VIGGS:GBrowse

Vigan.10G126000.01

Basic Information:

Name:	Vigan.10G126000.01 Multiple alignment Variant Information
Position:	Chr10:18178037..18180093 (- strand)
Length:	2057

Functional Information:

Description:	Similar to Uncharacterized protein. [I1J838, Glycine max]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	Ankyrin repeat (IPR002110)
InterPro:	Ankyrin repeat-containing domain (IPR020683)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:21.21,34.97,20.62,26.54,24.88,29.33,17.70,25.27
Arabidopsis thaliana homolog:	AT4G19150.1

Automatic updates:

Name:	NM_001317439 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative ankyrin repeat protein RF_0381 (LOC100812821), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr10:18178037..18178199 (- strand)
Length:	163
Type:	three_prime_UTR

Position:	Chr10:18178200..18178818 (- strand)
Length:	619
Type:	CDS

Position:	Chr10:18179834..18179970 (- strand)
Length:	137
Type:	CDS

Position:	Chr10:18179971..18180093 (- strand)
Length:	123
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.10G126000.01 class=Sequence position=Chr10:18178037..18180093 (- strand)
ATTGAAAACT TTAAAATTTT TGAAGACACC AGGAAAAGAC AGAAAATAGA GAAGGGTTGC GGAAGTAGTG TTAAAAATTC
AGAATTGACA TAACAAGGGT TTTTGGTGGC GAAAAAGGAG CAGATGGGTA ATCCACGGAG ATCGAAGACG GCGGACGACC
TTCATTCGGC GGCGAGGTCT GGGGATCTCA TCGCCGTTCA GTCAATTTTG GCTTCAAATC CTTTGGCCGT TAATTCCAGA
GATAAGCATT CCAGAACACC GTATCCTCTT CATTCTCGTC TTATGTTTTT CAATTCGTTA GTTAATTCGA TTGCAAAGTG
AGCGCAACGC GACAGGAACC CTAATAATTA GTTTTCTACA ATGTATTGTT GCTGTTCTAG ATAACAATAC TCTCATTTGA
TGCTGAATAC TTTTCTTTCC TTCTCGTTTT CTCTACACAA GTAGCTGGCA TAAAAAAATC ATTTTGGCTG GTTGTTTCAA
TGATATGATT TGTTGTAGCA TTTGTTTCAT TCATATGCAC TGCATATTTT GCTCTCCTGT TTAACCATCC ATTTTGAACA
TCATTATCAC CCCCTGTTGT TGAACAAAAC TTAGGTCCAG CTTTTAAGGG ATTTTAGTAG TCTGATCAGA AATTCACTTC
AGTAGCCTAT GATAATTTTC ATGCAAACCT ATACTATATA AATTACTGTG GAAAACTTCA ATTGTGACTG GAGAACGACA
CTACAAAATT TTGTCTGTCA TGAGTAACAT GATGCTGAAG ATGCTATTAC ACGTTCCTGA GTACAGGATT TTTCATGTAA
GAAAACGGTG ACGTTGTTTG TTTAATCTGA ACCTATGTTG GTGCCATTAT TTCTATCCAT ATCTGCTTTC TTCAGATTGC
ATTATAGGCA GAATTGAAAC AAAAATTTAT GTGGGTGAAG TAGTAACTAG TGGTCTGCTC GCTTTACTTC CCACTTTAAA
TTATATTCTA AAGCAATGTC ATGCTAATTA AATACTAAAT TTTCATCTAA CTTCGGTTAA TTGTTTTCAA AACATGTATT
CTGGGAACCA AAAACTAAAA TAATTAGATG TTTTTTCACC CTGTTCTTCA GTTTTATGGT TAACTCAAAG GAGTGAGTCA
TTTGGAGTGG TATTGTATGT GGTTAGACAT GAGCTTGGTG TGATTTATTT ATTTATTTTA AATAGGAATC AACTATACAC
CTAGGTTCTT CTTTGGAATT CTTATTTGCG TTGCCCTGTG ACTTTGTTTC TTTGACTATC AACTTTGGGC AATAGTCTAC
ATTTAGCAGC ATTTTCTGGG CAAGCAGAGG TAGTCACTTA TCTCTGCAAG CACAAGGCTG ATGCTGGTGC TTCTGCTATG
GATGACATGG CTGCAATACA CTTTGCTTCA CAGAAGGGAC ATTTAGAAGT TGTTCGAGCT CTACTTTCAG CTGGGGCCTC
TCTCAAAGCA TCTACCCGCA AAGGCATGAC TTCATTACAC TATGCTGTTC AAGGTTCCCA TCTGGAGCTC GTCAAGTATT
TGGCCAAGAA AGGAGCAAAC CTTGCTGCCC AGACAAAGGC AGGAAAGACC CCTTTGGATC TTGCTAACAA TGGAGAAATC
CGATCCTTTC TGGAGGAATT TGAGAAGTCA GCAAAGAATG GAGAATTGGG AAAGAAAGAT AAAGATAAAG CTGAAGAATT
TGATCCCAAC ACATCTGAAT TGGAATTGGA ATCGGAAGGT GATTTGAATG CCGAGCCTCC TAATGCTGCT CTTGATGAAG
AAAAAAATGC AAGAGAAAAG AGAAAGGGTA ATGAAGACGA CGCAAGAGTA GAGTCGTCAC AACCAAAAAA GGCGAGAGTT
AAGTTAAGCC ATCTCCAAAG TTCAGATGAT ACCCAAGAAG AAGAGAACAT GTAGGTTGGT ATAGGCGCAG TAGAGCTTAC
ATTTTGTTAT TGTAATATAG TTAATTGTAT CTGATTTGGA ATCCGTTTGT TGGGTTACTG GACCAGACTA TCTGTAGAGT
ATTGATAAGA ACTTATTCTG GATTAATACA ATTTTATCTT GATAGATTAA ATTATCC

