GBrowse Details

Vigan.10G121800.01

Basic Information:
Name: Vigan.10G121800.01
Multiple alignment
Variant Information
Position: Chr10:17675393..17679163 (- strand)
Length: 3771
Functional Information:
Description: Similar to 50S ribosomal protein L35. [G7K876, Medicago truncatula]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L35, non-mitochondrial (IPR001706)
Ribosomal protein L35 (IPR021137)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.87,9.38,14.10,12.86,19.71,12.10,13.26,10.36
Arabidopsis thaliana homolog: AT5G45590.1
Automatic updates:
Name: NM_001253194 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100814427 (LOC100814427), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17675393..17675695 (- strand)
Length: 303
Type: three_prime_UTR
Position: Chr10:17675696..17675785 (- strand)
Length: 90
Type: CDS
Position: Chr10:17678366..17678450 (- strand)
Length: 85
Type: CDS
Position: Chr10:17678557..17678660 (- strand)
Length: 104
Type: CDS
Position: Chr10:17678738..17678932 (- strand)
Length: 195
Type: CDS
Position: Chr10:17678933..17679163 (- strand)
Length: 231
Type: five_prime_UTR

>Vigan.10G121800.01 class=Sequence position=Chr10:17675393..17679163 (- strand)
TAAAAGACTC TACTTCGTAC ACAATGAGGA GCTAGGAAGC CCAAATTAGG CTCCACTAAC AAGAAACAAT TAAGCCCAAA
TTAGCCCAGA TCTTCACCTC AAAGTTAAAC AAAAACTAGA ATTAAAAAAA AAAAAATCCC CAAATTCGAA GGTGAAAAAG
AAGCACTTTG GCAATCGCAG GTTTGGGTTC GATTGTGCAG AGTGCAAAAA CTGCAAATCA GTGAAGTCGC CATGCTTCGT
TGTTTGTCGA AACTTCGTTG TCTCGCCCTT CAATCACGCC AAATTCTACC ACCGCCCTCT TCTCGGCGGC TCCTCCACCA
TTTGCGGCCG CAACCGCTTC ACTCTGCTTC CACATTTCGC ACTTCTTCTC CTCCGTCCTT AGTTTTCTCT TCATGGCCTC
TCCACGCATC TCATCCTCCC CCTTCCGTAA GTCTTCGATG CTAACATCTA GAGTTTGTCA TTCCGATCGT CATTGTTATA
GCAGTTTAAT TTGGTGTGTA TAGTTGGTTC AAGTGCGCCA CGTGTCGTCC AGGGAACGAA AACTGAGAAG AAAGCCGATG
ACTCCAACTA TTTCCAAGGT TAAGAAAACG AAAATGAAAT CTTATTCGTA AGTTTCCTCT TCGTTACTCG CATAGGTTTT
TGGGGGTAGT GTGTGAATAT TTCTTTTTTC TTTTGTTTGT GAGAAGTAAG TGATTTCACT ATGGTTGGGG CAGGTCTTTA
AAATCCAGAT TCAGAACAAT GAATGATGGG AACATCAGGC GCTGGAAGGA AGGCAAGCGT CACAATGCTC ATCTCAAGGT
TCAGTTTTTT TTCTTTTTCT GGATTGATGA GGTTTTATGA TATGTGATGA TAACCCAATT TAGATAAACT TATCAGTAAG
TGTTTATAGG GGAAAATTTA AAAAAAAATG AAAAATGAAT TAAACTTCTT TTATAAGTTA TAACTAACTT CTTCCTGTAT
TCTCCAAAAG CTCAGGTGGA TGAGGTTTAG TTCATTTTTT TTTATTCTCT TCCCCTGTAA TTGTTTGTAG ATAAATTGGT
CCAAACAGGC CCTTTCTGAT TGTTTGTTGG AATGTGAGTT TCTTGTTGGT GGTTCTGTGT AGAATCCTTG ATAATTTCTG
TTTGCTCTAT CAGTGTGAAT AGCCAAACAA ATCATGTCAT ACTCATTCCC AAAATTCCCT TCTCAACATT TCATGAGGTG
CAAATAAGTC ACAGAAGTTG TTGACTTGTT CTTATTCACA GTGGACTGAT GCTGTCCTTC CTAAGCAAGA TTCATATAGC
ATTTGTTTGT AGTACATTAC GGTGGCAAGT TTCTTTCAGA GACAAATTGC TTTTGAAAAT ATAAATCATA ATTGCCGTTT
