GBrowse Details

Vigan.10G099900.01

Basic Information:
Name: Vigan.10G099900.01
Multiple alignment
Variant Information
Position: Chr10:12031851..12035104 (+ strand)
Length: 3254
Functional Information:
Description: Similar to Spermidine synthase. [H2EIY6, Medicago sativa]
GO: Molecular Function: catalytic activity (GO:0003824)
InterPro: Spermidine/spermine synthases family (IPR001045)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:114.26,230.59,69.15,40.58,62.23,98.25,59.49,100.64
Arabidopsis thaliana homolog: AT1G23820.1, AT1G70310.1
Automatic updates:
Name: NM_001252932 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max spermidine synthase 1-like (LOC100792107), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254596 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max spermidine synthase 1-like (LOC100790506), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:12031851..12032073 (+ strand)
Length: 223
Type: five_prime_UTR
Position: Chr10:12032074..12032266 (+ strand)
Length: 193
Type: CDS
Position: Chr10:12032769..12032845 (+ strand)
Length: 77
Type: CDS
Position: Chr10:12032948..12033070 (+ strand)
Length: 123
Type: CDS
Position: Chr10:12033545..12033649 (+ strand)
Length: 105
Type: CDS
Position: Chr10:12033900..12033972 (+ strand)
Length: 73
Type: CDS
Position: Chr10:12034066..12034137 (+ strand)
Length: 72
Type: CDS
Position: Chr10:12034228..12034423 (+ strand)
Length: 196
Type: CDS
Position: Chr10:12034542..12034662 (+ strand)
Length: 121
Type: CDS
Position: Chr10:12034755..12034820 (+ strand)
Length: 66
Type: CDS
Position: Chr10:12034821..12035104 (+ strand)
Length: 284
Type: three_prime_UTR

>Vigan.10G099900.01 class=Sequence position=Chr10:12031851..12035104 (+ strand)
GAAAAAAACA AATTTAAAAA CTTAATTTGA CTAATTTACA TTATATGATA TTATTAAATT AGTTTTTATT TGTTTTTATC
TCCAAAGTTA CTACTTTTTT ATTTTATCAT TTATCTCTAA AGTTACCACC TTTTATTTAA TCATTCATCT CCATAACACC
TATATAAGGA GTAGAAGAGG GCAACACTAG TTCGTGCGTT CCCTACTCAC TTCAAAGAAG AACATGGCTG CGGAGAACAA
CAACAACGTC GTTCAGGTTT CAGAGTTACC CGTCAAGAGA CCCAGAGAAG AAGAACAAGA CGGCGGAGAG AATGGCGTTC
CCGACACCCT TTCAACGCTC CCCAATCACT CTCAACACTC TGGTATCTCT GCGGTTATTC CTGGTTGGTT CTCTGAAATC
