GBrowse Details

Vigan.10G067400.01

Basic Information:
Name: Vigan.10G067400.01
Multiple alignment
Variant Information
Position: Chr10:7432485..7438142 (+ strand)
Length: 5658
Functional Information:
Description: Similar to peptidyl-prolyl cis-trans isomerase-like isoform X2. [XP_004490023.1, Cicer arietinum]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.67,4.85,25.51,24.35,29.87,25.22,33.26,19.99
Arabidopsis thaliana homolog: AT1G26940.1
Automatic updates:
Name: NM_001255096 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP45 (GMCYP45), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr10:7432485..7432657 (+ strand)
Length: 173
Type: five_prime_UTR
Position: Chr10:7432658..7432768 (+ strand)
Length: 111
Type: CDS
Position: Chr10:7433149..7433262 (+ strand)
Length: 114
Type: CDS
Position: Chr10:7433363..7433511 (+ strand)
Length: 149
Type: CDS
Position: Chr10:7435061..7435133 (+ strand)
Length: 73
Type: CDS
Position: Chr10:7435229..7435318 (+ strand)
Length: 90
Type: CDS
Position: Chr10:7436279..7436318 (+ strand)
Length: 40
Type: CDS
Position: Chr10:7437637..7437719 (+ strand)
Length: 83
Type: CDS
Position: Chr10:7437801..7437821 (+ strand)
Length: 21
Type: CDS
Position: Chr10:7437822..7438142 (+ strand)
Length: 321
Type: three_prime_UTR

>Vigan.10G067400.01 class=Sequence position=Chr10:7432485..7438142 (+ strand)
TGGAAACAAA AGACCCAAAA CGAATCTCAT GAAAAAAAAA AAAATAACAT GAGAGGAAGG TACAAATGAT ACCAACAACT
AACAGAAAAA AGTTTCAATT TTCAGTTTTC TGTACTTGTG ATGGTTGACT CTAGTTCTCG GAGGTGAAAA GGTACTAAAT
TACGTTGGAC GAAATGTGGA TACGAGGATT CAGATTTTGG ATCAAAGGCT GTACTTTGTT GGCGTTAATA TCTGCAATTT
CCGCTCTGGA ACCCGAACTG GGATCGACTC GCGTCGTCTT TCAGGTTTCT CTATTTTAAT ATTTCATGAA GCTTGATCCT
TTTCTATTTT CATTTGTAAT TGCTTGGATT TGCAGTAAAA GCTTGAATTG AGTTTCATAC ATATGTAGTG CTTTCAGTGT
TGTAGAATTG TAGTGGAGTT CTCTATCCGT GCTCTATTAA GTAGTGGAGA AGCTCAGACT GTGGATACCC TTGTTTTTGA
TAGAGACGAT CCAAGTTATT TATGTTCTGG GTATTTGTGA AAACTGGAAT TAAGCAGCAT ATTCAGTGAA AAATCCCGGC
