GBrowse Details

Vigan.10G076000.01

Basic Information:
Name: Vigan.10G076000.01
Multiple alignment
Variant Information
Position: Chr10:8643778..8646084 (- strand)
Length: 2307
Functional Information:
Description: Similar to MYB transcription factor MYB138. [Q0PJI4, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: SANT/Myb domain (IPR001005)
Zinc finger, CCHC-type (IPR001878)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,0.56,29.20,150.96,49.59,29.30,1 3.62,90.87
Arabidopsis thaliana homolog: AT1G70000.1
Automatic updates:
Name: KT031178 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_87 MYB/HD-like transcription factor (Glyma02g03020.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_86 MYB/HD-like transcription factor (Glyma01g04530.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031248 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_26 MYB/HD-like transcription factor (Glyma01g04530.1_like1) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031249 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_27 MYB/HD-like transcription factor (Glyma01g04530.1_like2) mRNA, complete cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001317417 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor MYB1R1 (LOC780554), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:8643778..8644330 (- strand)
Length: 553
Type: three_prime_UTR
Position: Chr10:8644331..8644762 (- strand)
Length: 432
Type: CDS
Position: Chr10:8645026..8645234 (- strand)
Length: 209
Type: CDS
Position: Chr10:8645359..8645629 (- strand)
Length: 271
Type: CDS
Position: Chr10:8645630..8646084 (- strand)
Length: 455
Type: five_prime_UTR

>Vigan.10G076000.01 class=Sequence position=Chr10:8643778..8646084 (- strand)
GCTTACCGAG GCAAGCCAAA CATGGCACAG TATTTGACGG TCCTGATTGA TGGATTCTGT CCCCTCAACG AAAAATGACC
ACCAATACCA TGACGACACC AATCGACGTT CATAATAATT TCTAGTGCCA AACAACCCCT CTTTTGTTTC CCACCGCATA
GTATTAGTAA GTAATACTAG TAACCCTAGT AGTAACTTTA GTGTACGGCA GCGCCTACCA CAAACACCAA TGCCATCACC
ACACTTTCAA CACTTCAACC CTACCAAAGC AAAACTCTCT ATATATCACC CAAACATCCC TATGTCTCTT TCTTTCTCTC
CATCACAAAC ACAAACCCAA CAACACCCTT TCTTCTTTCA AACCTTTTAT TTCTTCACCT TATATTATCA CATCTATTAA
TCTTCCACAC ACATATCATA TTCATATAGC CATATTTATT GCATGGACTG TTGAGATGTC TCGCACGTGC TCACAGTGCG
GGAACAACGG CCACAACTCA AGGACATGCA CCGACGGTGG TGCTGCTGTT TCCGGCGGCT CGTCTCCCCG GGAGAGCGGC
TTCATGCTGT TTGGCGTGCG AGTCACCGAG GGAATTTCCT CCTTCAGGAA GAGCGCTAGC ATGAACAACC TCTCTCAATA
CGACGCCGAT TCCAACACAG CCGACGCCGG GTACGCCTCC GACGACGTCG TTCACGCCTC CGGTCGCGCG CGCGAGCGCA
AGCGAGGTCA GTAATTAACC GATTAACAAT CATTAACGAT TTCTTTAATT GTTCTGATTT GTACTTTGGC GTTGTTTGGT
TTGAGAGACA AATTAATTGA TCGATTGAGT TTTTGGATTG GTGAACAAAG GTGTTCCTTG GACGGAGGAA GAGCACAGAC
TGTTCCTGTT AGGGTTGCAC AAAGTTGGAA AGGGAGATTG GAGAGGAATT TCTAGAAACT TCGTCAAAAC TCGCACGCCA
ACTCAGGTCG CCAGTCACGC TCAGAAGTAC TTCCTCCGTC GCCACAACCA GAACCGCCGC CGCCGGAGAT CTAGCCTCTT
TGACATCACT ACCGATACGG TACTTTCAGT TTCATTTTCT TCTTTTGCAC AATAAATTGA TGTTAATTTC TGTTGGCATC
CATCTAAATG TCATTAGATT TTATTTCTAA TTTATTTTAA ATTAAATAAC TGGATTGACA ATTTCAAAAC AGTTATAAAC
TAACTCCAAA ATGAAATAAT TAATTGATTA AAACAAACTA GAGATTCATT TAAATATTCT TAAATAATTT GAGAGTAATT
AGTAATTTTA ACGTTTAATT GATTTTTATT TTGGAATTCC AGGTGATGGA GTCTTCTACT ATAATGGAAG AAGAACAAGT
TCAGCAGGAA ACGGCGGCGC TGCCTATCCC CGCAGCATAT CCGCCGTCGC ATTACGGCGG TTTGCCTGGC GCAGGTTTTC
CGATGAGTCT ATCTCCAGTG GTTTTGCCGG CGAGCAGTGA GAGGCTAGCC AAGCCGATTA GGCCGACGCC GATTTTGCCG
GTCCCACCGT CGTCGAAGAT GGCTAGTTTG AACTTGAAAG AGAAAGCTTC TCCGACTAAT CTCATAGAGC CTTTACCGTT
GTCGTTGAAT CTTCCATCGC CGACGCCGCG GTCACAGGAT CAGTCACCGG CGAGTAGTGA CCACTCATCG CCGTCGTCGT
CATCATCGGC TTTTCAGGTG ATTTCTGCTG GGAAGTTCGG CGGCGGTGGG GACAGTATCA TCAGCGTTGC TTGAAAAGAA
GGAAACCTAA AAAAATTAGC GTCATTAAGT TACTATTAAG CAAGTACGGT CGTGGATAAT TTGAATATGT AAATTAATTT
TACAAAGTCG GAGATGTATC CAAGAGGGGG AAAATTGAAG ATATGTGTTG GAGATTTATT GATTACTAAA GATAAAGATA
ATATCGGTAG GAGGGAGGGG ATATTTGAAT CAATGAGTAT GATCATAATT ATGATTTGGA GAAAAAAAAA AAGAAAAAAA
AGAAGAGTAT GTTAGGCTAT ATAGGTAATT AGTAAATTAA ATTGCTGGTT TGCATTGAAT GTACAGGTTT AGAAATGAAT
TAGATAGATG GGTTGTCACA TTCTCTAGCT GTCGGGGGAT TCTTGTTTCT ATTTGTATGG GGGAGTGTGA CATTGAAATG
ATAGGGCACC AGGTACTCTT TATATGCTAT TGGTCTCGCT CTGTATTGCA TTGCCATTGG GGTCATTAAA ATATCACTGC
TAGCTTAGAC AAACGAATAT ATTATGCTCA CCCTTCAATT CTTAAGCACA TGCCATTCAA TCACCAT

