GBrowse Details

Vigan.10G103600.01

Basic Information:
Name: Vigan.10G103600.01
Multiple alignment
Variant Information
Position: Chr10:12678125..12681715 (+ strand)
Length: 3591
Functional Information:
Description: Similar to C-4 methyl sterol oxidase, putative. [B9S3D6, Ricinus communis]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Fatty acid hydroxylase (IPR006694)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.03,3.62,13.18,22.49,129.45,25.75,13.58,19.79
Arabidopsis thaliana homolog: AT1G07420.1
Automatic updates:
Name: NM_001253115 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative methylsterol monooxygenase DDB_G0269788-like (LOC100816716), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254226 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative methylsterol monooxygenase DDB_G0269788-like (LOC100790183), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:12678125..12678196 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr10:12678197..12678226 (+ strand)
Length: 30
Type: CDS
Position: Chr10:12679022..12679159 (+ strand)
Length: 138
Type: CDS
Position: Chr10:12679875..12680020 (+ strand)
Length: 146
Type: CDS
Position: Chr10:12680152..12680271 (+ strand)
Length: 120
Type: CDS
Position: Chr10:12680357..12680569 (+ strand)
Length: 213
Type: CDS
Position: Chr10:12680664..12680744 (+ strand)
Length: 81
Type: CDS
Position: Chr10:12680901..12680988 (+ strand)
Length: 88
Type: CDS
Position: Chr10:12680989..12681715 (+ strand)
Length: 727
Type: three_prime_UTR

>Vigan.10G103600.01 class=Sequence position=Chr10:12678125..12681715 (+ strand)
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTA TCTCTCGCTT TCTCTCTCAC CGCCTCTCGT CTATGGCTTC
GCTTCTCGAA TCTGGCTGGC AGGTTCTCCC TTTTCATTTT CTTGAATTGT CGACGCTTTT TTGCTTCCGT TAGCTTTTCC
AATTCCACCG ATGGATTCGT CCTTTGATTT AATCCATGCT ACTTCTCTGG TTCTTGATGT AGATGAAGAG AGCGTGTACA
TTATTGGCTT TGTTTAGGAA TCATAAACCG TGCTGGCTTG ATTGATTGAT TTATTTATTG ATTGATTGTG TTCTTGATAC
TATGCCTAAT GATGCCTCAT TGCTGTATTT GGAACTTCAA TTGTTCCTGT AGATCATTGT AGTGTATTTC ATTTTTTAAA
TTATGCTTTT CACTTTCCGC TCCTGATTTG TGTTGCCTCG TCGTTATCGC CACGTGAAAT AGATTCCTGG AGTTTGTGCG
