GBrowse Details

Vigan.10G112100.01

Basic Information:
Name: Vigan.10G112100.01
Multiple alignment
Variant Information
Position: Chr10:15324126..15327555 (- strand)
Length: 3430
Functional Information:
Description: Similar to zinc-binding protein. [Q0VJB4, Platanus acerifolia]
InterPro: Protein of unknown function DUF597 (IPR006734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:45.28,72.32,87.88,65.47,11.02,16.49,82.93,27.92
Arabidopsis thaliana homolog: AT4G17900.1
Automatic updates:
Name: NM_001301430 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PLATZ1 (LOC100797900), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:15324126..15325480 (- strand)
Length: 1355
Type: three_prime_UTR
Position: Chr10:15325481..15325714 (- strand)
Length: 234
Type: CDS
Position: Chr10:15326106..15326321 (- strand)
Length: 216
Type: CDS
Position: Chr10:15326736..15326933 (- strand)
Length: 198
Type: CDS
Position: Chr10:15327099..15327161 (- strand)
Length: 63
Type: CDS
Position: Chr10:15327162..15327555 (- strand)
Length: 394
Type: five_prime_UTR

>Vigan.10G112100.01 class=Sequence position=Chr10:15324126..15327555 (- strand)
AATAAATGAA GGTAGGAGAG TGATTAAAGA AAATGATAAG ATGAGAGAGA GAGAGAGAGA GTTGTGAAAA ATGAGATGTT
AATATTTAAT GAAGATTAAA AAGGAAAGAA GGAGGTGGGT TCCTTACGCC CAACGCATCT TGGTGGTTCG GGTTCGGAGC
TAGGTTTGGG TGAAGACTTT GTGCGGATAA GAACGACCCC TACCCTCACT CGTTTTCTCT CTCTCTAAAA CGCCATCATC
TACCGCTTCC AAGTCCTACA AGAACCCATT CCCTCCCTCA TAGCCCCCAC TCTTCTCCAC TTCTCAAACT TCAAACTTCA
AACTTCAAAC TTCATCACTC TTCCCTCAAA CCACAAATCA CATTCTCTCC AAACAAACTC TCCCTCCGAC CAACATGGCT
ATTGAAAACC ATGACACCAC TGTCAGAGAA ATCAAGCCCA AGAACCGGAG AATCATGGTA CGCAACCTTA CTAGATTCTT
TCAATCGACT TCCTCTTCAT GGCTCTAGCT AATGTTGTTT TCTAGTTTTT TTCTGGTAGA GGCATTGGGG TTCTGTCTTT
TGTTTTGTTC TTATTTGGAG GGTGATTAAA GTAAAGTTTT TGGTTTTGAT TGTTTTGAGC AGGGTGCTGG AGGTCCCGAT
GATGAGGACA ATAGATGGCC ACCATGGTTG AAGCCACTGC TCAAAGAGAG CTTCTTTGTT CAATGCAAGT TACATGCTGA
TTCTCACAAG AGTGAATGCA ACATGTATTG CTTGGACTGT ATGAACGGCC CTCTCTGCTC TCTCTGCCTC GCCCACCACA
AGGATCACCG TGCAATCCAG GTATGTCACA CCATTCATCA TTTTTTTGAA GTTTTGCACA AAAAGTTTCT ATCTGACACA
TTTTGGTTCA GGTCTCAAAC AGTCATTGTT TATCAAAATC ACCCCTTTTC CTTTTATGGG GATACTTAGA TTCTTTCCCA
