GBrowse Details

Vigan.10G157800.01

Basic Information:
Name: Vigan.10G157800.01
Multiple alignment
Variant Information
Position: Chr10:21626443..21628777 (- strand)
Length: 2335
Functional Information:
Description: Similar to protein RTE1-HOMOLOG-like. [XP_004512083.1, Cicer arietinum]
InterPro: Protein of unknown function DUF778 (IPR008496)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.00,2.67,2.46,3.89,4.03,5.61,4.80,4.98
Arabidopsis thaliana homolog: AT3G51040.1
Automatic updates:
Name: NM_001248576 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527909 (LOC100527909), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001252770 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transmembrane protein 222-like (LOC100786957), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:21626443..21627038 (- strand)
Length: 596
Type: three_prime_UTR
Position: Chr10:21627039..21627461 (- strand)
Length: 423
Type: CDS
Position: Chr10:21627782..21628054 (- strand)
Length: 273
Type: CDS
Position: Chr10:21628055..21628777 (- strand)
Length: 723
Type: five_prime_UTR

>Vigan.10G157800.01 class=Sequence position=Chr10:21626443..21628777 (- strand)
CGACGGTAGA AAAAAGAGTT TGAATAATAT TTGCTTCACA CTCTAACAAG GACGTGAGAT GCACAACAAC AATAATCCCA
ATAAGCTGAA AAAGTACAGA GTTAAGAAGA TAATTAGTTT ATACACACTG CGTTTACTAG GCTCTGTTGC ACAGTGTGCG
GGCAGGGTAC AGATTCTTCT GTCTGCTATA CAAGGTGATT GGATCGGATC CCTTTCTCTT ATTTCTCTTA TATGTTATGT
CTAGACTATA ATTCATGAGT ATGCTAGCCT AGGGTTTCTT CTGCTTTGTA ATTTCATCAT GAATCGCACA TATTGTTTAT
GTCAGTTTAG GAATCATTCT CCCATCAATT CATTTCGCGA AACCGTACCT AAATCTTGAA TTTCGAAACC CAAATCTGTC
TAGGAAACGA TGTAGCAGTC AAACTAGGCT TAGTGCACTG CATCGTGGTT GTTCTTGAAA CCAGAAATTG AGGACGTGAG
ACATACAACA TTTGAGTTCC ATCGTTGCTT CACGTGAATC CTGAATTTGG AAATATTAGA CACTACACCT GCTTCTTAAT
GATTTTTTTG GCTTTAGATT CAAATAATAC ACAGACAAAC ATATATATGT ATTTATGTAG TATACGCCTT TGGTTATAAA
CTTGTTTGAT GTCATGACTT TCGGTTTTTT AATGGATTGT TGTGTATTGT CAAGTCAGTA ATATAGTTTT ACCGACTTTT
ACAATGGGAG AAGAGTTGGA TACTGAACAA CAGGAGGAGA TGATGGAAAG AAGTTATTCG CAAACTATGC AAATTGATCC
CAAAAGGGCT CGATTTCCAT GCTCTATTGT GTGGTCACCA CTTCCTGTGA TATCGTGGTT CATTCCTTGC ATCGGGCACA
TTGGCATCTG CAGAGAGGAT GGAGTAATAT TGGATTTTGC AGGGCCTAAT TTTGTGTGTG TAGACCATTT TGCATTTGGA
GCCGCCACTC GCTATTTTCA GATTCCCAAA GAAAAGGTAT ATTCTATTGT TTAAGTCTTT CTTTGTGTCA AGAGAACATA
AAAATGGTCT ACTTCCCCTT AATAAACAAA TTGTCCTAAA CTAAAGCTGG TACAAATCAA GAAACGGAAA GTAGGACCAT
ATTATGAGAC TCTTGTTTTT TTTTTTCTAA CAATTTTGAG GCTAACTTCC TTTTGGGGTT TTATTTTTTC ATCACGCTGT
GATATATACT AAATGGAAGC TGTACAAAGT TATATTTTGC AGGAACTTGA TTTTAGCTCG TTGGTTTTCT GTTCATGTAT
TGCTTCTCAA GTGTTGTTTA AAAAAATTGT TGGCAGTGTT GCATACCTTT GGGCCAGTCT GCGTACAATG GTGAGGAAGA
CTACACGCAG GGAGAAAATA TAGTTGATTT AAGGACTTGG GATGATGCAC TGAGGAAAAG CACTCAAGAA TTCCAGCATC
GATCTTACAA TCTCTTTACC TGCAACTGCC ACTCGTTTGT TGTCAATAAT TTAAACAGGT TGGATTTCTT GTCTGGTGGA
TGGAATGTGG TGAACCTTGC AATTTTCATT TTATTCAATG GTCGTTGGGT CAGCAAAGCA TCTATGCTTC GATCTATCAT
ACCATTTGTG GTTGTATTTT TTCTTGGAGT CGCATTCGGG GGCTTCACTT TCTTGAAGTT TTGGTTCTTT TTCACTTCCA
TTCTTATTGG TTGGTTCCTG CTTGGTACTT ATTGTTTCAA GAACCTGATT CAGTTGTAGT ATCCGGTTCT CTGGCTCTAC
TTCGTATACA AGTGTAATAC GTGCTATTTT TGGTGAAACA TGGCTAATTA ATCATATACT GTGTTCAGAT TAATTTTATT
GTCAAAGGCT TGTTACTTTA GTAGGACTTG TTCTTCTATT GGTATGATTT TGTTAACTAA TTGAATTGCA GCATCCTGCC
CCACATCTTA TTGATGCTAA GACATTCTGT CCTACGTCTC TGTAATAGAT TGAGGTTGGT ATAAATGGAC TTTGATTGGC
GTTGGTCATT CACAAACTGC GTTTTACGTT TGGAAATACG AAGGGTGCTG CCATCCTATT CATTGAGTTT TGAATTGGAC
TTGGATATTT TTTTAGTAAT CAAGCTATTG TGACTTTCAC GAACATGAAA AAGCAGTGAG CACAAGTCTG CCACATAAAA
AAGACAACAC TTCAACATTT CGCAGGAATA CAAGAGTAGT GGCATGTGCA CCCTTGATTG CAGCACCTAC GGAGCTTTTT
CTTATAGCTT TTATTTGCAC TTGTTTTGTT AAATCACAAT GTCAGTAGCG AGAACATAGT CTCTGTTGTG CGAAATTAAA
CATTGCTATC TTGTA