GACTGTGTTG ACGTATCCAG CGCTCTGTTT GATTTTTAGA TGCGTATGTG TTAATGTGTT AATTATTGAA AGAGTTTGGT
AATCCGCTTA TACTTATGAA ATATTCCCCT GCTTGTCATA TTAGGTTTGG AATATAAAAT GCATTTTTTC AATGTTCAAT
ATTTAGCGTG TAAAGCAAAT GTTAGTGAAG GTACCTTTCC TTGCTGGAAC ACATAATTTA GCATGTTCAC GGACGTCATT
TCTCTTGCAT TGTTGGTTTT TTGGCCTTTT GGCTTTAGAC TCTTTGCGGT CCTGTAGATT GCATGGTTAC ATAGTTTGTA
CTGTTTACCG AAATTGGAAT TGATGTCTGG TCCTTTTCTC TTTTTTGGGA ATACCATTCT CTCTCTTACT TAATCTCTCG
CTCTCTTTGT GCTGCAGTAC TTAATCACAC ATTTCAGTGA CTTTCAACTG GCGTGTTTGG GAAGTTTCTT TCTACATGAG
AGTGTTTTCT TCTTGTCTGG ACTTCCCTTT ATATGGCTTG AGAGGGCAGG GTGGATGAGC AATTACAAAA TTCAGGTCTG
CTCTTGTTGA TGGTTGTTGT TATCTCAGTG TTGGATGATT CCTTATTTTG TTATGGAAAA TGGAAATCCA GTACCTTTTG
CTGCTTTTCT ATTTAAAATG AGCATCAGTC ATGGCAAAAG TAAACTGCTC CAATATTGTT TGCTTTCACT TGATATACGT
GTTCCTTCCC TTGCACCTTG TATTCATTCA ATTATTTCCT TTACATTGTT TCCTTTGTGC TGAGAACAAT GCTGTCCTGG
TCTGTCCAAG TGAAGAATTC CCTAGAGATT TCGGTTTTCG ATTTCTTTTT CCTTATTTGT ATGTCTTACA TGTTTTGATG
TTATAACAAT GCTTTTTGGT ATTGACGCCC GCATTTGAAT TGGCTGATTC AAACAAAACA TTTTCATTCA AAATATGTAA
CACAATTTTC TTAGACATGT TCATGCCATG TTTAGATGAT GTATTGATTG AACCTCCCTG ATAATGGTAG AAATGATAAT
ATGTAGCTAC ATTTTTTTAT CAGCCGTAAA TATGCAAAAT TTAGTGAAAA GAAACTAGAA GTTAAATTTT GCCTGGTCTT
GATATGCAAT CAATTTTCTT GCTTTTATTG TATGGCACTT AGTATGGTTA CTCATTAGTC CTCTTTCTCT TGGTCCTTTT
TTCTGTACCT GTGGCCTCGT TCAATTAGTG AGTAAGATTT ACTGTTGTTG CTAATCTTCT TTTCTTGCAG GCAAAAAATA
ATAGTCCTGC AGCTCAGGAG AAATGCATTG TTCGCCTGTT GCTTTACCAT TTTGGTGTCA ATCTACCTGT TATGATTTTT
TCATATCCCG TTTTCTCATA CATGGGCATG CGGAGTAGTC TTCCCCTACC GTCCTGGTAC ATTCAGGTTC TTTTGAGCAC
TGTCATTATT CTAAACATAG GAGTCCTGTG TTAGGAGCTC TCAAAGTAAA TATGTCTGGA ATGTGCTTCT GTTAAGCTTA
TTTTGCAAGA TTGGATTTTT TCTGCAGGAA AACAGTTCTA ACTCAAATAA TCTTTTACTT CATTTTGGAG GACTTTATAT
TCTACTGGGG ACATAGAATA TTGCACACAA AATGGCTATA CAAGCATGTG CACAGTGTTC ATCACGAGTA AGTTTATTTT
TGTGTAATGG ATTTTACCTT TTATTATATT TCTTATCCAT AGACTACTAT AGGGTTTTGC AATATTGTGA AGGTATGCTA
CACCGTTTGG TCTTACTTCT GAATATGCTC ATCCTGCGGA GATACTTTTC CTTGGGTTTG CTACCATTTT TGGTCCTGCC
ATCACTGGGC CCCACTTGAT AACTCTCTGG TTATGGATGG TTCTGAGAGT CCTAGAGACA GTTGAGGCTC ATTGTGGATA
CCATTTTCCA TGGAGTCTTT CGAACTTCCT TCCGTTGTAT GGGGGGTGAG TGTGAATTTC CTTCTCCTGC TCTAGACACC