ATTTTTTCTA GATTTTTGGC CAAAAGTCCC ACCTTTCCTT CCTTGCAAAA ATTTCGAACT ATCATTAATT GGTTTCTATT
TTCAATTTCT GTGGTCAATT GTCCCTCGTC CAACCGTTTC CTGCATTTAC CAACTCCTAG AATGGTGTGA AAGTAACCAC
ACGGTGGAAG AAAAAATGTC AGCTTTTGGT GGTTTTTAGT TTTTCTAAAC GCGTGTAGTG TGTCTCACGT TTAACCATTC
TCTTCTGATG TTTTTTTTTG TTAACTGTTG ACAGATTAGG AGGTCCTCAT ACCATGATGT GATCAGGGTT TCTGAGATTC
AGAAGGTGTT GGACATCACT GGTGTCCAAA CCTACATTAT CAACAGCGCA AGGGTGGTGT TTTTGAACGA GAGGCCTCAG
CCAAGGCCAG GAAAAGGGGT CACAAACACA TGTGAAGTCT GCGAGCGAAG CCTTCTTGAT TCTTACCGCT TCTGTTCTCT
TGGTTGCAAG GTATTCATAC TACCACCAAT GTCTTTCATT CCTTGTTTAA TCTTCTGACT TAGGAATTTT GCAAAAATGA
AAAAAGGCAA ACTGGGAAAA TTTGGACTTT GCTTTGCTTT CTTTTCAAGG AGCAAAGAAC ACCTTTTAGT TGAAATGAGT
TGACTTTTTA TCACAGCCAT GAAAATGGGT ACCCTTTGGT TCACGGGACT CTTGGATCCT TCAATTTATT CTTTTGCCTT
AATTTCCTCA GAGCATTAAA CAACCACCCG CGTTTGAAAT CTTGGGATTT GAATGTTGAC TTTTAACCTT TAATTAGTCT
AACTCTAATG TCCTCAACAA CCTTAATTTT CATGGTCCGT ATTAAATTTT TTTCATTAAT CAATGTGAAT ATGGATTGCA
GATTGTTGGG ACATCTAAGA ACCCACAGAA GAAGAAGAAG CAGTCAACGG CAATGACATC AGATTCTGAG GATTCATACA
GTAGCAACAG CGTCCATGGC CTGCAGAAAA ACTGCAAAGT TCAGAGCTTC ACACCGTCCA CTCCACCTCC AACTTCGGTT
AATTACAGAA CTGCCAAGAG AAGAAAGGGA ATACCGCACC GAGCCCCAAT GGGGGGACTA ATCATAGAGT ATTAGATTGT
GGGTATTTTT CGGTTATTTG CTATAATGCC CTTGGATATA AATATAATGC TAATGCAAGT GTTTCGACGA GGTTTCACCG
TTCCACTACT CGAGCTTTTC TAGGCCAGTA TTGGAACTGT CACCTTCTGT TCTTTAATGT TTCCTGTAGC AGTTTCTAGC
GTCTTGTATA TATATATATA TATAATATAT ATATATATAT ATATATATAT ATATATATAA AGTCCAATAG AACTGGAAAA
GGGTGAAGAA GAAGTAGTGA AAATAAGACA CCTGTGAAAT AGTTGATGGT GCAGTGATCA AAACAATGGC GTGTAGCAAA
ATAATAGGCA AGGCTCTTTT CGACCTAGCT AAGATGATGA TAAGGACTTA TAGGTTTGGT TTCTAAGGTA ATTATACCTA
AGTTTTGGGG TAGAGGATGT ACATAATGGC TAAGTGAGTT GGGGATGAGG ACAAATGAAA TGATGACAAT GTACTTCTTG
GAAAATAGGT GGTATGTCTA AATTATATGA GAATAGCACA ATAAAGATCT ATATTATTGC AAATACTTTT CTCCTTTTTT
ATTAATTAAT TATAATTTCC CAGCATTAAA ATGTTACCTT TGTCTAGTGG CGGTGAATGG TGGTAGTGGC GAAGGTAATA
CAAGCTTCGA ACGAGTGGGT CCACTGCAGC CGGCTTAAAT GGGGAGGGTT CGTCGGCGTT TACACGTGTC AAACGTTGAT
TGGGATTTGT GAAAGCCAAG TTGTATTGGT TCTCGAAAAC AGAGAATTGG TCAGCCGCCT CTATTAAAAA GAAAAACGAT
AATTCTATGC GCGGTTCCCT ACTCTTGGAT CTGACGGATG ACATTGAGCA CTATTGACGG CTTCGATCTC TTGATGTTCT