[show][hide][copy]TRANSCRIPT

>Vigan.10G126000.01
ATTGAAAACT TTAAAATTTT TGAAGACACC AGGAAAAGAC AGAAAATAGA GAAGGGTTGC GGAAGTAGTG TTAAAAATTC
AGAATTGACA TAACAAGGGT TTTTGGTGGC GAAAAAGGAG CAGATGGGTA ATCCACGGAG ATCGAAGACG GCGGACGACC
TTCATTCGGC GGCGAGGTCT GGGGATCTCA TCGCCGTTCA GTCAATTTTG GCTTCAAATC CTTTGGCCGT TAATTCCAGA
GATAAGCATT CCAGAACACC TCTACATTTA GCAGCATTTT CTGGGCAAGC AGAGGTAGTC ACTTATCTCT GCAAGCACAA
GGCTGATGCT GGTGCTTCTG CTATGGATGA CATGGCTGCA ATACACTTTG CTTCACAGAA GGGACATTTA GAAGTTGTTC
GAGCTCTACT TTCAGCTGGG GCCTCTCTCA AAGCATCTAC CCGCAAAGGC ATGACTTCAT TACACTATGC TGTTCAAGGT
TCCCATCTGG AGCTCGTCAA GTATTTGGCC AAGAAAGGAG CAAACCTTGC TGCCCAGACA AAGGCAGGAA AGACCCCTTT
GGATCTTGCT AACAATGGAG AAATCCGATC CTTTCTGGAG GAATTTGAGA AGTCAGCAAA GAATGGAGAA TTGGGAAAGA
AAGATAAAGA TAAAGCTGAA GAATTTGATC CCAACACATC TGAATTGGAA TTGGAATCGG AAGGTGATTT GAATGCCGAG
CCTCCTAATG CTGCTCTTGA TGAAGAAAAA AATGCAAGAG AAAAGAGAAA GGGTAATGAA GACGACGCAA GAGTAGAGTC
GTCACAACCA AAAAAGGCGA GAGTTAAGTT AAGCCATCTC CAAAGTTCAG ATGATACCCA AGAAGAAGAG AACATGTAGG
TTGGTATAGG CGCAGTAGAG CTTACATTTT GTTATTGTAA TATAGTTAAT TGTATCTGAT TTGGAATCCG TTTGTTGGGT
TACTGGACCA GACTATCTGT AGAGTATTGA TAAGAACTTA TTCTGGATTA ATACAATTTT ATCTTGATAG ATTAAATTAT
CC

[show][hide][copy]CDS

>Vigan.10G126000.01
ATGGGTAATC CACGGAGATC GAAGACGGCG GACGACCTTC ATTCGGCGGC GAGGTCTGGG GATCTCATCG CCGTTCAGTC
AATTTTGGCT TCAAATCCTT TGGCCGTTAA TTCCAGAGAT AAGCATTCCA GAACACCTCT ACATTTAGCA GCATTTTCTG
GGCAAGCAGA GGTAGTCACT TATCTCTGCA AGCACAAGGC TGATGCTGGT GCTTCTGCTA TGGATGACAT GGCTGCAATA
CACTTTGCTT CACAGAAGGG ACATTTAGAA GTTGTTCGAG CTCTACTTTC AGCTGGGGCC TCTCTCAAAG CATCTACCCG
CAAAGGCATG ACTTCATTAC ACTATGCTGT TCAAGGTTCC CATCTGGAGC TCGTCAAGTA TTTGGCCAAG AAAGGAGCAA
ACCTTGCTGC CCAGACAAAG GCAGGAAAGA CCCCTTTGGA TCTTGCTAAC AATGGAGAAA TCCGATCCTT TCTGGAGGAA
TTTGAGAAGT CAGCAAAGAA TGGAGAATTG GGAAAGAAAG ATAAAGATAA AGCTGAAGAA TTTGATCCCA ACACATCTGA
ATTGGAATTG GAATCGGAAG GTGATTTGAA TGCCGAGCCT CCTAATGCTG CTCTTGATGA AGAAAAAAAT GCAAGAGAAA
AGAGAAAGGG TAATGAAGAC GACGCAAGAG TAGAGTCGTC ACAACCAAAA AAGGCGAGAG TTAAGTTAAG CCATCTCCAA
AGTTCAGATG ATACCCAAGA AGAAGAGAAC ATGTAG

[show][hide][copy]PROTEIN

>Vigan.10G126000.01
MGNPRRSKTA DDLHSAARSG DLIAVQSILA SNPLAVNSRD KHSRTPLHLA AFSGQAEVVT YLCKHKADAG ASAMDDMAAI
HFASQKGHLE VVRALLSAGA SLKASTRKGM TSLHYAVQGS HLELVKYLAK KGANLAAQTK AGKTPLDLAN NGEIRSFLEE
FEKSAKNGEL GKKDKDKAEE FDPNTSELEL ESEGDLNAEP PNAALDEEKN AREKRKGNED DARVESSQPK KARVKLSHLQ
SSDDTQEEEN M*