCGTTGTTG TTTTGGGGTC
TGTGGGACTC TGCATAGGTT TTGTTTTATT TACTATTCGT TATTGGCTTC AAGATGACTA G

>Vigan.10G160000.01
MAAASSICQA PFTLFQGSNC LKRRKLKNTS LPRCFSPSRS LLCSGFLSRR PLLRRNSFWV SKTMDESVRT SAFRDGEGDE
NIQVFEQEAF IDGPSPFQSK FLSHEVEYKL NKLSKWIVTA LFGGFILWRH DAEALWFTSG SILNALLSVL LKRILNQERP
STLKSDPGMP SSHAQSIFFA VFFVILSGVE WLGLNVFTIA MSGLVLTFGS FFSYLRVSQQ LHTVNQVVVG AVIGSIFSIL
WYWLWNGFIL DVFVSSLWVR IVVVLGSVGL CIGFVLFTIR YWLQDD*