GBrowse Details

Vigan.10G115300.01

Basic Information:
Name: Vigan.10G115300.01
Multiple alignment
Variant Information
Position: Chr10:16697271..16700410 (+ strand)
Length: 3140
Functional Information:
Description: Similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1. [V7CLM9, Phaseolus vulgaris]
GO: Cellular Component: oligosaccharyltransferase complex (GO:0008250)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579)
InterPro: DAD/Ost2 (IPR003038)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.07,23.60,36.70,22.45,47.11,79.01,54.32,26.49
Arabidopsis thaliana homolog: AT1G32210.1
Automatic updates:
Name: NM_001249297 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (DAD1), mRNA.
PubMed ID: 30800138 NCBI(pubmed)
Status: Known Variant
Name: NM_001249390 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306016 (LOC100306016), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:16697271..16697436 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr10:16697437..16697520 (+ strand)
Length: 84
Type: CDS
Position: Chr10:16697609..16697656 (+ strand)
Length: 48
Type: CDS
Position: Chr10:16698826..16698913 (+ strand)
Length: 88
Type: CDS
Position: Chr10:16699114..16699157 (+ strand)
Length: 44
Type: CDS
Position: Chr10:16699441..16699524 (+ strand)
Length: 84
Type: CDS
Position: Chr10:16699525..16700410 (+ strand)
Length: 886
Type: three_prime_UTR