>Vigan.10G076000.01
GCTTACCGAG GCAAGCCAAA CATGGCACAG TATTTGACGG TCCTGATTGA TGGATTCTGT CCCCTCAACG AAAAATGACC
ACCAATACCA TGACGACACC AATCGACGTT CATAATAATT TCTAGTGCCA AACAACCCCT CTTTTGTTTC CCACCGCATA
GTATTAGTAA GTAATACTAG TAACCCTAGT AGTAACTTTA GTGTACGGCA GCGCCTACCA CAAACACCAA TGCCATCACC
ACACTTTCAA CACTTCAACC CTACCAAAGC AAAACTCTCT ATATATCACC CAAACATCCC TATGTCTCTT TCTTTCTCTC
CATCACAAAC ACAAACCCAA CAACACCCTT TCTTCTTTCA AACCTTTTAT TTCTTCACCT TATATTATCA CATCTATTAA
TCTTCCACAC ACATATCATA TTCATATAGC CATATTTATT GCATGGACTG TTGAGATGTC TCGCACGTGC TCACAGTGCG
GGAACAACGG CCACAACTCA AGGACATGCA CCGACGGTGG TGCTGCTGTT TCCGGCGGCT CGTCTCCCCG GGAGAGCGGC
TTCATGCTGT TTGGCGTGCG AGTCACCGAG GGAATTTCCT CCTTCAGGAA GAGCGCTAGC ATGAACAACC TCTCTCAATA
CGACGCCGAT TCCAACACAG CCGACGCCGG GTACGCCTCC GACGACGTCG TTCACGCCTC CGGTCGCGCG CGCGAGCGCA
AGCGAGGTGT TCCTTGGACG GAGGAAGAGC ACAGACTGTT CCTGTTAGGG TTGCACAAAG TTGGAAAGGG AGATTGGAGA
GGAATTTCTA GAAACTTCGT CAAAACTCGC ACGCCAACTC AGGTCGCCAG TCACGCTCAG AAGTACTTCC TCCGTCGCCA
CAACCAGAAC CGCCGCCGCC GGAGATCTAG CCTCTTTGAC ATCACTACCG ATACGGTGAT GGAGTCTTCT ACTATAATGG
AAGAAGAACA AGTTCAGCAG GAAACGGCGG CGCTGCCTAT CCCCGCAGCA TATCCGCCGT CGCATTACGG CGGTTTGCCT
GGCGCAGGTT TTCCGATGAG TCTATCTCCA GTGGTTTTGC CGGCGAGCAG TGAGAGGCTA GCCAAGCCGA TTAGGCCGAC
GCCGATTTTG CCGGTCCCAC CGTCGTCGAA GATGGCTAGT TTGAACTTGA AAGAGAAAGC TTCTCCGACT AATCTCATAG
AGCCTTTACC GTTGTCGTTG AATCTTCCAT CGCCGACGCC GCGGTCACAG GATCAGTCAC CGGCGAGTAG TGACCACTCA
TCGCCGTCGT CGTCATCATC GGCTTTTCAG GTGATTTCTG CTGGGAAGTT CGGCGGCGGT GGGGACAGTA TCATCAGCGT
TGCTTGAAAA GAAGGAAACC TAAAAAAATT AGCGTCATTA AGTTACTATT AAGCAAGTAC GGTCGTGGAT AATTTGAATA
TGTAAATTAA TTTTACAAAG TCGGAGATGT ATCCAAGAGG GGGAAAATTG AAGATATGTG TTGGAGATTT ATTGATTACT
AAAGATAAAG ATAATATCGG TAGGAGGGAG GGGATATTTG AATCAATGAG TATGATCATA ATTATGATTT GGAGAAAAAA
AAAAAGAAAA AAAAGAAGAG TATGTTAGGC TATATAGGTA ATTAGTAAAT TAAATTGCTG GTTTGCATTG AATGTACAGG
TTTAGAAATG AATTAGATAG ATGGGTTGTC ACATTCTCTA GCTGTCGGGG GATTCTTGTT TCTATTTGTA TGGGGGAGTG
TGACATTGAA ATGATAGGGC ACCAGGTACT CTTTATATGC TATTGGTCTC GCTCTGTATT GCATTGCCAT TGGGGTCATT
AAAATATCAC TGCTAGCTTA GACAAACGAA TATATTATGC TCACCCTTCA ATTCTTAAGC ACATGCCATT CAATCACCAT