CTAACCTAAT AGCTAGATTA TGATTTGGAT TTCTTCATTT GCAGAAAATA GAGCAACTTG TGTTTCCTTA GGATGTACAA
TTGTAAAATT TAGGGTGACG AGGCATTAGT TATGGTATGC TTGTAGATAA AGGTATTAAC AAGCATTTAA CAAAAAGATA
TGAAAATATA ATATTTGGTG GCATTGGCAT TTGTTGTGGG AGGTTGCACT ACAGGCCAAT TCAGCATGAT TACTGGTTTA
TTGAAGAGAA AAACAATTGT GAAGTTTTCC TTGTTTTGGG TTTTTGCTGT GATTGATGTT GAGGTGGTGG TATACAATGC
ATAGCATGTT TCCAATTATG TCATCGTAGC TGTTGGGACA GTTGGCACCC AGCTTTAGCA TGGCTATATC TGTGATATGG
TTACTTGACA ATAAATACTT ACATTTTTTT GGTTCATTGC CTCGTTGGTA TACTTCTACA GTAGTATTTG TTGACTCCCT
CATTAGCTGT GTGCTGTGAA AATAACATTG TAAGATGGTG TGATGTGATG TACAAAACAC GAACATTTAC ATCTGTTTAT
AAATTATATT GTGGTCAAGT TTTCTAGGGG GCACATCCTC TACTTTATAT TCGGAACTTT GAATTAGTAT GTTGTATTAA
GAAAAAAATT ATAATCATAT TCTCACAGAG AAAGCATTTT GCAGAAAAGT TGTTTGTGTT AAATTCAGCA AAGCAATCAT
CTATGAACTA TCTCAATAAC ATTCCTTACA TGATTACTTA CAACGATAAA AAACTAGCTG TCCCAAGTCC TAACATTATT
AGTCTAACAT TAGTTGCGCT AAAAAAATTC AGTCATTGGC GCCAATACAT AGATTTAAAA TTTTTATTTT TTTATATTTC
TTAAAAAGGT TGTATAAATG TTAGAGATAA TAAAAAATGT TTACATGTAT GATTTTGTGG TTTTAAACTA ATTTGCTCAT
TTTCAAAACA ATGTGATAGA AGTCAACTTT ATTATTATAT TCATATACAA AACTATGGAA GTTTAAGACA TGAATGTGTA
CATAAGAACT GATGAGGTTA AAAATCCTAG AAGTCAAAAG GAGTATTTGT TATTTGCCCA CGTGTAAATA TACATAACCT
CTTATATGTC CATTAAGCAA TATAAAAATA TAAATTCTGT TATTGAACTT ATTTAGTTTT AACCCCTTCA ATTCCTTTTT
GCATGGTTGA TGTAAATTAT ATACTGTCAT ATTTTCTGGA AAATAAGGTC ATAGAACAAT TTGTTTGAAT TTTTCGCTTT
TTGTTGATGT GATTCTGGTT GGTTTAGACT ATAGATAGAT CAATGAAAGT ATGTGTATGA AATAAAAGTC TAAAATGGGT
TGAGTTGCTT TCTTCCTCAT TGATTAATAA ATGTCAGTGT GTAATTCAGA ATTCACTGAA CAAGCAATTC AAAGGCACAG
GGGGGGCAAC ACAAAGCACT GTTATATATC TGAAATACGG AATTTATATT TAGTAAGGGC ATCTATGACC CCACAATTCA
TTCGATGTTG ACATGTCCAT ACTTCTAGAA TAAGAATACT AGTATAGCAA CTGTTTTACC AAGGGTGAAT TTCTTTCTCA
CTAGCTAAGA TATAGAGTCA TGGGGTGAAT TACTAATTTT TATCCTTGTT TGCTGGCTCA TAAATGTCAA TGGGAAAATT
CAGAATACAC TGTAGGAACA ATTCAAAATT CACAGTTGCG ACAACAAAAT TACCTGTATC GTATGTATGT CTGAAATGCG
GAATTTGTAT CTGGAGTCAG AGTATAATAT ACCAAAGGCG AATCTATGTC AATGTTATAT ACTGAAGACA AGGGGATTGA
ATGAGTATTT AAAATCAATT ACAAGATTAG CATGGTTACC TGGAAAATAA AAAGGGGTAG GGCAGGGAGG GAGGATCCAA
ACAGTCAACT ATGCTTCTCC TAATTTTCTC TCTCATCCAA CAGTATTGTA TGGATTTATC TCTACTTAAA ATTGATGAAT
TTCTGGTGTC CATTGCAGTC AAAGAAATCA AAACGTAGAT TGAGGAAACC TGCTATTGTT CCAGCGGCTT ATGCCAAAGT
AATGAAGAAG CTCAATTTCT TTGCTTAGAT ATTGGAAGTT TTGCTGCTGG TTACAGCATG AAAGAGGATC GACCAGGTTT
TGCATTTTTA ACTCCAATCA TTTGTTGACC TTCACATTTT AGAATCTGTA AAACGAGCAA ATTGCCGAAC AGTTTGTTTG
TTGTGGAACA GTTTGAATTG ATGATATTTC GAGGTCATGC CTATTTAAAG TGGCATGTTT TAGTTGATAA TGTATGCATT
ATTGTTAACA TCCCAGTGGC TGATTGATCC TTTCATGTGA TACATTCAAT TTGAGTTCAG TTTGATAAAG TATCGGACTC
CTGGATACAT G