>Vigan.10G115300.01 class=Sequence position=Chr10:16697271..16700410 (+ strand)
TTTTTTTTAA GTGGGTTAGG GCCTAAGCCC AAGAGACCTA AAAAATGGAA ATTTTGGGAA GTGATTTGGC AGAGACGACT
TGAGAGTAGT CTGCGTTGAA TTTTGGAGTT TAGAGAAGAG AGGAGGGTTT CTGTTGTGCA TTGCCAAATC GCGAAGATCT
GAGAGAATGG CGAGGTCTAG CAGCAAGGAT GCACAAGACC TTTTCCGCGC TCTTTGGTCT GCGTATGCTG CAACTCCTAC
GAATCTCAAG GTTCCTCTCT TTCCTTCTTC ATTCATTCAA TTAATCTCTA CACTCTTTTT TCCCTTTTTT CCAACCCCAA
TTCTGCTCTT TCTTTCAGAT CATTGACCTC TACGTCATGT TCGCTGTTTT CACCGCTCTC ATCCAGGTAC TTTCCACTAC
GTTCACTGCA TTTGTCTTTT TATCCTTTTT ATATTAACAT TTGCTTATCC AATTCCGCTC ATTTGAATAT CAAATTCAGC
TCCAGATCAG TATGCTTTTT ATTTGACTTG AAGGATTTGA GTTTTACGCT GTTATTGGCC ATGCTACCTT GGTATTTGAA
AATAAAATAT ATATTTGAAT TCAGAAGATC TAGGCCTTGT TCGTTTACTA TTTTCTAAAA TTTAATTGTT CTTGATCACA
TTTGAAATGT TTGTTCCTTG ATTACATTTC GGTTTTCTGG TTTATTTGAA ATGTAATCAA TGAACAAACA TGTTCTCTGT
TTTCACCTCT CATTCACTTG AACAAAGCAC TGAAGACATC AGAGGAAGAG AATGATAAAG CATCTCCCAG CTGTTTCTGT
TTTTGTGGTT TTCAGAACAC TTGTTTTGGG AGCAGCTTTT TAATTTAGAT TTTGGAAGAG AAATTGGTCG TTGAGTAGTG
TGGAAATCTT TAGAAAAACA GTTTTGAAAA TAATAAGAAT TGAAGAAATC ATACGTGCCT GGTCCGGGGA AGCAAATATT
TTTGGGTTAT TGATATGTGA GGTCGTTGGC GCTGTTTTTT TTATATTACT ATATATATCT AGCCATTTCT GCTCCTGCTT
GATGGCTGAT TTCTCCTTTT CTTAATAATG AAACCTCAGG GAATGATGTT GGTATTTGAT TAGCCACTGA TCTGTATTTA
CTGGATATAG AAGCAGAATT TGTTAATGGA AGACTCATTC TTCTCTTAAT AATCAAAGCT CAAGGATTGA TGTTGCTATT
CTATTAGCCT CTGATATCTG TTTACTGGAA TAGAAGCAGA ATTTGATTGC CTTGAATAAG GGTCTCTAAT GTGCAATCAC
AAATCCCTCC TATTATGACC TTAGAGAGGA GGGTTGCAAT AAGCTAGCTT GTGCCTTAGA TGTTCTGGTG AAACTGCACA
CGGGTGTGGA TCCAGGAAGT GCGTCCAGAA CTTTGTAATC CTGTTTCTTT ATTGGATGTT CTTGCTGCTT CTAGCTTTTA
CAAGAATAAT GTAGCGATTA AATTAATCTT TTTGATGAGG GTTCAAGTTG TTTTGTGGGC TTATGTTAAG TTGCATGTGT
CGAAAACCAA ATTCTTACAT TTTGTTTGTG AACAGGTAGT TTACATAGCT TTGGTGGGAT CATTTCCTTT TAACTCCTTC
CTATCAGGAG TGCTCTCTTG TGTTGGAACT GCTGTTCTTG CTGGTAAGTG TTCCAGGTCT AAATTTGTAG GGTAGCTTGT
TATGAATATA TGCACACACA AACACATTTT GGTATACTAT GGGCCCTCTG AGTCTACTAA GATACATTTG CACATTATGG
GACTTATATA CCTGCTACAA ACGGATGTAT AAATCTTGTT GTCTTCTTTC TGATCATTGT CTTCCCCCTT CATTGTGGAC
CAGTTTGTCT CAGGATCCAA GTGAATAAAG AGAATAAGGA ATTCAAGGTA AGATTTCTTG TCTTGTCTAT TTTTATCTTT
CAATTGATAT ATTATAATTG AGAACCTTCA ATTACCCTTG CAAGTTGCAA CCCATAAGAT TTTTTTGGTT TGGTTTCTTT
TATTCATCAT GTTATCTTTC AACAATCTGG TTAACTGATG TAGTTTTAAA CTAGGACTCT ACATCTTTAA CACGGAAAAT
CAAAACAAGA ATGAAATGAA TTCATATTTG TGTGTTTATT TGTTCACTTA ATATGTTCTT ACATGTATTT GACGTTTCAT
CGTACTGCAG GATCTTGCAC CTGAGCGAGC TTTTGCAGAT TTTGTTCTCT GTAATTTGGT GCTTCATTTG GTGATCATGA
ACTTCCTTGG TTAATTTTGG TTCATATGGC TGTTGTGGGT TTTGATTGAA CTCTTGGATA ATAAAAAGTA ATAGCAATAT
ACCCAGACTT TTGTAATAGT ATTTATAGAC AGTAACTTCC AACTAACTGC TTTAGGATTT TGTTGATTCC CCCATTCTGG
GGTCTCTGTT TTAATTGTAG AGATCTTTTT CATATTTTGA AATTTAAGCT ACTTTTGAAT GGTGAGTTAC AGAAGTTATT
ATTCTCATGG AAATCTAAAT CTGAGTACTA CCAAAAACAC TGCCTGTCTT TCTCAATCAC AATGAATCTA TACATTTTTT
GTGAGGGCAA ATTTTCAGGC ATGACGGGAC ACCAAGGAAT ACAGGATATA AAGGGTGAGA TGAGTGGGTA GATTAATTGA
TACATTGCAG CTGATGGCAA GGCCACGAGA AAGAGCAGAC GAAAAACTGT GTTGTGTTAT TACCCCATGG CATGATATAC
TGGTATGAAT ATGAAAACAA TAAGTTGCAT GTGCGACCAT GAACCAGGAT TTATGACACA TTACTGAGCA ATTCATCAGT
TCTTTTGTCC TTCACCTAAC CTCTTGTTTG CTCCCATGGT TTCTTTAATG TGTCAATTCC ACCATTGGCT TCTTCGCCAA
CTTTATCGCC AACTTTATAT TTCCCTATCG ATTCTAGTTG ATGAGATGTG GAGATCGCAA AAAACATTTT GTAGGTGTCA
GTCTAGCCTG ATCCTGGTAT CATCAAGCTG TTGTCATCAA TGAATTTTGT GAATTGTTTC ATCTATACAC AAAAGTTATT
GATTTGTCAA CTTCACGGGC GACAAGAAAG GCAAAGCAAT CTTGAACAGG GTTAGCCAGC TCCACTTTAA ATATAGTTTT
GGCGTCTTCC TCCTTAAATA 