>Vigan.10G076000.01
ATGTCTCGCA CGTGCTCACA GTGCGGGAAC AACGGCCACA ACTCAAGGAC ATGCACCGAC GGTGGTGCTG CTGTTTCCGG
CGGCTCGTCT CCCCGGGAGA GCGGCTTCAT GCTGTTTGGC GTGCGAGTCA CCGAGGGAAT TTCCTCCTTC AGGAAGAGCG
CTAGCATGAA CAACCTCTCT CAATACGACG CCGATTCCAA CACAGCCGAC GCCGGGTACG CCTCCGACGA CGTCGTTCAC
GCCTCCGGTC GCGCGCGCGA GCGCAAGCGA GGTGTTCCTT GGACGGAGGA AGAGCACAGA CTGTTCCTGT TAGGGTTGCA
CAAAGTTGGA AAGGGAGATT GGAGAGGAAT TTCTAGAAAC TTCGTCAAAA CTCGCACGCC AACTCAGGTC GCCAGTCACG
CTCAGAAGTA CTTCCTCCGT CGCCACAACC AGAACCGCCG CCGCCGGAGA TCTAGCCTCT TTGACATCAC TACCGATACG
GTGATGGAGT CTTCTACTAT AATGGAAGAA GAACAAGTTC AGCAGGAAAC GGCGGCGCTG CCTATCCCCG CAGCATATCC
GCCGTCGCAT TACGGCGGTT TGCCTGGCGC AGGTTTTCCG ATGAGTCTAT CTCCAGTGGT TTTGCCGGCG AGCAGTGAGA
GGCTAGCCAA GCCGATTAGG CCGACGCCGA TTTTGCCGGT CCCACCGTCG TCGAAGATGG CTAGTTTGAA CTTGAAAGAG
AAAGCTTCTC CGACTAATCT CATAGAGCCT TTACCGTTGT CGTTGAATCT TCCATCGCCG ACGCCGCGGT CACAGGATCA
GTCACCGGCG AGTAGTGACC ACTCATCGCC GTCGTCGTCA TCATCGGCTT TTCAGGTGAT TTCTGCTGGG AAGTTCGGCG
GCGGTGGGGA CAGTATCATC AGCGTTGCTT GA

>Vigan.10G076000.01
MSRTCSQCGN NGHNSRTCTD GGAAVSGGSS PRESGFMLFG VRVTEGISSF RKSASMNNLS QYDADSNTAD AGYASDDVVH
ASGRARERKR GVPWTEEEHR LFLLGLHKVG KGDWRGISRN FVKTRTPTQV ASHAQKYFLR RHNQNRRRRR SSLFDITTDT
VMESSTIMEE EQVQQETAAL PIPAAYPPSH YGGLPGAGFP MSLSPVVLPA SSERLAKPIR PTPILPVPPS SKMASLNLKE
KASPTNLIEP LPLSLNLPSP TPRSQDQSPA SSDHSSPSSS SSAFQVISAG KFGGGGDSII SVA*