GBrowse Details

Vigan.10G154900.01

Basic Information:
Name: Vigan.10G154900.01
Multiple alignment
Variant Information
Position: Chr10:21359232..21361162 (+ strand)
Length: 1931
Functional Information:
Description: Similar to Uncharacterized protein. [V7CKW8, Phaseolus vulgaris]
GO: Biological Process: ATP hydrolysis coupled proton transport (GO:0015991)
Cellular Component: proton-transporting two-sector ATPase complex, proton-transporting domain (GO:0033177)
Cellular Component: proton-transporting V-type ATPase, V0 domain (GO:0033179)
Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078)
InterPro: V-ATPase proteolipid subunit (IPR000245)
V-ATPase proteolipid subunit C-like domain (IPR002379)
V-ATPase proteolipid subunit C, eukaryotic (IPR011555)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:236.71,140.01,57.58,38.60,91.67,173.55,110.64,67.89
Automatic updates:
Name: AF022925 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata adenosine triphosphatase mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Name: NM_001289251 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max V-type proton ATPase 16 kDa proteolipid subunit-like (LOC100815182), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349783 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP synthase subunit C superfamily protein (LOC100500014), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:21359232..21359449 (+ strand)
Length: 218
Type: five_prime_UTR
Position: Chr10:21359450..21359811 (+ strand)
Length: 362
Type: CDS
Position: Chr10:21360858..21360990 (+ strand)
Length: 133
Type: CDS
Position: Chr10:21360991..21361162 (+ strand)
Length: 172
Type: three_prime_UTR

>Vigan.10G154900.01 class=Sequence position=Chr10:21359232..21361162 (+ strand)
GAATGATATA AAAGGGATTA TTTAGGTTGT TTCTAAAATA ATATAGTTTG ATTACATGTG GCGTGAGTGA TAATGACAGA
GGTGGCAGAG AGGGTCCGTT CAAGAAACTT CCGAGAGGAA GAGGGAAGAA GAGAGGGCGA AAAAGCAATA ATAACAGTAA
TAGCAACAGA TCTCACTGTC GTCTGCCCGA AGCCAAAATC CAGAGAAAGA AAGAAAGAAT GGTTGATTTC AGCGGCGATG
AAACTGCCCC CTTCTTTGGC TTCCTGGGCG CCGCGGCGGC CCTCGTTTTC TCCTGCATGG GGGCGGCGTA CGGCACGGCG
AAGAGCGGCG TCGGTGTTGC CTCGATGGGC GTGATGAGGC CGGAGCTGGT GATGAAATCG ATTGTGCCGG TTGTCATGGC
GGGAGTGCTT GGCATCTACG GCTTGATCAT CGCAGTGATC ATCAGCACGG GAATTAACCC TAAGGCCAAA TCGTACTATC
TATTCGATGG CTACGCTCAT CTGTCTTCTG GTCTTGCTTG TGGTCTCGCT GGTCTCTCCG CTGGCATGGC CATTGGCATC
GTTGGCGACG CCGGTGTTAG GTACACTATT ATCATTCTCT ACTCTATTTT CGTTACTTGT TCAATTTCTT AGGTATTCGC
TTCTATTACT TCACTTTGGT TGTTTCATGA GTTTTGTACT TGTTTTGAAT TTGTTATGTC AACTTCAATG GTAGATGACC
TTCTGTGTGC AGAATTGAAT GCAAAATGAT AATTTATTCA AGAATTAGGC AGAGTATGCG TGTTGACATA TAATTCGGAT
GCTTGTGCGG GATGCTTTGT GTATTTGATT TTGGTTCAAT ATGAGTTTGA AGTAATCTCT GGGAACTTTT CTTTTTATCT
CAAGGGCCTA TCTGATGATT ACATGAGCAT TTGTTAAGTG TTTTAGAGAG TTTGTGAAAA TAGGTTTTTA TTTTTTTGTT
CGTCTGTTGC TTTTTGCTTA TTTAATCAGC TGGGCAGGAT AGCGTATGAA AACAGCTTAC AACTTGTTTA AAAATAGTTT
AACCCAATTT CTTTTTGATA ATGGAAACAA CTTAAACGTA TGTAAGCATT TATGTATGGT GCTTGATGAA GTTGTTTATT
CAAAGGCATC GATTTCTCAA CCCAATGGAA AAACTACTTT TTGTTCTGTT TTTTCTCTTG TAGTCTAACA TGCATTTTGG
GGCATAATAA ATTTTAATTA ATTAATAATG AAAAAAATAT TTACTGTGAG GTCATGTTTC TGTTCTTAAA CATGGTTGAG
TCCTTCAAAT TTGTATCCGA ACATGCTGGT AGTTAGTTTG GGCCACAGCA GCAAACTTCT TTATAGATAA AATTGATTTT
CAATTTGTTC TGTGTAGTCT ACAATGAAGA AACAGCTATT ATGGCATGAT ACAAGGCACA ATTTGGGATA TACATCAGTA
CTTGTCTATT GTCGATTGAA TTTGAAGTCC AAAAATTATC TAATGCTAGT ATCACCATTG CTGCTAGTGC TTTCAATGTT
TTGACTGCAT GTTCTCTGAG AATGTTTCAC TCCTACCGGA TAAATTCTTA TAACCTCTAT TGCAATTTAT TGAATTTGCC
ATGCTGAAAA TGAACTGTTC TTGTAGAGCA AATGCCCAAC AGCCAAAGCT TTTTGTTGGG ATGATTTTGA TTCTCATCTT
TGCCGAGGCA TTGGCGTTGT ATGGTCTTAT TGTTGGCATC ATCCTCTCTT CCCGAGCTGG CCAATCCAGA GCTGATTAGT
ATGGAATTTC ACGCAGCTTA GAGCACATAG AACCATGGAT TGGACGTTGA ATGTTGCGAA GATCTAGGCA TTGGTAAGAG
TGTTGCTTTA TGATGCTCTT CATTCAGGTT ATTCAGAAAT AAAACGTCCA AACGATTTCT TTGGCCATTT ATTGTATTTA
ATTATGCTAT C