AGCCCAATGT GGCCTGGTCA GTAAAAACCC TCACTTTTCC TTCCCCTCTC TCTCTCTCAA CCTTCAATTT CAAGACTTTT
CATCGACCCC CTCTTTAATT GCTTACTGGG TATGAAATAG TTGCTTTTGT TGAATCGTTG TTTCGATTGT TCCAAGAGGG
TTGTCCTATA ACGGACTATA GAGTGTTTTC GAATCTGTGT CCTCTAGTGT TTTTCTTTTT TCCGGGTTTG GTTTTATTGG
GTAGGTTCTA GACTATGTTT TTGTTTTTCG GTTCTTTTGT TATGTCGCTA AATATTTTTT CTGATTTTAT GAGGAGGGAG
ACTTTGTTTT TTAAATCAAT GAGAAGTGCG CATATCTTGG TTAAAAGGAT GCATATGATG TCATGTCCGT AACAGAAGCA
CATCTTCAAG TTGTTGTTGT TGATGTTGTT GTTGTTGTTG TTGTTGTTGT TATGATGAAT GTTTGTGCTG CTGTTTTGTA
ATAACACACG TGAGATGGAA TCTGATTTTA ATTTGCAGGG GAGGCGCATT CTTTGAAGGT GGAAAAGGTT CTGTTTGAAG
GGAAGTCTGA CTATCAGAAT GTCATGGTCT TCCAGGTGAA TATGTACTTT CGGTTAAATT TGATAATTTT ATTGTTTCTG
CCCCCTTTTT GTGGTCTTTG TTTTATTTAA TGATGCATTC TATGATCTTT TTTGCAGTCG TCCACATATG GCAAGGTTCT
TGTTCTTGAT GGTGTCATTC AGCTTACAGA GAGGGATGAG TGTGCCTACC AAGAGATGAT AACACATCTT CCTCTTTGCT
CTATTCCAAA CCCCAAAAAG GTAATTTAGA GTATGACTGC TTTGATAATT TTGTTTAGTT TAACAAAATA TTTTCAGGAC
AATTGTGAGG AAGTGTGTAG CTTTTAGTCA TTGAATGTAA ACGTTTAGAC AGTGGGGAGG GCAGGGGTTT GTTAGAAGAA
TTTGTGAAAA ACAAAATGTT CATATTGATT TGTTTACTCA GATTGTTGAT GTGCCCATCA TCATGCTGAC TTAGGCTGCA
CTGCTGGTGT ATATTTAGCA TATCACTGTC TGCATTTATG TATTTGGTTG TTGAGTTTAC ATTTGATTAG AAATGTACAG
AATGGTATGT GTTGATGAGA GTAGGAAGAA TCATACTCGT GGAGTAAGGC ATTTGAGATA TTTCTTGAAC CATAAGCTAT
GATCTTTTTT CTGGAATATA ATGTTTGGAT AACTTTCTGT GTAATGTATG TTTGAAATTA ATTGTTCTTT TCCTTGCTTC
TTTTTTTCTG CTAGATTTTG GTTATTGGTG GAGGAGATGG TGGAGTCCTG CGTGAAATAG CACGCTATTC CTCAGTAGAG
AAGATAGACA TTTGCGAAAT AGACAAGATG GTTGTTGAGG TAAGTAATAG CCACAGAACT ATTATTTCCA ACCTCTAATC
AAAGCAGAAC ATTTTTAGTA GCAGATAATC CTGCATATAA TCTGCTTCTC TTGCTCTTTT CTAATTCTTG TAACTTGAGA
GAGGGGTTTT CTGCTTAAGT ATATTGGTTA TTGTCATACT TTTCCCCTGA TCTTCTTAAG CTAAATGTAT AATAACCTCT
ATTAGCAATA TGAGCTAAAT ATCACAATTG AAGTTGTTAC ACTTTGTAGG TCTCCAAACA ATTTTTTCCA GATGTAGCTG
TAGGTTTCGA GGATCCACGT GTGACACTTA ATATTGGTGA TGGTATGATT AGCTATTCTC CATAGTTTTT ATGTTCCTGA
ACTACTTTAC TGTTGAAGAT AACTTTTCTT GAGATGGTTT GTCTCTATGA TCTAGGAGTT GCATATTTGA AGGCTGTTGA
AGAAGGAACT TATGATGCAG TTATAGTGGA TTCATCCGAC CCTATTGGTA GGGTATACTG TAATTTCTTT GAACATTCCT
