GBrowse Details

Vigan.10G119600.01

Basic Information:
Name: Vigan.10G119600.01
Multiple alignment
Variant Information
Position: Chr10:17398668..17401283 (- strand)
Length: 2616
Functional Information:
Description: Similar to Zinc finger and BTB domain-containing protein 11 isoform 1. [XP_007019800.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.30,21.46,40.22,65.09,29.38,74.80,27.34,25.32
Arabidopsis thaliana homolog: AT1G33810.1
Automatic updates:
Name: NM_001251313 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500447 (LOC100500447), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17398668..17399012 (- strand)
Length: 345
Type: three_prime_UTR
Position: Chr10:17399013..17399086 (- strand)
Length: 74
Type: CDS
Position: Chr10:17399491..17399605 (- strand)
Length: 115
Type: CDS
Position: Chr10:17400990..17401205 (- strand)
Length: 216
Type: CDS
Position: Chr10:17401206..17401283 (- strand)
Length: 78
Type: five_prime_UTR

>Vigan.10G119600.01 class=Sequence position=Chr10:17398668..17401283 (- strand)
AACAATAACC ATAACCTAAT ATAAGAGGAT AAAAGAAGAA GTAAGAGAAT CGGGATAAGG AGAATTGAAA TTTCAGAGAT
GGCGAAGAAG GGGAAGAAGC AACTGATGTC ATCGGCGCCG TGGCGAGGCG AGGAGAGCGA AGTGATTGAA GAGGGAAAGC
TGAAAGTGAC GAGGCAGGGT GATGGCACCG CAACCATGCA CGTTCCGGCT TCCAAGTCCA ACCATCTTCA CCAGGATGAA
GATTCCATCG AAATTGATCC CGAATTACGC TACAGTTTCC AGCGCAATTT CCAGGTTCTT GTTTTTTTCT TAACAGAACT
CTTCTATCTA TGTAAGGGGA ATTTCATTTC AAAATTAGGC ATAGGTCTGT TTTGATAAAT TTATGCACAA ACACTCATTC
CAGTAGAAAC TAAGTAAGAA AACTAAACAA AATTGTTGAA TAAGTTAAGA TTAGTTTCTA TAACTGCGTG AACAAACTTT
TACATAGAAA CTAGTTTGTA GTGTTTTCAA TGCGTGGAAG CTCTTTGCAT TTTTTTAAAA ATTGTGTATT ATTATTTGTT
TTATTTTATT TTTCTTTTGG AGAAGTTTGT CTTGCAAGAG AGTCTCTGTA TGTTAGTTAA AAATTGATGT TATGAGAAAT
TGATAGGATA GAGATTGAGA AATTAATATG TAGCTAATTT TAAATAAAAA GCCCAGGATA GTTCGTTATC TAGGGACTTT
CCCCTAGGCC CTGCAAGTGA CATAGATTTT AGTGCGAAAT TTTTTGTAAG ATGTGGATCG TTGCTTTCTT AATGTACTGT
TCAGAGTCTG AATTTCGTCT GCCGAATTCA CTGTTAAGTA ACATAGAATC ATGTTCTTTG CTCATGGTCG CTCATAAAGT
CGAGCGAGTT TGAGTACAGA ACCATGTTGA GTTAACTTGG AAGAAAATTG GTTTCTGATA AGCTCAGGGT GAACTCGGAT
GTACTCACGA GTTTGGTGCT ACCAGGCAGT TATTATTTTG ATTACTTTAT TACGGGATTA TGATGTCGAA CTATTATGCT
AGTTAGAGGT ATTTTAATAT TTTTTTATAG AATAAATTCA TAGACAGTTT AAGAAAACTT GAGTTTGACT ACCTTTAATG
ACCTTTAACT GATATCGTTA AAAATTGCGG CATATCCAGG TTGGTTTCCT TCCTAGTAAT TAACCTTTTG CTATTACACT
CTTATGCACC ATACGAGCAT ATTACATGCT AGTGCCTACC CATTTGTGAA GGACGGACAC ACCTCGTTAA TGGTCTTACA
TATATCCAAC ATCGATACAT GTATGACATG TAAAATGTCG AATTTAAAGG ACATTTTTTT TGTGTCTTCG GCATCCATGT
TGTGTCCGAT GTTTATGTTA GTGCTTCATA GCTACCCTTT TCTCTCTTTC CATATATTAT CATATTTATG TTATTATTAG
TATTACGGTA ATATTATTAC CCATTCTATA TAAAGACTTC AAGCATGTTT GGAAACCGAT GTCAAAGAAT GAAATGCAGA
AGTAGCATTT TGTAATGAAT GTGTGTTTAG CTGGATGGAA CTAATAACTA AACAAACACT ACTATCATTT CCTTCTTGTT
TGTGGAATTT ATTTAGCGTT GATGTTCTTC TCCAAATTTT GGACTGATGC GTTTTTTTTT TCTTTTTGTA TAACGCAGTT
TCTTCAACGG GTTTTTAGCA TTGACACTGT TGTGAAACCT CTTCCTCCTG TCATGGCATA CAATGTCTCT CGCAACTTGG
GCTTCTTCAC TCGCATTTTC ACCCAATTTT TTGGTATGTT TTATTTGCAG CTCCTTTTTC AAAATAGTGT CTTAGAATGT
ATCTTCCTGG TGTTTTTCTT GAAACATAGT TTTATTTCAA ATATTTTCTC TTGCATTTTA TGCGAAGCCT TCAAGTTGTC
CGTTACTCGT TGCTAACTTT TACTACTACA TACATGCACA GTAATCTCAA ACCTTTTTTT CCTTTCTCTT TAATTATATA
TTATCTACTG TCTAAATTGA TTATATTAGT TTTTCTATGT TTTATTTGGT ATTTGAGTGA TCATATTAAT TTGTATGATC
TATAATGGGA AAAAGTTAGT GGTGTTATTT CTGCATCTTT ATTGAATTAG CTATTATGTT TATTTTGGAA AACTGGTATT
TGTTAATCTT TAATGTTTCT TTGCGTTTAT TTTACAGATC CTGAAGGTAT TGCAAATGCC CAGAAATCCT TGGGCATAGG
ACAGGAGGAT AAAGTTCGCA AAGTTCGTTG AAGATAATGG GGGAAGAGAC AGAATGGGAT TCGAAAAACT TGTCATCTAT
GATTAACCTT TTTCTGATTG ATCACTTGTG GTATTGTTTA ATTCGTAATT CAGTTATATA GATATATTAC AAATTGAGCA
GCACGACAAT TCGATCATTT CATTATCCTG AAAAAAAAGC TTGATCTTAG AGCATGCTGA TAGTAACTCT AATCTAATCA
CAATCTAGTT GTTAGTCAAC AATGAAATTC TCTATCGGAC GACCAAGATG GAATATTATT TTCAGTTAAA AAGATGAGGA
AATTGATCGT TAATTATCAT CGTTTTCCTG TCTCGAAAGA AAGGATTTTT ATCCTC