CTCGATCATG GGGGTAGATT CCCCGAGGCA GAAATCGTAG GGCTTGGAGT GTTTGATCGA ACTTTTGAGT AGTGGGCGTG
TAAAATGAAC GTATTATTAT TAGCTAAAGC ATAGATGGGG TTTGTCGTAA ACAGAAGAGG TTAGTGCGAC TTATTGGGAA
CTTTCTTGGC TTGGCAAATT GTTGATGGGT CTAATAATGA GATAATAAAG TTACAGCTAT TAGTGGAGTC ATTCTAAACG
TGTTTTTTTA CCGCAAGGAC TTCGATCCTA CTCCCACTGA ACTAAAGCAT TTTTGTTAAA CTTCCTGAAT TTGGAAAAGA
TATGTCATCC CCTGCAAAGA GAAACAAAAT AATCACGGTC AGAGAGACCC CCATTTTAAT TGTTCTAACG TGAAATGTTT
CCTGATGGAG AATGCCTAAG ATTTTAAGGA AACTGTTTTG ACTTTTCATT TTCAATTAAT GTTTCTTAGA 

>Vigan.10G112100.01
AATAAATGAA GGTAGGAGAG TGATTAAAGA AAATGATAAG ATGAGAGAGA GAGAGAGAGA GTTGTGAAAA ATGAGATGTT
AATATTTAAT GAAGATTAAA AAGGAAAGAA GGAGGTGGGT TCCTTACGCC CAACGCATCT TGGTGGTTCG GGTTCGGAGC
TAGGTTTGGG TGAAGACTTT GTGCGGATAA GAACGACCCC TACCCTCACT CGTTTTCTCT CTCTCTAAAA CGCCATCATC
TACCGCTTCC AAGTCCTACA AGAACCCATT CCCTCCCTCA TAGCCCCCAC TCTTCTCCAC TTCTCAAACT TCAAACTTCA
AACTTCAAAC TTCATCACTC TTCCCTCAAA CCACAAATCA CATTCTCTCC AAACAAACTC TCCCTCCGAC CAACATGGCT
ATTGAAAACC ATGACACCAC TGTCAGAGAA ATCAAGCCCA AGAACCGGAG AATCATGGGT GCTGGAGGTC CCGATGATGA
GGACAATAGA TGGCCACCAT GGTTGAAGCC ACTGCTCAAA GAGAGCTTCT TTGTTCAATG CAAGTTACAT GCTGATTCTC
ACAAGAGTGA ATGCAACATG TATTGCTTGG ACTGTATGAA CGGCCCTCTC TGCTCTCTCT GCCTCGCCCA CCACAAGGAT
CACCGTGCAA TCCAGATTAG GAGGTCCTCA TACCATGATG TGATCAGGGT TTCTGAGATT CAGAAGGTGT TGGACATCAC
TGGTGTCCAA ACCTACATTA TCAACAGCGC AAGGGTGGTG TTTTTGAACG AGAGGCCTCA GCCAAGGCCA GGAAAAGGGG
TCACAAACAC ATGTGAAGTC TGCGAGCGAA GCCTTCTTGA TTCTTACCGC TTCTGTTCTC TTGGTTGCAA GATTGTTGGG
ACATCTAAGA ACCCACAGAA GAAGAAGAAG CAGTCAACGG CAATGACATC AGATTCTGAG GATTCATACA GTAGCAACAG
CGTCCATGGC CTGCAGAAAA ACTGCAAAGT TCAGAGCTTC ACACCGTCCA CTCCACCTCC AACTTCGGTT AATTACAGAA
CTGCCAAGAG AAGAAAGGGA ATACCGCACC GAGCCCCAAT GGGGGGACTA ATCATAGAGT ATTAGATTGT GGGTATTTTT
CGGTTATTTG CTATAATGCC CTTGGATATA AATATAATGC TAATGCAAGT GTTTCGACGA GGTTTCACCG TTCCACTACT
CGAGCTTTTC TAGGCCAGTA TTGGAACTGT CACCTTCTGT TCTTTAATGT TTCCTGTAGC AGTTTCTAGC GTCTTGTATA
TATATATATA TATAATATAT ATATATATAT ATATATATAT ATATATATAA AGTCCAATAG AACTGGAAAA GGGTGAAGAA
GAAGTAGTGA AAATAAGACA CCTGTGAAAT AGTTGATGGT GCAGTGATCA AAACAATGGC GTGTAGCAAA ATAATAGGCA