>Vigan.10G157800.01
CGACGGTAGA AAAAAGAGTT TGAATAATAT TTGCTTCACA CTCTAACAAG GACGTGAGAT GCACAACAAC AATAATCCCA
ATAAGCTGAA AAAGTACAGA GTTAAGAAGA TAATTAGTTT ATACACACTG CGTTTACTAG GCTCTGTTGC ACAGTGTGCG
GGCAGGGTAC AGATTCTTCT GTCTGCTATA CAAGGTGATT GGATCGGATC CCTTTCTCTT ATTTCTCTTA TATGTTATGT
CTAGACTATA ATTCATGAGT ATGCTAGCCT AGGGTTTCTT CTGCTTTGTA ATTTCATCAT GAATCGCACA TATTGTTTAT
GTCAGTTTAG GAATCATTCT CCCATCAATT CATTTCGCGA AACCGTACCT AAATCTTGAA TTTCGAAACC CAAATCTGTC
TAGGAAACGA TGTAGCAGTC AAACTAGGCT TAGTGCACTG CATCGTGGTT GTTCTTGAAA CCAGAAATTG AGGACGTGAG
ACATACAACA TTTGAGTTCC ATCGTTGCTT CACGTGAATC CTGAATTTGG AAATATTAGA CACTACACCT GCTTCTTAAT
GATTTTTTTG GCTTTAGATT CAAATAATAC ACAGACAAAC ATATATATGT ATTTATGTAG TATACGCCTT TGGTTATAAA
CTTGTTTGAT GTCATGACTT TCGGTTTTTT AATGGATTGT TGTGTATTGT CAAGTCAGTA ATATAGTTTT ACCGACTTTT
ACAATGGGAG AAGAGTTGGA TACTGAACAA CAGGAGGAGA TGATGGAAAG AAGTTATTCG CAAACTATGC AAATTGATCC
CAAAAGGGCT CGATTTCCAT GCTCTATTGT GTGGTCACCA CTTCCTGTGA TATCGTGGTT CATTCCTTGC ATCGGGCACA
TTGGCATCTG CAGAGAGGAT GGAGTAATAT TGGATTTTGC AGGGCCTAAT TTTGTGTGTG TAGACCATTT TGCATTTGGA
GCCGCCACTC GCTATTTTCA GATTCCCAAA GAAAAGTGTT GCATACCTTT GGGCCAGTCT GCGTACAATG GTGAGGAAGA
CTACACGCAG GGAGAAAATA TAGTTGATTT AAGGACTTGG GATGATGCAC TGAGGAAAAG CACTCAAGAA TTCCAGCATC
GATCTTACAA TCTCTTTACC TGCAACTGCC ACTCGTTTGT TGTCAATAAT TTAAACAGGT TGGATTTCTT GTCTGGTGGA
TGGAATGTGG TGAACCTTGC AATTTTCATT TTATTCAATG GTCGTTGGGT CAGCAAAGCA TCTATGCTTC GATCTATCAT
ACCATTTGTG GTTGTATTTT TTCTTGGAGT CGCATTCGGG GGCTTCACTT TCTTGAAGTT TTGGTTCTTT TTCACTTCCA
TTCTTATTGG TTGGTTCCTG CTTGGTACTT ATTGTTTCAA GAACCTGATT CAGTTGTAGT ATCCGGTTCT CTGGCTCTAC
TTCGTATACA AGTGTAATAC GTGCTATTTT TGGTGAAACA TGGCTAATTA ATCATATACT GTGTTCAGAT TAATTTTATT
GTCAAAGGCT TGTTACTTTA GTAGGACTTG TTCTTCTATT GGTATGATTT TGTTAACTAA TTGAATTGCA GCATCCTGCC
CCACATCTTA TTGATGCTAA GACATTCTGT CCTACGTCTC TGTAATAGAT TGAGGTTGGT ATAAATGGAC TTTGATTGGC
GTTGGTCATT CACAAACTGC GTTTTACGTT TGGAAATACG AAGGGTGCTG CCATCCTATT CATTGAGTTT TGAATTGGAC
TTGGATATTT TTTTAGTAAT CAAGCTATTG TGACTTTCAC GAACATGAAA AAGCAGTGAG CACAAGTCTG CCACATAAAA
AAGACAACAC TTCAACATTT CGCAGGAATA CAAGAGTAGT GGCATGTGCA CCCTTGATTG CAGCACCTAC GGAGCTTTTT
CTTATAGCTT TTATTTGCAC TTGTTTTGTT AAATCACAAT GTCAGTAGCG AGAACATAGT CTCTGTTGTG CGAAATTAAA
CATTGCTATC TTGTA