TTGCTTGCTG TTAGATTGTT TGTTTCTGAA TTTTATTTCA ATTTTTTTCT TTTTGTTTGT TACCTGTTGG TTGGTCACTT
AGATTCTTGT GTTTTCTGAT GCAGACAAAG TATGGGGACA TTGAATTTGG TTTCTATCCA ACCGTTGCAC CCAAAACTGT
TGACCACATT TTTAAGCTCG TGCGACTTGG AGGATATAAC ACTAACCATT TCTTTCGGGT ATTGTTCTCT GGAAAAAAAG
CTAGTGAGCG TTGGGTTTTA TGAAGGTGTT GTGTGTTTTA TTGCTTTGTG AGTCAATGGC TTTGAATTCA ATACCCAGGT
GGATAAGGGA TTTGTGGCCC AAGTAGCAGA TGTCTCGAAT GGGAGATCGG CTCCCATGAA TGAGGATCAG AAAAGAGAGT
CTGATAAGAC TGTTGTTGGT GAATTTAGTG ACGTCAAACA TGTTCGGGGT ATTCTTTCCA TGGGAAGGTT AGGTCTTTCT
AGACAGTAAT TGCTGCTTGC AATAGCATAT TTCTTCTGCT GAAGCTCTTG ATTTAATGTG ATTCTCGTCA CTTTTTTTTT
GTTATTAAAT TGCATTTGTG CATGGTTTAA CACTAATTAG TTATGAGTTT TAGTCTGTGC AAAATTTAGT TTGACTTCAA
ATTTTATTTT CTGGGCATAA TTTTAAAACT AACTAGTTAG AACTGTGGTT GCTGGTGATT ACCAAGTTTC ATAGTTTCAT
GATCCGTGTA GATTTTCAGC AAATAGTTGT TTAATTTTGA TATGGTGTTC TACCTTTGTG TTATATCCGT ATTCCCTTGG
TCTGCTCAAG CCAGGATTAA TGATGGGTCG AGTGTCATAG TACAAGTTTT GAGAAGAACT AGTACATACA TGATCTTGGT
CTTTTTAGCC AATTATCCCT TAAAACTGAG TTTTTGGGTG AAAAAATTAG ATTTACTCGT GAATTTGTTT TTAGCATTTA
TTTTCGCTTA TCTGTTCCGA ACTATCCTTG TAGGTAAAGG CTCCATTGTG AATGCCATTA TTGGCCGGAG CTCTACCACT
CCTATGAACC ATCTGATTTT GGTCAGCCCA ATTCAAAGAC CTGTTCTAGG AGTCACACAC CCACATCGTC TATTTTTAAT
ATTCTGGTCT CCCACATAAA TACCTTGGCC ACCAAGAAGC CTTTGCATCT CACAGGGGCT AGGTATGACA ATAGTTAGAT
TTTGGATAGG GTGGTAAAGT ATTTATCTCC GTAGCCACTT CTACGAAGAT ACTCATCTCT GGGCCCATAC TGACATAGAA
AACATCTTTA ATCCTCATTT TCATACGTAT TGGGTACCTA TATCCTATAC CTCGACATCT TTTCCTCGTT TTAGTTAAAA
TATATATTTT TCCTTTTGAC AAACCTTATA TCTAAATAAA ATAAAATTAT TATTTTAATA GTGTAATTAA CTATCAACGT
TAATAAAGCA AATGAATTAA ATTAAAATTA CAATAAACTC AATACAGAAA CTTCAAATAT ATTTCAAACA TAAGATCATG
AAACACAAGA CATACTTCAA GTCCCACTTA ATAAACAATA AACAACATGA ACAAGTTATT CATTAGCTTA AAAATATATC
GCTAGTACAG AGTGTTAACC CTATTTTCCA AATGAATGAC TTAAGAGGAG AGGGGACGTA AGGTTTGTAA AGGGTTGGCA
GGCTTTGGTT GTTTACTGTT TAGCATGCTG AAGGAGTAGA GTAAAATCCC ATGAACTGAA AGTGGCTAAA TGATAAAAGA
TAGCTCTGTG GAAGCATTTG GAATCTTTGC TATTTTGATG TGTATGACTG ACACAAGTTT ATTGAAGATG CTAGCAGCAG