>Vigan.10G121800.01
TAAAAGACTC TACTTCGTAC ACAATGAGGA GCTAGGAAGC CCAAATTAGG CTCCACTAAC AAGAAACAAT TAAGCCCAAA
TTAGCCCAGA TCTTCACCTC AAAGTTAAAC AAAAACTAGA ATTAAAAAAA AAAAAATCCC CAAATTCGAA GGTGAAAAAG
AAGCACTTTG GCAATCGCAG GTTTGGGTTC GATTGTGCAG AGTGCAAAAA CTGCAAATCA GTGAAGTCGC CATGCTTCGT
TGTTTGTCGA AACTTCGTTG TCTCGCCCTT CAATCACGCC AAATTCTACC ACCGCCCTCT TCTCGGCGGC TCCTCCACCA
TTTGCGGCCG CAACCGCTTC ACTCTGCTTC CACATTTCGC ACTTCTTCTC CTCCGTCCTT AGTTTTCTCT TCATGGCCTC
TCCACGCATC TCATCCTCCC CCTTCCTTGG TTCAAGTGCG CCACGTGTCG TCCAGGGAAC GAAAACTGAG AAGAAAGCCG
ATGACTCCAA CTATTTCCAA GGTTAAGAAA ACGAAAATGA AATCTTATTC GTCTTTAAAA TCCAGATTCA GAACAATGAA
TGATGGGAAC ATCAGGCGCT GGAAGGAAGG CAAGCGTCAC AATGCTCATC TCAAGTCAAA GAAATCAAAA CGTAGATTGA
GGAAACCTGC TATTGTTCCA GCGGCTTATG CCAAAGTAAT GAAGAAGCTC AATTTCTTTG CTTAGATATT GGAAGTTTTG
CTGCTGGTTA CAGCATGAAA GAGGATCGAC CAGGTTTTGC ATTTTTAACT CCAATCATTT GTTGACCTTC ACATTTTAGA
ATCTGTAAAA CGAGCAAATT GCCGAACAGT TTGTTTGTTG TGGAACAGTT TGAATTGATG ATATTTCGAG GTCATGCCTA
TTTAAAGTGG CATGTTTTAG TTGATAATGT ATGCATTATT GTTAACATCC CAGTGGCTGA TTGATCCTTT CATGTGATAC
ATTCAATTTG AGTTCAGTTT GATAAAGTAT CGGACTCCTG GATACATG

>Vigan.10G121800.01
ATGCTTCGTT GTTTGTCGAA ACTTCGTTGT CTCGCCCTTC AATCACGCCA AATTCTACCA CCGCCCTCTT CTCGGCGGCT
CCTCCACCAT TTGCGGCCGC AACCGCTTCA CTCTGCTTCC ACATTTCGCA CTTCTTCTCC TCCGTCCTTA GTTTTCTCTT
CATGGCCTCT CCACGCATCT CATCCTCCCC CTTCCTTGGT TCAAGTGCGC CACGTGTCGT CCAGGGAACG AAAACTGAGA
AGAAAGCCGA TGACTCCAAC TATTTCCAAG GTTAAGAAAA CGAAAATGAA ATCTTATTCG TCTTTAAAAT CCAGATTCAG
AACAATGAAT GATGGGAACA TCAGGCGCTG GAAGGAAGGC AAGCGTCACA ATGCTCATCT CAAGTCAAAG AAATCAAAAC
GTAGATTGAG GAAACCTGCT ATTGTTCCAG CGGCTTATGC CAAAGTAATG AAGAAGCTCA ATTTCTTTGC TTAG

>Vigan.10G121800.01
MLRCLSKLRC LALQSRQILP PPSSRRLLHH LRPQPLHSAS TFRTSSPPSL VFSSWPLHAS HPPPSLVQVR HVSSRERKLR
RKPMTPTISK VKKTKMKSYS SLKSRFRTMN DGNIRRWKEG KRHNAHLKSK KSKRRLRKPA IVPAAYAKVM KKLNFFA*