GBrowse Details

Vigan.10G149400.01

Basic Information:
Name: Vigan.10G149400.01
Multiple alignment
Variant Information
Position: Chr10:20810795..20813812 (- strand)
Length: 3018
Functional Information:
Description: Similar to SKP1-like protein 1A-like. [XP_003517160.1, Glycine max]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
InterPro: SKP1 component (IPR001232)
BTB/POZ fold (IPR011333)
SKP1 component, dimerisation (IPR016072)
SKP1 component, POZ domain (IPR016073)
E3 ubiquitin ligase, SCF complex, Skp subunit (IPR016897)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1428.55,748.17,186.05,159.44,225.47,584.53,196.59,174.51
Arabidopsis thaliana homolog: AT5G42190.1
Automatic updates:
Name: NM_001249000 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SKP1-like protein (LOC100527683), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:20810795..20811313 (- strand)
Length: 519
Type: three_prime_UTR
Position: Chr10:20811314..20811487 (- strand)
Length: 174
Type: CDS
Position: Chr10:20813288..20813581 (- strand)
Length: 294
Type: CDS
Position: Chr10:20813582..20813812 (- strand)
Length: 231
Type: five_prime_UTR

>Vigan.10G149400.01 class=Sequence position=Chr10:20810795..20813812 (- strand)
AAAAAAATTA AGAGTCGTGT GTGTAACGTT TATTTTTTCT ATAGATCTTA CGGATAAATC AGACTATTCG TAACCAGAGA
GAGAGAGAGT TGGTATCCTT GCATTATAAA TAAAGCCCGA GTGAGTTATT TGCCTTTTCA TCTCAATCAG AGAAAAGTTA
GGGTTCGTGA CTTTCCCTTT TCCTTCGTTT CTTTCGTTCG GAATCATAAT CATCATCGTC GACATATCAT CATGTCATCG
GCGAGGAAGA TCACCCTGAA GAGTTCCGAC GGGGAGGCGT TCGAGGTGGA CGAGGCGGTG GCGCTGGAGT CGCAGACGAT
AAAGCACATG ATTGAGGACG ACTGCGCCGA CAGCGGCATC CCTCTCCCCA ACGTTACCAG CAAGATCCTC GCTAAAGTCA
TCGAGTACTG CAAAAAACAT GTCGATGCCG CCAATCCCGA CGACAAACCT TCTGAGGAAG ATCTCAAGGC CTGGGACGCG
GATTTCGTCA AGGTCGACCA GGCCACGCTC TTCGATCTCA TCCTGGTCAG TTAATCTTTT TCAAAATCTT TTAAATTCCA
TCCCTCGATT TTAATTACAA ATCATACTAG ATAGTCTCTT CAATGTTGAA AAATCTCACA ACTTAGGCTC TACATGTATG
TTTGTATATT AGTAAATATA TCACATCTCA CAAATTAGTA CCTTTGTATG TTGGCAAAAT ATATCAATGC AAAGACTAAA
TTGATTGGTA TTTAATATTC GGGATACTGT TAAAGCAATT TTATTACTAA ATAATTATTA TTTGATTATT TAGGAGCTAG
GATAATACTT AGTTAACTGA TTGATGATTT ATTCTTCTCG TTTATGCGCT ATGGTGTTCT TCCATTTATG GAGCTGCTGT
TTAATGATTC GGAATCTTTT CATTTTTCGT TTTTTCGTGT GTTTGTTATT ACATGCTGTG ATCCGTGGTG ATGGTAGTTG