AGGCTCTTTT CGACCTAGCT AAGATGATGA TAAGGACTTA TAGGTTTGGT TTCTAAGGTA ATTATACCTA AGTTTTGGGG
TAGAGGATGT ACATAATGGC TAAGTGAGTT GGGGATGAGG ACAAATGAAA TGATGACAAT GTACTTCTTG GAAAATAGGT
GGTATGTCTA AATTATATGA GAATAGCACA ATAAAGATCT ATATTATTGC AAATACTTTT CTCCTTTTTT ATTAATTAAT
TATAATTTCC CAGCATTAAA ATGTTACCTT TGTCTAGTGG CGGTGAATGG TGGTAGTGGC GAAGGTAATA CAAGCTTCGA
ACGAGTGGGT CCACTGCAGC CGGCTTAAAT GGGGAGGGTT CGTCGGCGTT TACACGTGTC AAACGTTGAT TGGGATTTGT
GAAAGCCAAG TTGTATTGGT TCTCGAAAAC AGAGAATTGG TCAGCCGCCT CTATTAAAAA GAAAAACGAT AATTCTATGC
GCGGTTCCCT ACTCTTGGAT CTGACGGATG ACATTGAGCA CTATTGACGG CTTCGATCTC TTGATGTTCT CTCGATCATG
GGGGTAGATT CCCCGAGGCA GAAATCGTAG GGCTTGGAGT GTTTGATCGA ACTTTTGAGT AGTGGGCGTG TAAAATGAAC
GTATTATTAT TAGCTAAAGC ATAGATGGGG TTTGTCGTAA ACAGAAGAGG TTAGTGCGAC TTATTGGGAA CTTTCTTGGC
TTGGCAAATT GTTGATGGGT CTAATAATGA GATAATAAAG TTACAGCTAT TAGTGGAGTC ATTCTAAACG TGTTTTTTTA
CCGCAAGGAC TTCGATCCTA CTCCCACTGA ACTAAAGCAT TTTTGTTAAA CTTCCTGAAT TTGGAAAAGA TATGTCATCC
CCTGCAAAGA GAAACAAAAT AATCACGGTC AGAGAGACCC CCATTTTAAT TGTTCTAACG TGAAATGTTT CCTGATGGAG
AATGCCTAAG ATTTTAAGGA AACTGTTTTG ACTTTTCATT TTCAATTAAT GTTTCTTAGA 

>Vigan.10G112100.01
ATGGCTATTG AAAACCATGA CACCACTGTC AGAGAAATCA AGCCCAAGAA CCGGAGAATC ATGGGTGCTG GAGGTCCCGA
TGATGAGGAC AATAGATGGC CACCATGGTT GAAGCCACTG CTCAAAGAGA GCTTCTTTGT TCAATGCAAG TTACATGCTG
ATTCTCACAA GAGTGAATGC AACATGTATT GCTTGGACTG TATGAACGGC CCTCTCTGCT CTCTCTGCCT CGCCCACCAC
AAGGATCACC GTGCAATCCA GATTAGGAGG TCCTCATACC ATGATGTGAT CAGGGTTTCT GAGATTCAGA AGGTGTTGGA
CATCACTGGT GTCCAAACCT ACATTATCAA CAGCGCAAGG GTGGTGTTTT TGAACGAGAG GCCTCAGCCA AGGCCAGGAA
AAGGGGTCAC AAACACATGT GAAGTCTGCG AGCGAAGCCT TCTTGATTCT TACCGCTTCT GTTCTCTTGG TTGCAAGATT
GTTGGGACAT CTAAGAACCC ACAGAAGAAG AAGAAGCAGT CAACGGCAAT GACATCAGAT TCTGAGGATT CATACAGTAG
CAACAGCGTC CATGGCCTGC AGAAAAACTG CAAAGTTCAG AGCTTCACAC CGTCCACTCC ACCTCCAACT TCGGTTAATT
ACAGAACTGC CAAGAGAAGA AAGGGAATAC CGCACCGAGC CCCAATGGGG GGACTAATCA TAGAGTATTA G

>Vigan.10G112100.01
MAIENHDTTV REIKPKNRRI MGAGGPDDED NRWPPWLKPL LKESFFVQCK LHADSHKSEC NMYCLDCMNG PLCSLCLAHH
KDHRAIQIRR SSYHDVIRVS EIQKVLDITG VQTYIINSAR VVFLNERPQP RPGKGVTNTC EVCERSLLDS YRFCSLGCKI
VGTSKNPQKK KKQSTAMTSD SEDSYSSNSV HGLQKNCKVQ SFTPSTPPPT SVNYRTAKRR KGIPHRAPMG GLIIEY*