CGTTAAGGTT ATATTTAGTA TATATTGAGT GAACTGGAAT TTATAATCTT AACACACGAT TGTTGGAGTA ATCAGCTATG
TAAAAGTTCT CATTATTATC TTCCTTGCGT ATTTCTGAAA GCATTCTTTT GGTTTGAAAT TGTTGAAGGA CCTGACATGC
AAATTTGTTC TCACAGGTAT GATGATCCAG ACAGTGGTTC ATCCTCATTT TCAATACTAC TTGGAGATGC TCCTCATCTT
GATGGAAAGG TTTGGTAACT ATGCTGCAAT ATAATATCGT TGCAAACCCA TTCACTCTAT CTTGTGATGT TTACAATTGA
TATACTGATG TAAGCCTTTT TCAGTATGCA ATATTTGGAA AAGTTACTAA AGGCGATGAG ACATTGACAA AGCTCGAGCA
ACTACCTACC CGCAAAGAGG GTATATTTGT AATGGTAAAC TAGAAATCTG ATCCATTTTG CGCATTGCTC TTTTTTTCCA
TCATTGAATG TTCAATCATG TATAATGTGC ACATGTTTCC ATGTTTTAGG AAATTTACAT TTTTTTCCCT GCAACTACTG
TTTTTTAAAA CCTTGTGGAG AAGCCATGGG CAAATCTATT GAGAAATGAG GAAGAAGAGA AAAGGGAGAG GTAGGTTGTT
GTGGGGAAGG GGGATCCTCA ACTTGAATGC ATAGATTTGT ATGTATGTAT TTGGGAAAGA AAAATTCTCT ATAGAAGTTA
TGTGGCTTCA AATTATTCAC CTTTGGGCTT TTGTTGCTAA AACTGAGGGT GGTTTTTGTA TAATAGAGCA ATTCAGAAAA
AGGGGTGTAT TAAGTTAGAA ATGTTGGTTT TTGAGATAAA ATGGGAATTA TAAATCTTGG TAATACAACC TTACATTGAC
AGTCAAGATT TAGTGATCAG TTGAACATTT AAAATATTAT GTTCATTTAT CTTTTATCTT GATAATTTAA ATATGAGCTA
AATTTTTAAT AGTTTTTGTC TATATTTATT GTGCTTATTT CTTACAGTAA CAAGAGTTCT TCTCGTTTGA TATGATGCCT
TCAAAAAATT ATATTCATAT GACAATAACT ATTTATGTTT AAGGGCGAAG ACGATAACTG TGAGCTGGTA TTTCTAATAC
TTTTTATCCT TCTTACTGAA TGTTGAAGTT TGCACTGCTT AGAATGTTTT GAAACTTAAT TGTTTCTTAC ATTTGTTGGG
GTGGTCCATT GTTGTTGTTA TCGGCATAAA ACCAATCAAT TGCTTATTTG GTATCTTCTT GGATCTGCTG GTTTTCTAAT
AGAACAAATG TGTATATGCT TATCTTTCGT TTAATGTTTT TGGAGCAAAC TTTAATTTGT TAACGTGATT ACTTCTCCCT
TTGTACTTGG ATAATTCTGT TTTTCTTTTT TCAGCCAATG GAACGCATCA CTATCTTGTC ATCTTATTAC TATGGTAAGA
ATCTTTCAAT TTTAATTTTC TTTTGTTGCT TGTTGATTCA AATTAGAGAA GTAGTTTCAC CTGATTTGGA TTTTGTCCTT
CTTTTGAATA GTAGCTTTAT AGTTTCTATA GAATTATATA TGTTCTGAAT GTATTGTGTG TCTAATGTAG ATCACACAGA
ATGTATTTAT AGCATAATAC ATAATCAATT ATAATAAATA CACCTAATAA TTAGGAATCA ATCATTCTAA TTTTTCATAT
GTAACGCTTA ATTCTCTATA AATCTGTAAT GGCCGATTAC ATTCTAATAG TTTCCCTTAT TTTGATTTTG GTCCCTCAGT