AGCCATTTGG TTTATTCTGC TATTGTGCCT ATCGTTAAAC TTTGTATCAT CACTTTCAGA GCTGATTTTC ACGACTATCA
TCACCGTTTG CTGTACACGA AGTCTGGAAA TTATTCTTCG ACTTTCACTT ACATGGACTG GTAAGTATTG AACATGTAGC
TCTTAAAGAA TTATTTTTGT TTCATGATGG TTAGAATCTA AAGTAGCTTA CTAACAAATT GTGAGGCATT AATGCCCTGA
AATTTTGGTA ACTGACATAC TGACAATGGT ACACGACATT TTTGCTGTCG TATTAGGATA TTTGGAACTG ATGTAGGCTA
CAGAAAGTTG AAAGCATTGA AGAGCACACA AATTGAAGAC AGTAGCGAGC TAAAGAACAA TTAGAATAAA ATTTTTGGGA
ATATCTGGGG ATGATTAGAA AGTTGATTTG CAACTTAAGG GCATATTTGA AAAAATGCCC TATCAAATCC TTATGTGTTC
TTGTGTTATT GTATTAGCTG GTCTTGTCTA CAAGGTGTTG GTGGCTTTTT CTGGACATTC ATGCCCCGTT ATAAAAAACT
TCATTAGTGA CAGTGATTTC AATTTTGGGA TGTTTCCCAT TGGTGATCCA ATATTCTTGA TGATGCCCAA ATTTCTCCTT
ACGCAGATGA ATGTTATTTG TTTGATATAA GTATCATTTG AATTGAATGG AGTAAGTGGC AATGGAGACA GAGAAGATAA
CCTGGTTCCC ACCGACAATC CTGGATAAAT TGATCCTTCT TATCGATTTG TTGATTTTCT TTTAGTCTTG AATGTTATTT
CTCACAATTG AAATAGGTGA GACCATGTGC CTGATAAAGT TTTTCTTCTC ACTAAAATAC TAGGAAAGAG CGCTAGTGGC
TGCTTAGCCT GCTTGGGTAT ACTCCTCAGA ATGAAAGCAA CTCCGGAGAA AAATGAACAC AAATTTGTTA TTTTTAACAA
ATGAACACAA TTAATTGTCT TTCTTTCTAG GGGTTTTTGT TAAGGTCACT ACTGCAACAT ATTTGCTTTG TTTACTCATG
ACAAGCTTTC AATTTGAATC ATTTGCTATC TACTATTAAG AAACAAAGTA TATTATTTAC AAATTTAGAA G

>Vigan.10G103600.01
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTA TCTCTCGCTT TCTCTCTCAC CGCCTCTCGT CTATGGCTTC
GCTTCTCGAA TCTGGCTGGC AGTACTTAAT CACACATTTC AGTGACTTTC AACTGGCGTG TTTGGGAAGT TTCTTTCTAC
ATGAGAGTGT TTTCTTCTTG TCTGGACTTC CCTTTATATG GCTTGAGAGG GCAGGGTGGA TGAGCAATTA CAAAATTCAG
GCAAAAAATA ATAGTCCTGC AGCTCAGGAG AAATGCATTG TTCGCCTGTT GCTTTACCAT TTTGGTGTCA ATCTACCTGT
TATGATTTTT TCATATCCCG TTTTCTCATA CATGGGCATG CGGAGTAGTC TTCCCCTACC GTCCTGGAAA ACAGTTCTAA
CTCAAATAAT CTTTTACTTC ATTTTGGAGG ACTTTATATT CTACTGGGGA CATAGAATAT TGCACACAAA ATGGCTATAC
AAGCATGTGC ACAGTGTTCA TCACGAGTAT GCTACACCGT TTGGTCTTAC TTCTGAATAT GCTCATCCTG CGGAGATACT
TTTCCTTGGG TTTGCTACCA TTTTTGGTCC TGCCATCACT GGGCCCCACT TGATAACTCT CTGGTTATGG ATGGTTCTGA
GAGTCCTAGA GACAGTTGAG GCTCATTGTG GATACCATTT TCCATGGAGT CTTTCGAACT TCCTTCCGTT GTATGGGGGA
GCTGATTTTC ACGACTATCA TCACCGTTTG CTGTACACGA AGTCTGGAAA TTATTCTTCG ACTTTCACTT ACATGGACTG