GTTCTTCGAG TTGTGTGTAG CTGCAAACTT GCTAAGTGCC AATTATGTGA CCTGATGTTT TCTATTGACC TTATCTGAGA
TTTTAGATTA TTTTGATGCA GTGTTAGGGG TTGCTGTTTG GTTGTGTTTG TATTGGCTCG CATGAAAAGG CATTGTTTAT
ATATAAGGGT GTGTAAGGTT GTCTAATTCC GTAATTATTA TCTCTTGAAC TCTTGCGAGT TTACTATATT GGGTAGAGAA
AACTGAGTTA ACTCCTTATC AAACCCTTTT CTGACTGAAC TTGGCTAAAC TTTCGTGAAC TTGCTTAAAC CCTCGCTTCA
AGATGTGAGT CAACGAGTTT GAAATTAATG TTATTAGTAC CCAAAATATT TAAAGAATTT AGTTGTTATG TATGTTTAAT
CTTAGTTACC ACTAATGTAC TATCATACTT ATTGTGTCAT TAATAGACTA ATATTACTAT TTATAATAGG CAAACTCTTA
ATGAGTTTAG GAGCCACATT TAAGAGTCAA GTTTATGGAA TTTCTACGAG TTTATTTAGC TTTTCTTGCC GCACTGATAT
GTCTTGCTAC CTGGAAGTAA TTTATCTCTC TAAAACATTA TCAGGGAACC AAATTTGTGC GTTTGTAATT TATAGAGTTG
CACTGTTGGC ATTCGTTATT CCTTAAGATT GTTGTGTACC CATTAAATTT TGGGAATTTT CATTGAGATT CATTCAATGC
TGTAGTTTCT TGTGCATGAC TTCATATTCA TCTGTAAATT CTTCATCAAT TGGTGAGGTC TCCTGCATTT ATTTCTAAAA
TGAAACTTTC GAGAAATAAA ATATATACCT TTTAATAGTT TGCAAATTGC AATGCCAATC ACAGAAACCC ATGCTTCTGA
ATAAACTTTC CTTGAGTACG CATGTGATTT TTCAAGTTGT TCAACGACCT CTACCCCCTA ATTCTTCTGA GTTTCGAATG
GTTCTCTAGA TTTTCCGTTT TTGATTTTTA ATAATTCACT TCATGAAAGT AGACTTTCTT TCCATTCATT TCAAGATGTG
TATGATGCTT TCCCCAACCA AACATGAATC TTTTGATTCA TTTGGCACTC ACTCAATTCC TTATAGGAAA TTTCCCATTT
TCTATGTAGT GTACATATCC TCTTATCTCT ATTAAAAGTG AAACAATAAC TTGTTAAAAT TTTCTTGAGC GCAAGATAGC
ATGATCAAGT TAATTTTAGC TTTTTGAAAA AGTTAGTTTA AAATTTTCGT TTTATTTTAA TCTCATAGAA GTAGTTTATG
AAGAATCTCG TCGCAATATA TACTCTGTTT ATTTATTAGG CGAAGTCTAC ACTGTTACGT ATTAATGAGA CAATTTTCCT
TTTAGGCTGC GAACTACCTG AACATCAAGA GCCTGCTGGA TCTTACATGC CAGACTGTAG CAGACATGAT CAAGGGGAAG
ACTCCAGAGG AAATTCGCAA GACCTTTAAC ATTAAGAATG ACTTCACCCC TGAGGAAGAA GAGGAAGTTC GTCGGGAAAA
TCAATGGGCA TTTGAATGAT TTTGTTAAGC CATAAAATCT GAATCAAAGA TCTGCCATGT GGTTTTATGC TATGCTTGTC
TGTTTTTCAA AGATCTTCCT TGTAGATTTA CCTATGCTAT ATACTTGTTT GTTTTCTATT TCAGACTATT TATGTTGACT
GTGTTCACGA GTCAGAATTA TCATCCTACA TGAACGTTAA TAGCGCTTGA ATTGTAATTA ATAGTTGTGA TGAGGGGAAG
CGATTATTCT GACACGAGGG TTATTGAGTT CAATAATAGC CATTCTTTGG CTCCTAAATT ATCATCACGT ATATTACATG
GTAATAAGTG TAAGCACCTA AATGGTGCCA CAGTGCTAAG ACCACTGTAT GCTTACTAAT ATGTAAAGGT TTGGGGATAC
CATTTCATGA TTGTCCTTAC CAAACAGTTT CTTATACTGC TATTCTTGAA TCCAAAAAGC AGCAAAGGAC ATTCAGAATA
TCAAACACTC ACTCATGACC GAATTGTAGT TCTTGATCAC TACTTTTAAA TACTAGAG