TGCCAATATG AAATTTGAAA CATTAAGGAC TAGATCTTTA TGGAAATTAG GGACACAAAT ATAATTTGGG GCTAAAACCT
AATGACAGGG ACCAAAATCC AACAAATTGA AACAAGGGAC TGATATCCTA AAGAATAAAT TATAGGGACT GAAACTACTG
GGATTAAATT TGATAAACTA CTGGGATTAA ATGTTGTGGT GGTAACTTTG CTTTTACTAC CAAATGTTAT ATCGTGAATC
ACTAATACTG GAAAAAAATG CATTGGACGA TGCCCATATT TTTTGTGATG CATCTCAGAG TTCACCCTCT AATAAAAATT
TAGAGGTAAT TGACATATAC AAAAGCTGTT CTTGCTCTAT GAGTAGAAGT AGTCTTGAAC CAAGCCCTCT TATTTTAGAC
CTGACAAGAT GTTGTAAAGA TTCTGGATTA TGAATGGCAG AAAATGCCTA GTGTCTATGT TACTAAACAT CATTGAAATC
GGTCTCAGAG TACAAGATTC CTACCATTGA AACCAACTCA AGCTCTTCCC TCCATAGTCA CCTCAGAAAC CCCCTTGATT
TCAAATTACT CTTCCATGGG ATGTGATTGA CCCATCCAAA GTTGTCATCC CCTGAATAAA AAGCTCAAGT TTAGAGGTAA
GGCTTCCTTT TGTTCCTCAA TACAAAGGTA CATTGTTTGC AAAAATAATA CAGTTTAGAT CATTTTATGT ATGTCCCTGG
AAAGCTCATC CAAAGTTAAA TTAAAATAGA CTCATGGCTG AACCCTGATG TAATCATATC CTATAAGAAT GTCCAGTTTC
GCTTGCTTGA TTTCCCATGC TAGTTAGTTA CCCTATCAAG ATTACTATTA GGCTACATTG CAGTTTTTGG ATGGAAAGGC
AATTCCAAGT TCTATCTAGT ACTTAGTCTT TTTGTCTCTT AGCTTTTCTT AATAGTTGTG TTGGATTGGA TTCTCTTTCC
CACTAAACCT TGCTGTCTGT ACCTTTTATT AGACAAAGAG ACAGAAAATT GTCAGCAAGA CAGATCAGTT TTGAAGCTCA
GACTAGCTGC CTCAGCTGTT GAAGTTGAAC GACAGGTAAA ATAATAAACG TTATCTGAAT CAAGACCATA ATATTTGTTC
CAATTGTTAA CATAGCTTTC ATACGTCGTT TTGCAGAGGA TGAAATGCTT CCCCTGATAG TTTCAAGTTT GCTATTAAAT
TGGAATGAAC ATTACACTGC TGCATTCTCA TTTTATATAA TGTCCTAGTA GTGTATCCAG ATACTGTGTT TTTTTTTATG
TACGAGATAT TGTTTAAACT ATGCACAACC ATGAAAAAAA ATTGTTCTGG GCCTTGAGAT TTGGGATATA ATGAAAATAA
TCGGGGTTAA GGGTATGTTT GATTTAGGTT TTAATATAAA TAGTTTTCAT ACATGTTCTC AACATTATGT TTTCTCATAT
TTCAACATAT ATGATACTTT TATCACTGAC ATGAATACGT TTGAATATGT TTAAAATC

>Vigan.10G067400.01
TGGAAACAAA AGACCCAAAA CGAATCTCAT GAAAAAAAAA AAAATAACAT GAGAGGAAGG TACAAATGAT ACCAACAACT
AACAGAAAAA AGTTTCAATT TTCAGTTTTC TGTACTTGTG ATGGTTGACT CTAGTTCTCG GAGGTGAAAA GGTACTAAAT
TACGTTGGAC GAAATGTGGA TACGAGGATT CAGATTTTGG ATCAAAGGCT GTACTTTGTT GGCGTTAATA TCTGCAATTT
CCGCTCTGGA ACCCGAACTG GGATCGACTC GCGTCGTCTT TCAGACAAAG TATGGGGACA TTGAATTTGG TTTCTATCCA