GATATTTGGA ACTGATGTAG GCTACAGAAA GTTGAAAGCA TTGAAGAGCA CACAAATTGA AGACAGTAGC GAGCTAAAGA
ACAATTAGAA TAAAATTTTT GGGAATATCT GGGGATGATT AGAAAGTTGA TTTGCAACTT AAGGGCATAT TTGAAAAAAT
GCCCTATCAA ATCCTTATGT GTTCTTGTGT TATTGTATTA GCTGGTCTTG TCTACAAGGT GTTGGTGGCT TTTTCTGGAC
ATTCATGCCC CGTTATAAAA AACTTCATTA GTGACAGTGA TTTCAATTTT GGGATGTTTC CCATTGGTGA TCCAATATTC
TTGATGATGC CCAAATTTCT CCTTACGCAG ATGAATGTTA TTTGTTTGAT ATAAGTATCA TTTGAATTGA ATGGAGTAAG
TGGCAATGGA GACAGAGAAG ATAACCTGGT TCCCACCGAC AATCCTGGAT AAATTGATCC TTCTTATCGA TTTGTTGATT
TTCTTTTAGT CTTGAATGTT ATTTCTCACA ATTGAAATAG GTGAGACCAT GTGCCTGATA AAGTTTTTCT TCTCACTAAA
ATACTAGGAA AGAGCGCTAG TGGCTGCTTA GCCTGCTTGG GTATACTCCT CAGAATGAAA GCAACTCCGG AGAAAAATGA
ACACAAATTT GTTATTTTTA ACAAATGAAC ACAATTAATT GTCTTTCTTT CTAGGGGTTT TTGTTAAGGT CACTACTGCA
ACATATTTGC TTTGTTTACT CATGACAAGC TTTCAATTTG AATCATTTGC TATCTACTAT TAAGAAACAA AGTATATTAT
TTACAAATTT AGAAG

>Vigan.10G103600.01
ATGGCTTCGC TTCTCGAATC TGGCTGGCAG TACTTAATCA CACATTTCAG TGACTTTCAA CTGGCGTGTT TGGGAAGTTT
CTTTCTACAT GAGAGTGTTT TCTTCTTGTC TGGACTTCCC TTTATATGGC TTGAGAGGGC AGGGTGGATG AGCAATTACA
AAATTCAGGC AAAAAATAAT AGTCCTGCAG CTCAGGAGAA ATGCATTGTT CGCCTGTTGC TTTACCATTT TGGTGTCAAT
CTACCTGTTA TGATTTTTTC ATATCCCGTT TTCTCATACA TGGGCATGCG GAGTAGTCTT CCCCTACCGT CCTGGAAAAC
AGTTCTAACT CAAATAATCT TTTACTTCAT TTTGGAGGAC TTTATATTCT ACTGGGGACA TAGAATATTG CACACAAAAT
GGCTATACAA GCATGTGCAC AGTGTTCATC ACGAGTATGC TACACCGTTT GGTCTTACTT CTGAATATGC TCATCCTGCG
GAGATACTTT TCCTTGGGTT TGCTACCATT TTTGGTCCTG CCATCACTGG GCCCCACTTG ATAACTCTCT GGTTATGGAT
GGTTCTGAGA GTCCTAGAGA CAGTTGAGGC TCATTGTGGA TACCATTTTC CATGGAGTCT TTCGAACTTC CTTCCGTTGT
ATGGGGGAGC TGATTTTCAC GACTATCATC ACCGTTTGCT GTACACGAAG TCTGGAAATT ATTCTTCGAC TTTCACTTAC
ATGGACTGGA TATTTGGAAC TGATGTAGGC TACAGAAAGT TGAAAGCATT GAAGAGCACA CAAATTGAAG ACAGTAGCGA
GCTAAAGAAC AATTAG

>Vigan.10G103600.01
MASLLESGWQ YLITHFSDFQ LACLGSFFLH ESVFFLSGLP FIWLERAGWM SNYKIQAKNN SPAAQEKCIV RLLLYHFGVN
LPVMIFSYPV FSYMGMRSSL PLPSWKTVLT QIIFYFILED FIFYWGHRIL HTKWLYKHVH SVHHEYATPF GLTSEYAHPA
EILFLGFATI FGPAITGPHL ITLWLWMVLR VLETVEAHCG YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFTY
MDWIFGTDVG YRKLKALKST QIEDSSELKN N*