>Vigan.10G149400.01
AAAAAAATTA AGAGTCGTGT GTGTAACGTT TATTTTTTCT ATAGATCTTA CGGATAAATC AGACTATTCG TAACCAGAGA
GAGAGAGAGT TGGTATCCTT GCATTATAAA TAAAGCCCGA GTGAGTTATT TGCCTTTTCA TCTCAATCAG AGAAAAGTTA
GGGTTCGTGA CTTTCCCTTT TCCTTCGTTT CTTTCGTTCG GAATCATAAT CATCATCGTC GACATATCAT CATGTCATCG
GCGAGGAAGA TCACCCTGAA GAGTTCCGAC GGGGAGGCGT TCGAGGTGGA CGAGGCGGTG GCGCTGGAGT CGCAGACGAT
AAAGCACATG ATTGAGGACG ACTGCGCCGA CAGCGGCATC CCTCTCCCCA ACGTTACCAG CAAGATCCTC GCTAAAGTCA
TCGAGTACTG CAAAAAACAT GTCGATGCCG CCAATCCCGA CGACAAACCT TCTGAGGAAG ATCTCAAGGC CTGGGACGCG
GATTTCGTCA AGGTCGACCA GGCCACGCTC TTCGATCTCA TCCTGGCTGC GAACTACCTG AACATCAAGA GCCTGCTGGA
TCTTACATGC CAGACTGTAG CAGACATGAT CAAGGGGAAG ACTCCAGAGG AAATTCGCAA GACCTTTAAC ATTAAGAATG
ACTTCACCCC TGAGGAAGAA GAGGAAGTTC GTCGGGAAAA TCAATGGGCA TTTGAATGAT TTTGTTAAGC CATAAAATCT
GAATCAAAGA TCTGCCATGT GGTTTTATGC TATGCTTGTC TGTTTTTCAA AGATCTTCCT TGTAGATTTA CCTATGCTAT
ATACTTGTTT GTTTTCTATT TCAGACTATT TATGTTGACT GTGTTCACGA GTCAGAATTA TCATCCTACA TGAACGTTAA
TAGCGCTTGA ATTGTAATTA ATAGTTGTGA TGAGGGGAAG CGATTATTCT GACACGAGGG TTATTGAGTT CAATAATAGC
CATTCTTTGG CTCCTAAATT ATCATCACGT ATATTACATG GTAATAAGTG TAAGCACCTA AATGGTGCCA CAGTGCTAAG
ACCACTGTAT GCTTACTAAT ATGTAAAGGT TTGGGGATAC CATTTCATGA TTGTCCTTAC CAAACAGTTT CTTATACTGC
TATTCTTGAA TCCAAAAAGC AGCAAAGGAC ATTCAGAATA TCAAACACTC ACTCATGACC GAATTGTAGT TCTTGATCAC
TACTTTTAAA TACTAGAG

>Vigan.10G149400.01
ATGTCATCGG CGAGGAAGAT CACCCTGAAG AGTTCCGACG GGGAGGCGTT CGAGGTGGAC GAGGCGGTGG CGCTGGAGTC
GCAGACGATA AAGCACATGA TTGAGGACGA CTGCGCCGAC AGCGGCATCC CTCTCCCCAA CGTTACCAGC AAGATCCTCG
CTAAAGTCAT CGAGTACTGC AAAAAACATG TCGATGCCGC CAATCCCGAC GACAAACCTT CTGAGGAAGA TCTCAAGGCC
TGGGACGCGG ATTTCGTCAA GGTCGACCAG GCCACGCTCT TCGATCTCAT CCTGGCTGCG AACTACCTGA ACATCAAGAG
CCTGCTGGAT CTTACATGCC AGACTGTAGC AGACATGATC AAGGGGAAGA CTCCAGAGGA AATTCGCAAG ACCTTTAACA
TTAAGAATGA CTTCACCCCT GAGGAAGAAG AGGAAGTTCG TCGGGAAAAT CAATGGGCAT TTGAATGA

>Vigan.10G149400.01
MSSARKITLK SSDGEAFEVD EAVALESQTI KHMIEDDCAD SGIPLPNVTS KILAKVIEYC KKHVDAANPD DKPSEEDLKA
WDADFVKVDQ ATLFDLILAA NYLNIKSLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE*