GBrowse Details

Vigan.10G116900.01

Basic Information:
Name: Vigan.10G116900.01
Multiple alignment
Variant Information
Position: Chr10:17010439..17016068 (- strand)
Length: 5630
Functional Information:
Description: Similar to uncharacterized LOC101213975. [XP_004163203.1, Cucumis sativus]
InterPro: Protein of unknown function DUF760 (IPR008479)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.16,16.55,11.04,32.32,7.71,6.37,8.20,10.89
Arabidopsis thaliana homolog: AT1G32160.1
Automatic updates:
Name: NM_001255608 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100810147 (LOC100810147), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:17010439..17010768 (- strand)
Length: 330
Type: three_prime_UTR
Position: Chr10:17010769..17011582 (- strand)
Length: 814
Type: CDS
Position: Chr10:17015289..17015563 (- strand)
Length: 275
Type: CDS
Position: Chr10:17015892..17016029 (- strand)
Length: 138
Type: CDS
Position: Chr10:17016030..17016068 (- strand)
Length: 39
Type: five_prime_UTR

>Vigan.10G116900.01 class=Sequence position=Chr10:17010439..17016068 (- strand)
AGCCCTAATC GTAGGGGCGC GAAAGCTACA ATTCTGAAAA TGCAGGTTTC GAGTGCTATC AGTGACGTTT TGGTTGTGCT
TCCGCCTTCT GCATCTCTCA GACTACCGGA ATTTCGCCAC TTGCATGCTT TTGCCGTTTC TGATGCCAAG GGTTTTCTTT
CTGGTGGATT TCTTAAAGTA AGCTTTTTGT GTTTTACCTT TTTCTTTATT GTTATGTACG CTTTTTCTTT TTTGTTATGT
ATACATATCA TTAACATTAA TATTTTAACT ATACTGACAC TGCCACAGTT CTTGTTCCAT TTGGCTTCAA GCATGATTCC
TGTATTCAAT TTATTCTTTG TCTTGACTTA TCTTTTTATT CCAATTTTTT CCTCTCCATT TAGTTTAATA CTTCTACTTC
TTTTGAAAGT GCCCCATTTT GCTCGCAGAT GCATTCATTA TTTCAGTGTC ACTGCTTATA TTCTTTAGTT TAATGCTTCT
ACTCAACATG TTATATTCTT TGCAGAGCTG TCCTTCGTCT TACAATCCCA AGCACTATAA TGAATTCTAC AATTTCCGAG
CTAGAGGTTT AGTTGCAAGA GCATCAGCTA ATTCAAGGGG CAATTCGGCG CCTTTTGCTC CTCTCCAATT TGAGTCACCA
GTTGGTCAGC TTTTGGAACA AATTTCAAAT ACCCATCCAC ATCTACTGCC AGCGGCCATT GATCAGCAAC TAGAGAATCT
TCAGACTGCT AGAGATGCCC AGAAAGAATC GTCTACTTCA CCTGATGATT CCCTTTACAA GTAAGTCTCG CAAGTTTTGT
TTCATTTTTT CCGTTTGACT AGAAGTACCT ACTTGATAGA CAAAACTTGA GAATGTTCAA ATACTTTTAG AACTATTCTA
ACAATATTAG GTTCATGGCA TGTACAATAT CTTGGAAGCT TTGGTTAAGA AATTCAAATT TTCAATTGCA CTAACTAGAT
AGTGTACTGT GCTATTTGTA GACCCTTTCC TGCAACAAAT GTCTTGTGAA AAAGATTTGC CTGCAGAGTT TTAACTTCCC
TTTATAATAT TTGTCGTTTT TGGTCTTTAA TTTCTTCATT TTCTTGTTAA AAATACGTAA ATAATTAATA AGTTCAAGCT
TTAGTTGAAT GAAATATAAG GCTGTGTTTT TAGATAAGCT ACTCTGGAAG TCCATTTCTG TCTATTACAT GACTGTTAAA
GAAACCCTTA ATTACACTAA TGAGTAGCAC AATATAAAAA TATGAAATAT TCATCGGTGA GTCCATATTT GCATTTTTGC
ATCCTTAGTT AGTGTATCAC TCTTTATCAC CCTTAATTTT TCTGTCAGCT ACTTATATAA TTTTTTTTCC AAAAACACCT
GCATCATTAT GCACACACAG ATAAATAATT GCATGTGATG TGCGTTACTA TTCATACACA CATGATCACT GTCTGTCAAC
TTTGTGGTGC TAGCTCCTTA TGTTTTCTTA TAAACTGATA AAATAAAGGA TGCTATTTGT TTATAAACTT GTTATTCCGA
AAATGTATTT TTTTTTTTTG GTTGGGGAAG GCATGTAGTT GGTGCTGGTG ATAGCTGCTA CGAGAAGGTT TGCTATGGTT
GTAAAGTTTT GCCGCCTATT TATTCACCTG TGTGAAGGTT GTTGTAGCCA GAAGATGATT CCTTTTTCGT GTTAGACTAT
TCTAAATGAC AATATTCTAG GAAAAATTCT AGCTAACTGT TGGGATAAAC TTAAATTTTA GGGTTTTATT AATAATTTTG
ATTAAATCTT ATTTTATAAG TTTTTGGGTA TAGTAATATT TAGTTTGATT TGATAGAGAT AAAATAGGGA CACGTAGTTA
TGATTTTCGG TTTATCTAGA TACAATATTA TTTTATGATA GATTAAGCAG ATTTTATTGT TAAGATAGTT GATATTTTAT
TTTTATTCCT CGTAATATTG TAAGTGTTAT GGCTATTTAA AACCCTTTCA GGAAAATATC AGAGTGCGTA TATTGTGAGA
TTTTCCCAAC AGTGGTATTA GAGCTTTATG CTCTGAGTAC CGAGAGAGAG AAAAAGAGAG AGAGGAAAGA GTCAAACATC
GTGAGAGAAA AGGTGAGTGC TTGATTTTTT GAGAAATGGC AAAGGTTGTC AATGGTATGA GTGTGCCACA ATTGACGAGA
AAAACCAATT ATGATAATTG GTGCCTACAG ATGAAGGCGT TATTGAGATC CCAAGACATT TGGGATATGG TGGAAGACGG
GTACGTTGAA CCTGATGCGG ACGAACATCA GACGGTGGCA CAGTTGACAG CATTGAAGAA AACTCGTGCA AGAGATGGGT
CAGCATTATA TTTCATCTAC AATGCAGTAG ATGAGTCGGG ATTTGAAAAG ATAGCGAATG CCAAATCAGC AAAGGAAGCC
TGGGAGATAT TGGAGGTTGC ATATAAAGGT GACAACCGTG TTAGACAAGT CCGAATACAA GCTCTCAGAG GAGAGTTTGA
ACAGTTGAAG ATGGAACCCA AAGAGCATAT AACCGAGTAC ATAACTCGGG TGGAGAAGGT GGCCAACCAA CTCGGTAGGA
ATGGAGAACA AATGCCATCT AGCCAGGTTG TGGGAAAAAT TTTAGGATCT CTTACAAAAG ATTTCGAAAG TATCGTGTGC
ACCATCGAAG AATCGAAGGA CTTGTCGATT CTCACAGTGG ATGAACTTGC TGGGTCATTA GAAGCCCACG AACAAAGGAG
AAGGAGTTGG GATGATCAAG TTGAACCCGA CGACCAAGCA CTACAGGTAC AGTTTGACTC GAATAAAACT CGGATTACTC
AGAGCTGAGG TCCTGGTGGC AGAGGACGAG GTGGACGTGG CCGAGGTAAT GATAATGAAG ATCAAACCGG TCAGCAAAAT
TGGCATGACC GAGGACAAGG AAAAGGTCGA GGAGATCAGT CAAGAGTGGA GTGTTTTAAG TGTGGCAAGT ACGGCCACTT
TGCAAACGAG TGTAGGTCAA CAAAGTGCTA CAACTGTGGC AAGTTTGGTC ATATTGCAAA GTATTGCAAG ACCGAGACAA
AGGGGGAGAC GAATCTCGTT ATTGAAGATG CAGAAGAAGA TGTAGAAGAA CTATTGTGGC AAAGAGCTCG GATACAGTAG
ACATGGAAAA TTCCGTCTCA ATATTGGATG AAGTGATCTC GGTAAAAGGT GTGACAAATG TGGAAAAGGA ACTCAAACAA
AAAGATGAAG AGATTCAGCG GATGGGGAGG CTTTTGGATG AAGCTAATGA AATTATGAAT AAACAGAGGG TTGAGCTTGA
GGAGTTGAAG AAGACGACTC CTGAAAAGGA AGAGAAAGCA TCTAGCGTTA TTGAACTAGA TAAAAATAGG GAAGAAGATG
AAGAAGAGAT GAAGGATGAT GGGATTTCTA CCAACTCGGT ATGGTATCTA GATACTGGAG CAAGCAATCA TATGTGTGGG
AAGGAGAACT TTTTTTATGA ACTCACCAAG GTGGAGGCCA AATTTGTGTC TTTTGGAGAT GACTCCAAGG TGGCCGTGAA
ATGGCGTGGA ACAATTCGGT ATATTCAGAT TAATGGACGA GTTGGAGAGA TTAGGGATGT TTATTATGTT CCGGAGTTGA
AGGGCAATAT TTTAAGCATG GGTCAGATAA TTGAAAAAGG TAATTCAATT TTTATGAAAA ATCAGGTTCT GTATTTAAAG
GATAAGCATG GTCGTCTAAC AACCTAGGTA AAAGCAAAGA AGAACCGATT GTATGAATTG GAGCTGAAAA TCTTGGAGAG
AAGATGCAAA CCCGGAGTAG GATGATGCAC ATGGAAAGTC GAACGAAGGA AGGAAGAATT TAAGTTTATG GGAGAGTTTG
TTGGGATAAA CTTAAATTTT AGGGTTTTAT TAATAATTTT GTTTAAATCT TATTTTATTA GTTTTTGGGT ATAGTAATAT
TTAGTTTAAT TTGATAGAGA TAAAATAGGG ACACTTAGTT ATGATTTTCG GTTTATCTAG GTACAATATT ATTTTATGAT
AGATTAAGCA GATTTTATTT TTAAGATAGT TGATATTTTA TTTTTATTCC TCGTAATATT GTAAGTGTTA TGGCTATTTA
AAGCCCTTCA ATTATAATGA ATAATAAGAC TCAATTTCAG GAAAATATCA GAGTGCGTAT ATTGTGAGAT TTTCCCAACA
CTAAGTACTT AATTTTTAGT ACAATTTATT ATACTAATTC TAGAGTCGTC AAGATGTTAC AATATTCACT GGTACATCTA
ATTTCTTGTA GAATGAAAGT CTTCTAGAAA TCTGAATCAA ATTTTAACAT AAACAAATGT TTAACTCACT TATAAAGATA
CTCTATCTCT TCTGTATCTC ATGTTAACGC ATACGGATTG GAAAATTGAT ACTCATAATG TTTCATGGTC GCAAATTTAT
AGCAATCATA TATTTGCAGC AAATGGTGGC ATATTTAGTT ACTGCTAGTA CAGAAGTGAT AAATTTTTGT CAAATCTGAA
TTTTAGGAGG ATAGCTGAAG TCAAAGAGAA AGAGAAGCGA ACGACATTGG AAGAGATCAT GTACTGCTCA ATTGTGCATA
AATTTTTAGA GAACAACATT TCAATGATTC CAAAACTAAC AGCAACATCA GATCCAACTG GTCGAGTGGA TTTATGGCCA
AATCAAGAGC TGAAACTAGA AGCTGTGCAT TCTCCAGAGG CATTCGAGAT GATTCAGAGT CACTTATCTT TGGTACTAGG
AGATCGGCTT GTGGGTCCCC TTCAGACAAT TGTTCAGATT AGTAAAATTA AACTGGGAAA GCTGTATGCT GCTTCCATAA
TGTACGGATA CTTTCTCAAA CGAGTTGATG AACGGTTTCA ACTTGAGAGG TCAATGGGAA CCCTCCCCAA GGATTTGGGA
AAGACTAAAA GTTTTGAGGA ACCATCACCA GGTATCAAGC TTTGGGATCC TGATTCCTTG ATCACAGTTC AGGATTACGA
CGATGACAGT TATAGTGATA GTGATTACAT GGATACAGAA GGCAAATCTT TCAGACTAAG AGCTTATGTG ATGCAGTTGG
ATGCAGAGAC ACTTCAGAGA CTTGCTACTG TACGATCAAA GGAAGCTATA TCATTGATTG AAAAGCAAAC TCAGGCCCTG
TTCGGAAGGC CTGATATCCG TGTGTCTGGT GATGGTTCAA TTGAAACATC CAATGATGAA TTGCTTTCAC TCACTTTCTC
TGGCTTGACC ATGCTAGTTT TGGAAGCTGT TGCTTTTGGA TCATTCCTCT GGGACAAGGA AAACTATGTT GAATCCAAGT
ACCCTTTTCT TAATGAGTAG ACTAGATCAC TGTACCATTA GATTATTTTT ACTGTACCTT TTAGAATGTA AATTAATGCT
TGGAACTTGG CGTTTTGGTC GTCAAAGAAT TGTTTTCTAT TCTTAACAGG AATGGTTCAA TGTTATATAG AGCCTGAGAA
AAACCACATG GACGTGGCAG TATATAGGAA AATGTACATT TAATACATAG GCAGGACAAT AATATATGCA ATGGATTTTG
TAAATGTCTC AAACGAGTGA AATTTTCGTT TTTGGCTTAT AATTGTTGAA TTGTGGCCTG CAAGCTTGTT CAAAAAAAAC
CTGGCTGCAT AAGGGCTAAT CACAATGCCG 

>Vigan.10G116900.01
AGCCCTAATC GTAGGGGCGC GAAAGCTACA ATTCTGAAAA TGCAGGTTTC GAGTGCTATC AGTGACGTTT TGGTTGTGCT
TCCGCCTTCT GCATCTCTCA GACTACCGGA ATTTCGCCAC TTGCATGCTT TTGCCGTTTC TGATGCCAAG GGTTTTCTTT
CTGGTGGATT TCTTAAAAGC TGTCCTTCGT CTTACAATCC CAAGCACTAT AATGAATTCT ACAATTTCCG AGCTAGAGGT
TTAGTTGCAA GAGCATCAGC TAATTCAAGG GGCAATTCGG CGCCTTTTGC TCCTCTCCAA TTTGAGTCAC CAGTTGGTCA
GCTTTTGGAA CAAATTTCAA ATACCCATCC ACATCTACTG CCAGCGGCCA TTGATCAGCA ACTAGAGAAT CTTCAGACTG
CTAGAGATGC CCAGAAAGAA TCGTCTACTT CACCTGATGA TTCCCTTTAC AAGAGGATAG CTGAAGTCAA AGAGAAAGAG
AAGCGAACGA CATTGGAAGA GATCATGTAC TGCTCAATTG TGCATAAATT TTTAGAGAAC AACATTTCAA TGATTCCAAA
ACTAACAGCA ACATCAGATC CAACTGGTCG AGTGGATTTA TGGCCAAATC AAGAGCTGAA ACTAGAAGCT GTGCATTCTC
CAGAGGCATT CGAGATGATT CAGAGTCACT TATCTTTGGT ACTAGGAGAT CGGCTTGTGG GTCCCCTTCA GACAATTGTT
CAGATTAGTA AAATTAAACT GGGAAAGCTG TATGCTGCTT CCATAATGTA CGGATACTTT CTCAAACGAG TTGATGAACG
GTTTCAACTT GAGAGGTCAA TGGGAACCCT CCCCAAGGAT TTGGGAAAGA CTAAAAGTTT TGAGGAACCA TCACCAGGTA
TCAAGCTTTG GGATCCTGAT TCCTTGATCA CAGTTCAGGA TTACGACGAT GACAGTTATA GTGATAGTGA TTACATGGAT
ACAGAAGGCA AATCTTTCAG ACTAAGAGCT TATGTGATGC AGTTGGATGC AGAGACACTT CAGAGACTTG CTACTGTACG
ATCAAAGGAA GCTATATCAT TGATTGAAAA GCAAACTCAG GCCCTGTTCG GAAGGCCTGA TATCCGTGTG TCTGGTGATG
GTTCAATTGA AACATCCAAT GATGAATTGC TTTCACTCAC TTTCTCTGGC TTGACCATGC TAGTTTTGGA AGCTGTTGCT
TTTGGATCAT TCCTCTGGGA CAAGGAAAAC TATGTTGAAT CCAAGTACCC TTTTCTTAAT GAGTAGACTA GATCACTGTA
CCATTAGATT ATTTTTACTG TACCTTTTAG AATGTAAATT AATGCTTGGA ACTTGGCGTT TTGGTCGTCA AAGAATTGTT
TTCTATTCTT AACAGGAATG GTTCAATGTT ATATAGAGCC TGAGAAAAAC CACATGGACG TGGCAGTATA TAGGAAAATG
TACATTTAAT ACATAGGCAG GACAATAATA TATGCAATGG ATTTTGTAAA TGTCTCAAAC GAGTGAAATT TTCGTTTTTG
GCTTATAATT GTTGAATTGT GGCCTGCAAG CTTGTTCAAA AAAAACCTGG CTGCATAAGG GCTAATCACA ATGCCG

>Vigan.10G116900.01
ATGCAGGTTT CGAGTGCTAT CAGTGACGTT TTGGTTGTGC TTCCGCCTTC TGCATCTCTC AGACTACCGG AATTTCGCCA
CTTGCATGCT TTTGCCGTTT CTGATGCCAA GGGTTTTCTT TCTGGTGGAT TTCTTAAAAG CTGTCCTTCG TCTTACAATC
CCAAGCACTA TAATGAATTC TACAATTTCC GAGCTAGAGG TTTAGTTGCA AGAGCATCAG CTAATTCAAG GGGCAATTCG
GCGCCTTTTG CTCCTCTCCA ATTTGAGTCA CCAGTTGGTC AGCTTTTGGA ACAAATTTCA AATACCCATC CACATCTACT
GCCAGCGGCC ATTGATCAGC AACTAGAGAA TCTTCAGACT GCTAGAGATG CCCAGAAAGA ATCGTCTACT TCACCTGATG
ATTCCCTTTA CAAGAGGATA GCTGAAGTCA AAGAGAAAGA GAAGCGAACG ACATTGGAAG AGATCATGTA CTGCTCAATT
GTGCATAAAT TTTTAGAGAA CAACATTTCA ATGATTCCAA AACTAACAGC AACATCAGAT CCAACTGGTC GAGTGGATTT
ATGGCCAAAT CAAGAGCTGA AACTAGAAGC TGTGCATTCT CCAGAGGCAT TCGAGATGAT TCAGAGTCAC TTATCTTTGG
TACTAGGAGA TCGGCTTGTG GGTCCCCTTC AGACAATTGT TCAGATTAGT AAAATTAAAC TGGGAAAGCT GTATGCTGCT
TCCATAATGT ACGGATACTT TCTCAAACGA GTTGATGAAC GGTTTCAACT TGAGAGGTCA ATGGGAACCC TCCCCAAGGA
TTTGGGAAAG ACTAAAAGTT TTGAGGAACC ATCACCAGGT ATCAAGCTTT GGGATCCTGA TTCCTTGATC ACAGTTCAGG
ATTACGACGA TGACAGTTAT AGTGATAGTG ATTACATGGA TACAGAAGGC AAATCTTTCA GACTAAGAGC TTATGTGATG
CAGTTGGATG CAGAGACACT TCAGAGACTT GCTACTGTAC GATCAAAGGA AGCTATATCA TTGATTGAAA AGCAAACTCA
GGCCCTGTTC GGAAGGCCTG ATATCCGTGT GTCTGGTGAT GGTTCAATTG AAACATCCAA TGATGAATTG CTTTCACTCA
CTTTCTCTGG CTTGACCATG CTAGTTTTGG AAGCTGTTGC TTTTGGATCA TTCCTCTGGG ACAAGGAAAA CTATGTTGAA
TCCAAGTACC CTTTTCTTAA TGAGTAG

>Vigan.10G116900.01
MQVSSAISDV LVVLPPSASL RLPEFRHLHA FAVSDAKGFL SGGFLKSCPS SYNPKHYNEF YNFRARGLVA RASANSRGNS
APFAPLQFES PVGQLLEQIS NTHPHLLPAA IDQQLENLQT ARDAQKESST SPDDSLYKRI AEVKEKEKRT TLEEIMYCSI
VHKFLENNIS MIPKLTATSD PTGRVDLWPN QELKLEAVHS PEAFEMIQSH LSLVLGDRLV GPLQTIVQIS KIKLGKLYAA
SIMYGYFLKR VDERFQLERS MGTLPKDLGK TKSFEEPSPG IKLWDPDSLI TVQDYDDDSY SDSDYMDTEG KSFRLRAYVM
QLDAETLQRL ATVRSKEAIS LIEKQTQALF GRPDIRVSGD GSIETSNDEL LSLTFSGLTM LVLEAVAFGS FLWDKENYVE
SKYPFLNE*