>Vigan.10G157800.01
ATGGGAGAAG AGTTGGATAC TGAACAACAG GAGGAGATGA TGGAAAGAAG TTATTCGCAA ACTATGCAAA TTGATCCCAA
AAGGGCTCGA TTTCCATGCT CTATTGTGTG GTCACCACTT CCTGTGATAT CGTGGTTCAT TCCTTGCATC GGGCACATTG
GCATCTGCAG AGAGGATGGA GTAATATTGG ATTTTGCAGG GCCTAATTTT GTGTGTGTAG ACCATTTTGC ATTTGGAGCC
GCCACTCGCT ATTTTCAGAT TCCCAAAGAA AAGTGTTGCA TACCTTTGGG CCAGTCTGCG TACAATGGTG AGGAAGACTA
CACGCAGGGA GAAAATATAG TTGATTTAAG GACTTGGGAT GATGCACTGA GGAAAAGCAC TCAAGAATTC CAGCATCGAT
CTTACAATCT CTTTACCTGC AACTGCCACT CGTTTGTTGT CAATAATTTA AACAGGTTGG ATTTCTTGTC TGGTGGATGG
AATGTGGTGA ACCTTGCAAT TTTCATTTTA TTCAATGGTC GTTGGGTCAG CAAAGCATCT ATGCTTCGAT CTATCATACC
ATTTGTGGTT GTATTTTTTC TTGGAGTCGC ATTCGGGGGC TTCACTTTCT TGAAGTTTTG GTTCTTTTTC ACTTCCATTC
TTATTGGTTG GTTCCTGCTT GGTACTTATT GTTTCAAGAA CCTGATTCAG TTGTAG

>Vigan.10G157800.01
MGEELDTEQQ EEMMERSYSQ TMQIDPKRAR FPCSIVWSPL PVISWFIPCI GHIGICREDG VILDFAGPNF VCVDHFAFGA
ATRYFQIPKE KCCIPLGQSA YNGEEDYTQG ENIVDLRTWD DALRKSTQEF QHRSYNLFTC NCHSFVVNNL NRLDFLSGGW
NVVNLAIFIL FNGRWVSKAS MLRSIIPFVV VFFLGVAFGG FTFLKFWFFF TSILIGWFLL GTYCFKNLIQ L*