>Vigan.10G115300.01
TTTTTTTTAA GTGGGTTAGG GCCTAAGCCC AAGAGACCTA AAAAATGGAA ATTTTGGGAA GTGATTTGGC AGAGACGACT
TGAGAGTAGT CTGCGTTGAA TTTTGGAGTT TAGAGAAGAG AGGAGGGTTT CTGTTGTGCA TTGCCAAATC GCGAAGATCT
GAGAGAATGG CGAGGTCTAG CAGCAAGGAT GCACAAGACC TTTTCCGCGC TCTTTGGTCT GCGTATGCTG CAACTCCTAC
GAATCTCAAG ATCATTGACC TCTACGTCAT GTTCGCTGTT TTCACCGCTC TCATCCAGGT AGTTTACATA GCTTTGGTGG
GATCATTTCC TTTTAACTCC TTCCTATCAG GAGTGCTCTC TTGTGTTGGA ACTGCTGTTC TTGCTGTTTG TCTCAGGATC
CAAGTGAATA AAGAGAATAA GGAATTCAAG GATCTTGCAC CTGAGCGAGC TTTTGCAGAT TTTGTTCTCT GTAATTTGGT
GCTTCATTTG GTGATCATGA ACTTCCTTGG TTAATTTTGG TTCATATGGC TGTTGTGGGT TTTGATTGAA CTCTTGGATA
ATAAAAAGTA ATAGCAATAT ACCCAGACTT TTGTAATAGT ATTTATAGAC AGTAACTTCC AACTAACTGC TTTAGGATTT
TGTTGATTCC CCCATTCTGG GGTCTCTGTT TTAATTGTAG AGATCTTTTT CATATTTTGA AATTTAAGCT ACTTTTGAAT
GGTGAGTTAC AGAAGTTATT ATTCTCATGG AAATCTAAAT CTGAGTACTA CCAAAAACAC TGCCTGTCTT TCTCAATCAC
AATGAATCTA TACATTTTTT GTGAGGGCAA ATTTTCAGGC ATGACGGGAC ACCAAGGAAT ACAGGATATA AAGGGTGAGA
TGAGTGGGTA GATTAATTGA TACATTGCAG CTGATGGCAA GGCCACGAGA AAGAGCAGAC GAAAAACTGT GTTGTGTTAT
TACCCCATGG CATGATATAC TGGTATGAAT ATGAAAACAA TAAGTTGCAT GTGCGACCAT GAACCAGGAT TTATGACACA
TTACTGAGCA ATTCATCAGT TCTTTTGTCC TTCACCTAAC CTCTTGTTTG CTCCCATGGT TTCTTTAATG TGTCAATTCC
ACCATTGGCT TCTTCGCCAA CTTTATCGCC AACTTTATAT TTCCCTATCG ATTCTAGTTG ATGAGATGTG GAGATCGCAA
AAAACATTTT GTAGGTGTCA GTCTAGCCTG ATCCTGGTAT CATCAAGCTG TTGTCATCAA TGAATTTTGT GAATTGTTTC
ATCTATACAC AAAAGTTATT GATTTGTCAA CTTCACGGGC GACAAGAAAG GCAAAGCAAT CTTGAACAGG GTTAGCCAGC
TCCACTTTAA ATATAGTTTT GGCGTCTTCC TCCTTAAATA 

>Vigan.10G115300.01
ATGGCGAGGT CTAGCAGCAA GGATGCACAA GACCTTTTCC GCGCTCTTTG GTCTGCGTAT GCTGCAACTC CTACGAATCT
CAAGATCATT GACCTCTACG TCATGTTCGC TGTTTTCACC GCTCTCATCC AGGTAGTTTA CATAGCTTTG GTGGGATCAT
TTCCTTTTAA CTCCTTCCTA TCAGGAGTGC TCTCTTGTGT TGGAACTGCT GTTCTTGCTG TTTGTCTCAG GATCCAAGTG
AATAAAGAGA ATAAGGAATT CAAGGATCTT GCACCTGAGC GAGCTTTTGC AGATTTTGTT CTCTGTAATT TGGTGCTTCA
TTTGGTGATC ATGAACTTCC TTGGTTAA

>Vigan.10G115300.01
MARSSSKDAQ DLFRALWSAY AATPTNLKII DLYVMFAVFT ALIQVVYIAL VGSFPFNSFL SGVLSCVGTA VLAVCLRIQV
NKENKEFKDL APERAFADFV LCNLVLHLVI MNFLG*