ACCGTTGCAC CCAAAACTGT TGACCACATT TTTAAGCTCG TGCGACTTGG AGGATATAAC ACTAACCATT TCTTTCGGGT
GGATAAGGGA TTTGTGGCCC AAGTAGCAGA TGTCTCGAAT GGGAGATCGG CTCCCATGAA TGAGGATCAG AAAAGAGAGT
CTGATAAGAC TGTTGTTGGT GAATTTAGTG ACGTCAAACA TGTTCGGGGT ATTCTTTCCA TGGGAAGGTA TGATGATCCA
GACAGTGGTT CATCCTCATT TTCAATACTA CTTGGAGATG CTCCTCATCT TGATGGAAAG TATGCAATAT TTGGAAAAGT
TACTAAAGGC GATGAGACAT TGACAAAGCT CGAGCAACTA CCTACCCGCA AAGAGGGTAT ATTTGTAATG CCAATGGAAC
GCATCACTAT CTTGTCATCT TATTACTATG ACAAAGAGAC AGAAAATTGT CAGCAAGACA GATCAGTTTT GAAGCTCAGA
CTAGCTGCCT CAGCTGTTGA AGTTGAACGA CAGAGGATGA AATGCTTCCC CTGATAGTTT CAAGTTTGCT ATTAAATTGG
AATGAACATT ACACTGCTGC ATTCTCATTT TATATAATGT CCTAGTAGTG TATCCAGATA CTGTGTTTTT TTTTATGTAC
GAGATATTGT TTAAACTATG CACAACCATG AAAAAAAATT GTTCTGGGCC TTGAGATTTG GGATATAATG AAAATAATCG
GGGTTAAGGG TATGTTTGAT TTAGGTTTTA ATATAAATAG TTTTCATACA TGTTCTCAAC ATTATGTTTT CTCATATTTC
AACATATATG ATACTTTTAT CACTGACATG AATACGTTTG AATATGTTTA AAATC

>Vigan.10G067400.01
ATGTGGATAC GAGGATTCAG ATTTTGGATC AAAGGCTGTA CTTTGTTGGC GTTAATATCT GCAATTTCCG CTCTGGAACC
CGAACTGGGA TCGACTCGCG TCGTCTTTCA GACAAAGTAT GGGGACATTG AATTTGGTTT CTATCCAACC GTTGCACCCA
AAACTGTTGA CCACATTTTT AAGCTCGTGC GACTTGGAGG ATATAACACT AACCATTTCT TTCGGGTGGA TAAGGGATTT
GTGGCCCAAG TAGCAGATGT CTCGAATGGG AGATCGGCTC CCATGAATGA GGATCAGAAA AGAGAGTCTG ATAAGACTGT
TGTTGGTGAA TTTAGTGACG TCAAACATGT TCGGGGTATT CTTTCCATGG GAAGGTATGA TGATCCAGAC AGTGGTTCAT
CCTCATTTTC AATACTACTT GGAGATGCTC CTCATCTTGA TGGAAAGTAT GCAATATTTG GAAAAGTTAC TAAAGGCGAT
GAGACATTGA CAAAGCTCGA GCAACTACCT ACCCGCAAAG AGGGTATATT TGTAATGCCA ATGGAACGCA TCACTATCTT
GTCATCTTAT TACTATGACA AAGAGACAGA AAATTGTCAG CAAGACAGAT CAGTTTTGAA GCTCAGACTA GCTGCCTCAG
CTGTTGAAGT TGAACGACAG AGGATGAAAT GCTTCCCCTG A

>Vigan.10G067400.01
MWIRGFRFWI KGCTLLALIS AISALEPELG STRVVFQTKY GDIEFGFYPT VAPKTVDHIF KLVRLGGYNT NHFFRVDKGF
VAQVADVSNG RSAPMNEDQK RESDKTVVGE FSDVKHVRGI LSMGRYDDPD SGSSSFSILL GDAPHLDGKY AIFGKVTKGD
ETLTKLEQLP TRKEGIFVMP MERITILSSY YYDKETENCQ QDRSVLKLRL AASAVEVERQ RMKCFP*