GGTCTTTTAC AGTTAATGAA TATGTTTCTA ATTGAGATTA TATTTAAAAT GTTTAAGGTC CTGCTCAAGA ACTGTTTGAA
AAGCCGTTTT TCGCATCGGT TGCAAGGGCT CTTCGTCCAG GAGGAGTTGT GTGTACTCAA GCAGAAAGTA TATGGCTTCA
TATGGATATC ATTGAGGGCA TTGTGGCCAA TTGTCGTCAG ATATTCAAAG GTTCTGTCAA CTATGCATGG ACCACTGTTC
CTACATACCC GAGGTATGCA TGCTGCTTCA AAATTTTGTT ATCTATTTTC CCATTTGCTT GACACTCTTC AAAACAAACA
TACCCTTATA ATTGTCCTTA TTGATGTTGC TTTGATTTTT TTCCATTTCA GTGGGATGAT TGGTTTTATG CTTTGTTCAA
CTGAGGGTCC TACTGTGGAC TTCAAGAATC CAGTGTATTC TATAGATGAG GATGATAGTC AAACTAGACC ATTGAAATTT
TACAACTCTG AGGTTTGTGC TCCAACCCTT TCACTTCAAC TACGAATTTA TTTTTCTCAT CTTCTTACTG AACTGTTATA
TTTTGTCTGC GTTTTTCACT TCAGCTTCAT TCTGCGGCTT TCTGTTTGCC ATCTTTTGCC AAGAGGGCTA TTTGTTCTAA
AACAAAGTGA GAACATTTTT CATGAGACTG AAGAAGCAAG TGTGGCTGCA GTGTTGCTTT TACTGGATTG GTCCATCTGT
CAATGAACTG TGGAATAAGT TAAGAGCTTC AAGATGATGA TGATGATGAC ATTTTGAAGA GCAACTTTTG TTTCATGAAA
TGACTTGGTA GATGACGGAT TCAGTTCCTA GTAATTTACG TTGTTGACAG TTTAGAACTT CAGTTGAAGA TTACTTTTTG
TTTAATGCGT ATGTTTTTAT CCCTTTGAAG TTAGTACCTT TTAGTAGTTA GTAT

>Vigan.10G099900.01
GAAAAAAACA AATTTAAAAA CTTAATTTGA CTAATTTACA TTATATGATA TTATTAAATT AGTTTTTATT TGTTTTTATC
TCCAAAGTTA CTACTTTTTT ATTTTATCAT TTATCTCTAA AGTTACCACC TTTTATTTAA TCATTCATCT CCATAACACC
TATATAAGGA GTAGAAGAGG GCAACACTAG TTCGTGCGTT CCCTACTCAC TTCAAAGAAG AACATGGCTG CGGAGAACAA
CAACAACGTC GTTCAGGTTT CAGAGTTACC CGTCAAGAGA CCCAGAGAAG AAGAACAAGA CGGCGGAGAG AATGGCGTTC
CCGACACCCT TTCAACGCTC CCCAATCACT CTCAACACTC TGGTATCTCT GCGGTTATTC CTGGTTGGTT CTCTGAAATC
AGCCCAATGT GGCCTGGGGA GGCGCATTCT TTGAAGGTGG AAAAGGTTCT GTTTGAAGGG AAGTCTGACT ATCAGAATGT
CATGGTCTTC CAGTCGTCCA CATATGGCAA GGTTCTTGTT CTTGATGGTG TCATTCAGCT TACAGAGAGG GATGAGTGTG
CCTACCAAGA GATGATAACA CATCTTCCTC TTTGCTCTAT TCCAAACCCC AAAAAGATTT TGGTTATTGG TGGAGGAGAT
GGTGGAGTCC TGCGTGAAAT AGCACGCTAT TCCTCAGTAG AGAAGATAGA CATTTGCGAA ATAGACAAGA TGGTTGTTGA
GGTCTCCAAA CAATTTTTTC CAGATGTAGC TGTAGGTTTC GAGGATCCAC GTGTGACACT TAATATTGGT GATGGAGTTG
CATATTTGAA GGCTGTTGAA GAAGGAACTT ATGATGCAGT TATAGTGGAT TCATCCGACC CTATTGGTCC TGCTCAAGAA
CTGTTTGAAA AGCCGTTTTT CGCATCGGTT GCAAGGGCTC TTCGTCCAGG AGGAGTTGTG TGTACTCAAG CAGAAAGTAT
ATGGCTTCAT ATGGATATCA TTGAGGGCAT TGTGGCCAAT TGTCGTCAGA TATTCAAAGG TTCTGTCAAC TATGCATGGA
CCACTGTTCC TACATACCCG AGTGGGATGA TTGGTTTTAT GCTTTGTTCA ACTGAGGGTC CTACTGTGGA CTTCAAGAAT
CCAGTGTATT CTATAGATGA GGATGATAGT CAAACTAGAC CATTGAAATT TTACAACTCT GAGCTTCATT CTGCGGCTTT
CTGTTTGCCA TCTTTTGCCA AGAGGGCTAT TTGTTCTAAA ACAAAGTGAG AACATTTTTC ATGAGACTGA AGAAGCAAGT
GTGGCTGCAG TGTTGCTTTT ACTGGATTGG TCCATCTGTC AATGAACTGT GGAATAAGTT AAGAGCTTCA AGATGATGAT
GATGATGACA TTTTGAAGAG CAACTTTTGT TTCATGAAAT GACTTGGTAG ATGACGGATT CAGTTCCTAG TAATTTACGT
TGTTGACAGT TTAGAACTTC AGTTGAAGAT TACTTTTTGT TTAATGCGTA TGTTTTTATC CCTTTGAAGT TAGTACCTTT
TAGTAGTTAG TAT

>Vigan.10G099900.01
ATGGCTGCGG AGAACAACAA CAACGTCGTT CAGGTTTCAG AGTTACCCGT CAAGAGACCC AGAGAAGAAG AACAAGACGG
CGGAGAGAAT GGCGTTCCCG ACACCCTTTC AACGCTCCCC AATCACTCTC AACACTCTGG TATCTCTGCG GTTATTCCTG
GTTGGTTCTC TGAAATCAGC CCAATGTGGC CTGGGGAGGC GCATTCTTTG AAGGTGGAAA AGGTTCTGTT TGAAGGGAAG
TCTGACTATC AGAATGTCAT GGTCTTCCAG TCGTCCACAT ATGGCAAGGT TCTTGTTCTT GATGGTGTCA TTCAGCTTAC
AGAGAGGGAT GAGTGTGCCT ACCAAGAGAT GATAACACAT CTTCCTCTTT GCTCTATTCC AAACCCCAAA AAGATTTTGG
TTATTGGTGG AGGAGATGGT GGAGTCCTGC GTGAAATAGC ACGCTATTCC TCAGTAGAGA AGATAGACAT TTGCGAAATA
GACAAGATGG TTGTTGAGGT CTCCAAACAA TTTTTTCCAG ATGTAGCTGT AGGTTTCGAG GATCCACGTG TGACACTTAA
TATTGGTGAT GGAGTTGCAT ATTTGAAGGC TGTTGAAGAA GGAACTTATG ATGCAGTTAT AGTGGATTCA TCCGACCCTA
TTGGTCCTGC TCAAGAACTG TTTGAAAAGC CGTTTTTCGC ATCGGTTGCA AGGGCTCTTC GTCCAGGAGG AGTTGTGTGT
ACTCAAGCAG AAAGTATATG GCTTCATATG GATATCATTG AGGGCATTGT GGCCAATTGT CGTCAGATAT TCAAAGGTTC
TGTCAACTAT GCATGGACCA CTGTTCCTAC ATACCCGAGT GGGATGATTG GTTTTATGCT TTGTTCAACT GAGGGTCCTA
CTGTGGACTT CAAGAATCCA GTGTATTCTA TAGATGAGGA TGATAGTCAA ACTAGACCAT TGAAATTTTA CAACTCTGAG
CTTCATTCTG CGGCTTTCTG TTTGCCATCT TTTGCCAAGA GGGCTATTTG TTCTAAAACA AAGTGA

>Vigan.10G099900.01
MAAENNNNVV QVSELPVKRP REEEQDGGEN GVPDTLSTLP NHSQHSGISA VIPGWFSEIS PMWPGEAHSL KVEKVLFEGK
SDYQNVMVFQ SSTYGKVLVL DGVIQLTERD ECAYQEMITH LPLCSIPNPK KILVIGGGDG GVLREIARYS SVEKIDICEI
DKMVVEVSKQ FFPDVAVGFE DPRVTLNIGD GVAYLKAVEE GTYDAVIVDS SDPIGPAQEL FEKPFFASVA RALRPGGVVC
TQAESIWLHM DIIEGIVANC RQIFKGSVNY AWTTVPTYPS GMIGFMLCST EGPTVDFKNP VYSIDEDDSQ TRPLKFYNSE
LHSAAFCLPS FAKRAICSKT K*