>Vigan.10G154900.01
GAATGATATA AAAGGGATTA TTTAGGTTGT TTCTAAAATA ATATAGTTTG ATTACATGTG GCGTGAGTGA TAATGACAGA
GGTGGCAGAG AGGGTCCGTT CAAGAAACTT CCGAGAGGAA GAGGGAAGAA GAGAGGGCGA AAAAGCAATA ATAACAGTAA
TAGCAACAGA TCTCACTGTC GTCTGCCCGA AGCCAAAATC CAGAGAAAGA AAGAAAGAAT GGTTGATTTC AGCGGCGATG
AAACTGCCCC CTTCTTTGGC TTCCTGGGCG CCGCGGCGGC CCTCGTTTTC TCCTGCATGG GGGCGGCGTA CGGCACGGCG
AAGAGCGGCG TCGGTGTTGC CTCGATGGGC GTGATGAGGC CGGAGCTGGT GATGAAATCG ATTGTGCCGG TTGTCATGGC
GGGAGTGCTT GGCATCTACG GCTTGATCAT CGCAGTGATC ATCAGCACGG GAATTAACCC TAAGGCCAAA TCGTACTATC
TATTCGATGG CTACGCTCAT CTGTCTTCTG GTCTTGCTTG TGGTCTCGCT GGTCTCTCCG CTGGCATGGC CATTGGCATC
GTTGGCGACG CCGGTGTTAG AGCAAATGCC CAACAGCCAA AGCTTTTTGT TGGGATGATT TTGATTCTCA TCTTTGCCGA
GGCATTGGCG TTGTATGGTC TTATTGTTGG CATCATCCTC TCTTCCCGAG CTGGCCAATC CAGAGCTGAT TAGTATGGAA
TTTCACGCAG CTTAGAGCAC ATAGAACCAT GGATTGGACG TTGAATGTTG CGAAGATCTA GGCATTGGTA AGAGTGTTGC
TTTATGATGC TCTTCATTCA GGTTATTCAG AAATAAAACG TCCAAACGAT TTCTTTGGCC ATTTATTGTA TTTAATTATG
CTATC

>Vigan.10G154900.01
ATGGTTGATT TCAGCGGCGA TGAAACTGCC CCCTTCTTTG GCTTCCTGGG CGCCGCGGCG GCCCTCGTTT TCTCCTGCAT
GGGGGCGGCG TACGGCACGG CGAAGAGCGG CGTCGGTGTT GCCTCGATGG GCGTGATGAG GCCGGAGCTG GTGATGAAAT
CGATTGTGCC GGTTGTCATG GCGGGAGTGC TTGGCATCTA CGGCTTGATC ATCGCAGTGA TCATCAGCAC GGGAATTAAC
CCTAAGGCCA AATCGTACTA TCTATTCGAT GGCTACGCTC ATCTGTCTTC TGGTCTTGCT TGTGGTCTCG CTGGTCTCTC
CGCTGGCATG GCCATTGGCA TCGTTGGCGA CGCCGGTGTT AGAGCAAATG CCCAACAGCC AAAGCTTTTT GTTGGGATGA
TTTTGATTCT CATCTTTGCC GAGGCATTGG CGTTGTATGG TCTTATTGTT GGCATCATCC TCTCTTCCCG AGCTGGCCAA
TCCAGAGCTG ATTAG

>Vigan.10G154900.01
MVDFSGDETA PFFGFLGAAA ALVFSCMGAA YGTAKSGVGV ASMGVMRPEL VMKSIVPVVM AGVLGIYGLI IAVIISTGIN
PKAKSYYLFD GYAHLSSGLA CGLAGLSAGM AIGIVGDAGV RANAQQPKLF VGMILILIFA EALALYGLIV GIILSSRAGQ
SRAD*