GBrowse Details

Vigan.10G072500.01

Basic Information:
Name: Vigan.10G072500.01
Multiple alignment
Variant Information
Position: Chr10:8285869..8286924 (+ strand)
Length: 1056
Functional Information:
Description: Similar to Thioredoxin. [V7CGU6, Phaseolus vulgaris]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.05,54.37,0.33,25.19,63.22,43.40,7.74
Automatic updates:
Name: NM_001249123 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TRX domain-containing protein (LOC100527691), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr10:8285869..8285919 (+ strand)
Length: 51
Type: five_prime_UTR
Position: Chr10:8285920..8286048 (+ strand)
Length: 129
Type: CDS
Position: Chr10:8286150..8286272 (+ strand)
Length: 123
Type: CDS
Position: Chr10:8286498..8286629 (+ strand)
Length: 132
Type: CDS
Position: Chr10:8286630..8286924 (+ strand)
Length: 295
Type: three_prime_UTR

>Vigan.10G072500.01 class=Sequence position=Chr10:8285869..8286924 (+ strand)
CTAATCTCCA ACCAATTTTG TTTTTTCATT CCACAAAGCT GAATTAGCAT CATGGGAGCC AACTTTTCGA CTTTTGAGTT
TGTGGAAAAA TCATCAGACT CATCATCGTT GATCCTCACC TTCCATTCCA CTGCTAAATG GAACGCACAC TTTCATGCCT
CCAAAGAAAC TAACAAGCTC GTAAGTTTCA TATAAATTCA GCTACAACTT CCTTAAATTA TCAAAATTAT GGCTTAATTA
CATCAGACAA TTCATTAATG CTGTTTTTTA ATTTCTTAAA GTTGGTCATC GACTTCACTG CTACGTGGTG TGGACCTTGC
AAAACCATGG ACCCAGTAAT AAAAGAATTT GCTGCAAAAT ACACAGACGT GGAGTTCATC AAGATTGATG TGGATGAGTT
GATGGTATGA TGCACATAAT TTCTTTCATA ACATATATAT AACTTTATTC GAACTTAATT TTACTTACAG AATTTAATTT
TCGTTGATAA TATAATTAAC AATCTGTTTT ACAGCATGAT CTATGAACAC ATAGTAATAT AAAAATAAGT GCTATATGAA
CGATTTTGTT TAACAGAAAC ATATTTATGA TACACTGATG GAAATATGTG TATATATACA TGGAAACAGG AGGTCGCACA
GGCTTTCCAG GTGCAAACAA TGCCAACATT TATACTGATA AAGAAAGGGA AAGTAGTGGA AAAGGTTGTG GGAGCCAAAA
AGGAGGAGTT GCAGAAGCTC ATTCAGAAAC GCAGGAATTG ATGAGTGCAT GCTTGCATCT ATCTCGTACT GTAGTAATAA
AGTACTTTGG GATGACTTTG GATTATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATGT
ATGTATGTAT ATGTATATAT ACATAAAAAG AGAGAGATAA AGTGTTGCTG TCTGCCATGA GACTGACAGT GAAGTGTGTA
AATCTAGCTG TAGCATATGT CGTGTATGCA TGCATGCTTA TTTTAATTAT AAGTTGTATC TTGTTATATA TGTTTAAATG
GTTCTTTTAT GTTAAA

>Vigan.10G072500.01
CTAATCTCCA ACCAATTTTG TTTTTTCATT CCACAAAGCT GAATTAGCAT CATGGGAGCC AACTTTTCGA CTTTTGAGTT
TGTGGAAAAA TCATCAGACT CATCATCGTT GATCCTCACC TTCCATTCCA CTGCTAAATG GAACGCACAC TTTCATGCCT
CCAAAGAAAC TAACAAGCTC TTGGTCATCG ACTTCACTGC TACGTGGTGT GGACCTTGCA AAACCATGGA CCCAGTAATA
AAAGAATTTG CTGCAAAATA CACAGACGTG GAGTTCATCA AGATTGATGT GGATGAGTTG ATGGAGGTCG CACAGGCTTT
CCAGGTGCAA ACAATGCCAA CATTTATACT GATAAAGAAA GGGAAAGTAG TGGAAAAGGT TGTGGGAGCC AAAAAGGAGG
AGTTGCAGAA GCTCATTCAG AAACGCAGGA ATTGATGAGT GCATGCTTGC ATCTATCTCG TACTGTAGTA ATAAAGTACT
TTGGGATGAC TTTGGATTAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATGTATGTAT
GTATATGTAT ATATACATAA AAAGAGAGAG ATAAAGTGTT GCTGTCTGCC ATGAGACTGA CAGTGAAGTG TGTAAATCTA
GCTGTAGCAT ATGTCGTGTA TGCATGCATG CTTATTTTAA TTATAAGTTG TATCTTGTTA TATATGTTTA AATGGTTCTT
TTATGTTAAA 

>Vigan.10G072500.01
ATGGGAGCCA ACTTTTCGAC TTTTGAGTTT GTGGAAAAAT CATCAGACTC ATCATCGTTG ATCCTCACCT TCCATTCCAC
TGCTAAATGG AACGCACACT TTCATGCCTC CAAAGAAACT AACAAGCTCT TGGTCATCGA CTTCACTGCT ACGTGGTGTG
GACCTTGCAA AACCATGGAC CCAGTAATAA AAGAATTTGC TGCAAAATAC ACAGACGTGG AGTTCATCAA GATTGATGTG
GATGAGTTGA TGGAGGTCGC ACAGGCTTTC CAGGTGCAAA CAATGCCAAC ATTTATACTG ATAAAGAAAG GGAAAGTAGT
GGAAAAGGTT GTGGGAGCCA AAAAGGAGGA GTTGCAGAAG CTCATTCAGA AACGCAGGAA TTGA

>Vigan.10G072500.01
MGANFSTFEF VEKSSDSSSL ILTFHSTAKW NAHFHASKET NKLLVIDFTA TWCGPCKTMD PVIKEFAAKY TDVEFIKIDV
DELMEVAQAF QVQTMPTFIL IKKGKVVEKV VGAKKEELQK LIQKRRN*