>Vigan.10G119600.01
AACAATAACC ATAACCTAAT ATAAGAGGAT AAAAGAAGAA GTAAGAGAAT CGGGATAAGG AGAATTGAAA TTTCAGAGAT
GGCGAAGAAG GGGAAGAAGC AACTGATGTC ATCGGCGCCG TGGCGAGGCG AGGAGAGCGA AGTGATTGAA GAGGGAAAGC
TGAAAGTGAC GAGGCAGGGT GATGGCACCG CAACCATGCA CGTTCCGGCT TCCAAGTCCA ACCATCTTCA CCAGGATGAA
GATTCCATCG AAATTGATCC CGAATTACGC TACAGTTTCC AGCGCAATTT CCAGTTTCTT CAACGGGTTT TTAGCATTGA
CACTGTTGTG AAACCTCTTC CTCCTGTCAT GGCATACAAT GTCTCTCGCA ACTTGGGCTT CTTCACTCGC ATTTTCACCC
AATTTTTTGA TCCTGAAGGT ATTGCAAATG CCCAGAAATC CTTGGGCATA GGACAGGAGG ATAAAGTTCG CAAAGTTCGT
TGAAGATAAT GGGGGAAGAG ACAGAATGGG ATTCGAAAAA CTTGTCATCT ATGATTAACC TTTTTCTGAT TGATCACTTG
TGGTATTGTT TAATTCGTAA TTCAGTTATA TAGATATATT ACAAATTGAG CAGCACGACA ATTCGATCAT TTCATTATCC
TGAAAAAAAA GCTTGATCTT AGAGCATGCT GATAGTAACT CTAATCTAAT CACAATCTAG TTGTTAGTCA ACAATGAAAT
TCTCTATCGG ACGACCAAGA TGGAATATTA TTTTCAGTTA AAAAGATGAG GAAATTGATC GTTAATTATC ATCGTTTTCC
TGTCTCGAAA GAAAGGATTT TTATCCTC

>Vigan.10G119600.01
ATGGCGAAGA AGGGGAAGAA GCAACTGATG TCATCGGCGC CGTGGCGAGG CGAGGAGAGC GAAGTGATTG AAGAGGGAAA
GCTGAAAGTG ACGAGGCAGG GTGATGGCAC CGCAACCATG CACGTTCCGG CTTCCAAGTC CAACCATCTT CACCAGGATG
AAGATTCCAT CGAAATTGAT CCCGAATTAC GCTACAGTTT CCAGCGCAAT TTCCAGTTTC TTCAACGGGT TTTTAGCATT
GACACTGTTG TGAAACCTCT TCCTCCTGTC ATGGCATACA ATGTCTCTCG CAACTTGGGC TTCTTCACTC GCATTTTCAC
CCAATTTTTT GATCCTGAAG GTATTGCAAA TGCCCAGAAA TCCTTGGGCA TAGGACAGGA GGATAAAGTT CGCAAAGTTC
GTTGA

>Vigan.10G119600.01
MAKKGKKQLM SSAPWRGEES EVIEEGKLKV TRQGDGTATM HVPASKSNHL HQDEDSIEID PELRYSFQRN FQFLQRVFSI
DTVVKPLPPV MAYNVSRNLG FFTRIFTQFF DPEGIANAQK SLGIGQEDKV RKVR*